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7 results for “coupled biogeochemistry”
Next generation global ice-ocean-biogeochemistry coupled model with 13C-cycling (GFDL MOM5-BLING13C)
<p> </p> <p>======= DESCRIPTION =======</p> <p>This is the model output supporting our paper <em>A next generation ocean carbon isotope model for climate studies I: Steady state controls on ocean <sup>13</sup>C</em> (2021 Global Biogeochemical Cycles).</p> <p>This model output simulates the transient response of ocean carbon biogeochemistry to anthropogenic CO<sub>2</sub> and <sup>13</sup>CO<sub>2</sub> atmospheric emissions with a nominal lateral resolution of 1° and 50 vertical levels. The model uses the NOAA's Geophysical Fluid Dynamics Laboratory (GFDL) MOM5 coupled to the NOAA-GFDL Biogeochemistry with Light Iron Nutrients and Gas (BLING) with <sup>13</sup>C-cycling. Atmospheric forcing is prescribed using the repeating annual cycle of the Common Ocean Reference Experiment version 2 normal year forcing dataset (COREv2-NYF). The implementation of <sup>13</sup>C-cycling applies isotopic fractionations during air-sea gas exchange, photosynthetic production of organic matter, and formation of calcium carbonate. The sensitivity of dissolved inorganic <sup>13</sup>C in the ocean to the CO<sub>2</sub> gas exchange rate is explored by repeating the simulation twice, once using the latest OMIP-CMIP6 protocol for the k-U<sub>10 </sub>parameterization (standard) and once using the previous OCMIP2 protocol (fast-gas-exchange).</p> <p> </p> <p>Files information:</p> <ul> <li><strong>ocean_static.nc</strong>: Static fields (longitude, latitude, area).</li> <li><strong>1990-2002.ocean_month.nc</strong>: Monthly output between 1990 and 2002 of ocean physical variables (temperature, salinity, averaged mixed layer depth, maximum mixed layer depth).</li> <li><strong>1990-2002.ocean_bling_trc_month_CMIP6.nc</strong>: Monthly output between 1990 and 2002 of biogeochemical variables* for the simulation using the OMIP-CMIP6 air-sea gas exchange protocol.</li> <li><strong>1970_1989_d13c_org_mldave_CMIP6.nc</strong>: Monthly output between 1970 and 1989 of d<sup>13</sup>C of organic matter averaged over the mixed layer.</li> <li><strong>1990-2002.ocean_bling_trc_month_OCMIP2.nc</strong>: Monthly output between 1990 and 2002 of biogeochemical variables* for the simulation using the OCMIP2 air-sea gas exchange protocol.</li> </ul> <p>* Biogeochemical variables are dissolved inorganic carbon, dissolved inorganic carbon-13, oxygen, and dissolved inorganic phosphate.</p> <p> </p> <p>======= HOW TO CITE =======</p> <p>This model output can be freely distributed, but please cite it using the following paper:</p> <p>Claret, M., Sonnerup, R. E., & Quay, P. D. (2021). A next generation ocean carbon isotope model for climate studies I: Steady state controls on ocean <sup>13</sup>C. <em>Global Biogeochemical Cycles</em>, 35, e2020GB006757. <a href="https://doi.org/10.1029/2020GB006757">https://doi.org/10.1029/2020GB006757</a></p> <p> </p> <p>======= ACKNOWLEDGEMENTS =======</p> <p>This work was funded by the National Science Foundation (NSF-OCE 1356756 and NSF-OCE 1829796). We would also like to acknowledge high-performance computing support from Cheyenne (<a href="https://doi.org/10.5065/D6RX99HX">doi:10.5065/D6RX99HX</a>) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the NSF.</p> <p> </p> <p>======= QUESTIONS AND REQUESTS? =======</p> <p>Please contact Mariona Claret (mclaret@uw.edu) or Rolf Sonnerup (rolf@uw.edu).</p> <p> </p>
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
<p>This is the underlying dataset of the publication "Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3" by Gürses et al. (in press), Geoscientific Model Development. In addition to unstructured mesh information, it contains the results of ocean biogeochemistry in the Regulated Ecosystem Model version 3 (REcoM3) coupled to the ocean and sea ice model FESOM2.1. The model simulations cover the period 1958 to 2021 and are forced with observed atmospheric CO<sub>2</sub> and JRA55-do atmospheric reanalyses. Three simulations are provided:</p> <p><strong>simulation A:</strong> with varying climate forcing conditions and varying atmospheric CO<sub>2</sub></p> <p><strong>simulation B:</strong> with constant climate forcing conditions and constant atmospheric CO<sub>2</sub></p> <p><strong>simulation D:</strong> with varying climate forcing conditions and constant atmospheric CO<sub>2</sub></p> <p>The following 2D/3D monthly-averaged fields (data period is given in parentheses) are provided on the native model grid:</p> <ul> <li><strong>Alk:</strong> Alkalinity (2012-2021)</li> <li><strong>CO2f:</strong> Air-Sea CO<sub>2</sub> flux (1800-2021)</li> <li><strong>DFe: </strong>Dissolved Iron concentration (2012-2021)</li> <li><strong>DIN:</strong> Dissolved Inorganic Nitrogen concentration (2012-2021)</li> <li><strong>DIC:</strong> Dissolved Inorganic Carbon concentration (1800, 1994-2021)</li> <li><strong>DSi:</strong> Dissolved Inorganic Silicon concentration (2012-2021)</li> <li><strong>DiaChl:</strong> Chlorophyll a concentration of diatoms (2012-2021)</li> <li><strong>DetC:</strong> Carbon concentration in slow-sinking detritus (2012-2021)</li> <li><strong>DetCalc: </strong>Calcite concentration in slow-sinking detritus (2012-2021)</li> <li><strong>DetSi: </strong>Silicon concentration in slow-sinking detritus (2012-2021)</li> <li><strong>idetz2c:</strong> Carbon concentration in fast-sinking detritus (2012-2021)</li> <li><strong>idetz2calc:</strong> Calcite