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ESSENCE-Dock: A Consensus-Based Approach to Enhance Virtual Screening Enrichment in Drug Discovery

<p>All of the individual docking data and ESSENCE-Dock consensus results for 21 diverse DUD-E targets as presented in the paper "ESSENCE-Dock: A Consensus-Based Approach to Enhance Virtual Screening Enrichment in Drug Discovery".</p> <p>The data is sorted per DUD-E target. It contains the prepared data that was used for the docking calculations (in the Undocked directory), as well as our docking results. Finally, our ESSENCE-Dock Consensus results are included as well</p> <p>Docking calculations were performed using:</p> <ul> <li><a href="https://github.com/bio-hpc/metascreener">Metascreener (V1.1)</a> (Gnina and LeadFinder Calculations; prefix VS_GN_ and VS_LF_ respectively)</li> <li><a href="https://github.com/Jnelen/DiffDockHPC/tree/DiffDockHPCv1.0">DiffDockHPC (v1.0)</a> (DiffDock calculations; prefix VS_DD_ )</li> </ul> <p>The consensus calculations were performed using ESSENCE-Dock, available via <a href="https://github.com/bio-hpc/metascreener">Metascreener </a>as well.</p> <p>The whole methodology and all of the details are described in the ESSENCE-Dock paper: <a href="https://doi.org/10.1021/acs.jcim.3c01982">https://doi.org/10.1021/acs.jcim.3c01982</a></p> <p><strong>Paper Abstract</strong></p> <p>Drug development is a complex, costly, and time-consuming endeavor. While high-throughput screening (HTS) plays a critical role in the discovery stage, it is one of many factors contributing to these challenges. In certain contexts, virtual screening can complement HTS, potentially offering a more streamlined approach in the initial stages of drug discovery. Molecular docking is an example of a popular virtual screening technique that is often used for this purpose, however, its effectiveness can vary greatly. This has led to the use of consensus docking approaches, which combine results from different docking methods to improve the identification of active compounds and reduce the occurrence of false positives. However, many of these methods do not fully leverage the latest advancements in molecular docking.<br>In response, we present ESSENCE-Dock (Effective Structural Screening ENrichment ConsEnsus Dock), a new consensus docking workflow aimed at decreasing false positives and increasing the discovery of active compounds. By utilizing a combination of novel docking algorithms, we improve the selection process for potential active compounds. ESSENCE-Dock has been made to be user-friendly, requiring only a few simple commands to perform a complete screening, while also being designed for use in high-performance computing (HPC) environments.</p>