concentration in fast-sinking detritus (2012-2021)</li> <li><strong>idetz2si:</strong> Silicon concentration in fast-sinking detritus (2012-2021)</li> <li><strong>HetC:</strong> Small zooplankton carbon biomass (2012-2021)</li> <li><strong>MLD:</strong> Mixed Layer Depth (2012-2021)</li> <li><strong>NPPn:</strong> Net Primary Production of small pyhtoplankton (2012-2021)</li> <li><strong>NPPd:</strong> Net Primary Production of diatoms (2012-2021)</li> <li><strong>O2:</strong> Dissolved Oxygen concentration (2012-2021)</li> <li><strong>PhyChl:</strong> Chlorophyll a concentration of small phytoplankton (2012-2021)</li> <li><strong>Zoo2C:</strong> Macrozooplankton carbon biomass (2012-2021)</li> <li><strong>pCO2s:</strong> Partial pressure of carbon dioxide of the surface ocean (1970-2021)</li> <li><strong>salt:</strong> Salinity (2012-2021)</li> <li><strong>temp:</strong> Temperature (2012-2021)</li> <li><strong>w:</strong> Vertical velocity (2012-2021)</li> </ul> <p>Please contact the corresponding author (ozgur.gurses@awi.de) for further information.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: input files (2 of 3)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes the files necessary for nudging the simulated temperature and salinity towards Copernicus GLORYS12V1 reanalysis values in a simulation from 1 September to 31 December 2013.</p> <p>The remaining input files for this period are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a> and <a href="https://doi.org/10.5281/zenodo.12735153" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12735153</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for phyiscs-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample output files (from the physics and biogeochemistry modules) are available at <a href="https://doi.org/10.5281/zenodo.12744506" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12744506</a> and <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: input files (1 of 3)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes most of the input files necessary for a physics-only simulation from 1 September to 31 December 2013. The remaining input files for this period, which should be placed in the directory <code>sponge/</code> within the directory tree contained in this record, are available at <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a> and <a href="https://doi.org/10.5281/zenodo.12735153" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12735153</a>. Input files for the biogeochemistry module are available upon request.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample output files (from the physics and biogeochemistry modules) are available at <a href="https://doi.org/10.5281/zenodo.12744506" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12744506</a> and <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: output files (2 of 2)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes daily-mean output of all (ocean circulation, sea ice, and biogeochemistry) modules for September 2015. Similar files for September 2013 are available at <a href="https://doi.org/10.5281/zenodo.12744506" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12744506</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample input files for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a>, <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a>, and <a href="https://doi.org/10.5281/zenodo.12735153" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12735153</a>. Input files for the biogeochemistry module are available upon request.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: input files (3 of 3)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes the files necessary for nudging the currents towards Copernicus GLORYS12V1 reanalysis values in a simulation from 1 September to 31 December 2013.</p> <p>The remaining input files for this period are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a> and <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample output files (from the physics and biogeochemistry modules) are available at <a href="https://doi.org/10.5281/zenodo.12744506" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12744506</a> and <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p>
DALROMS-NWA12 v1.0, a coupled circulation-sea ice-biogeochemistry model for the northwest North Atlantic: output files (1 of 2)
<p>DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes daily-mean output of all (ocean circulation, sea ice, and biogeochemistry) modules for September 2013, when the simulation was initialized. Similar files for January 2015 are available at <a href="https://doi.org/10.5281/zenodo.12746262" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12746262</a>.</p> <p>Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752091" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752091</a>. CPP header and runtime parameter files for the biogeochemistry module are available upon request.</p> <p>Sample input files for physics-only simulations are available at <a href="https://doi.org/10.5281/zenodo.12752190" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12752190</a>, <a href="https://doi.org/10.5281/zenodo.12734049" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12734049</a>, and <a href="https://doi.org/10.5281/zenodo.12735153" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.12735153</a>. Input files for the biogeochemistry module are available upon request.</p>
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