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1,138 results for “cryptic diversity”
Exploring the Pocillopora cryptic diversity: a new genetic lineage in the western Indian Ocean or remnants from an ancient one?
<p>Cryptic species and lineages have been widely reported during the last decades, particularly in the marine realm. Misidentifications and ignoring species complexes imply many consequences, notably biasing biodiversity and connectivity assessments, which in turn mislead our understanding of ecosystems and impact the effective design and management of conservation plans. Focusing on the Indo-Pacific coral genus <em>Pocillopora</em>, playing key roles in reef ecosystems as one of the main bio-constructors, we report the first <em>Pocillopora</em> PSH16 (ORF53; <em>sensu</em> Gélin et al. 2017, Mol Phylogenet Evol 109:430–446) colonies (<em>N</em> = 19) in the western Indian Ocean (Nosy Tanikely, Madagascar), 6,000 km further from its current distribution. Colonies were identified according to their mitochondrial Open Reading Frame (ORF) haplotype and Bayesian assignment tests based on 13-microsatellite genotypes. Additionally, we performed genetic structure and diversity analyses with sympatric colonies from other <em>Pocillopora</em> species and <em>Pocillopora</em> PSH16 colonies from the tropical southwestern Pacific, revealing (1) a weak clonal richness, (2) a weak genetic diversity and (3) a relative isolation for the newly reported PSH16 colonies. These colonies thus represent either a new, distinct and uncommon, genetic lineage, or isolated remnants of a wider one. In any case, unless specific management measures are implemented, their long-term maintenance seems compromised due to restricted gene flow within a restricted pool of genes.</p> <p> </p> <p>This dataset contains the microsatellite genotypes analysed (98 <em>Pocillopora</em> colonies × 13 loci + ORF). Missing data are encoded as "?". The sampling marine province and the population are indicated for each individual.</p>
Top: puffs of cornstarch reveal dense and varied tiny cryptic webs in the Gaoligongshan. Shown here upper left to lower right are a symphytognathid Patu jidanweishi sp. n., a mysmenid Gaoligonga changya gen. n., sp. n., and an unidentified linyphiid. Bottom: this misty mountain landscape at QiQi is typical of the Gaoligongshan in The symphytognathoid spiders of the Gaoligongshan, Yunnan, China (Araneae: Araneoidea): Systematics and diversity of micro-orbweavers
Top: puffs of cornstarch reveal dense and varied tiny cryptic webs in the Gaoligongshan. Shown here upper left to lower right are a symphytognathid Patu jidanweishi sp. n., a mysmenid Gaoligonga changya gen. n., sp. n., and an unidentified linyphiid. Bottom: this misty mountain landscape at QiQi is typical of the Gaoligongshan
Fig. 9 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 9. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 36) of E. cf. atromaculatus (Nichols & Griscom, 1917): Epulu 2 (▲), and Ituri 8 (). Also shown are the type specimens of E. atromaculatus (Nichols & Griscom, 1917) (○).
Fig. 8 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 8. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 42) of E. cf. atromaculatus (Nichols & Griscom, 1917): Ituri 5 (◊), Ituri 6 (♦), Ituri/'Kisangani region' (∆), Epulu 2 (▲), and Ituri 8 (). Also shown are the type specimens of E. atromaculatus (Nichols & Griscom, 1917) (○).
Fig. 7 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 7. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 22) of E. cf. brazzai (Pellegrin, 1901): 'Kisangani region' 2 (◊), Ituri 3 (♦) and 'Kisangani region' 3 (∆). Also shown are the type specimens examined of E. brazzai (Pellegrin, 1901) (○) and E. tshopoensis (De Vos, 1991) (●).
Fig. 5 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 5. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 36) of E. cf. miolepis specimens from the Lower Congo: Inkisi (◊), Luki 1 (♦) and Luki 2 (∆). Also shown are the type specimens examined of: E. miolepis (Boulenger, 1902) (○), E. holotaenia (Boulenger, 1904) (●), E. eutaenia (Boulenger, 1904) (□) and E. kerstenii (Peters, 1868) (■).
Fig. 3 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 3. Scatterplot of PC2 against PC1 for a PCA on 17 log-transformed measurements (n = 177) of Enteromius Cope, 1867: E. cf. miolepis (Boulenger, 1902) (◊), E. cf. brazzai (Pellegrin, 1901) (♦), E. cf. pellegrini (Poll, 1939) (∆), and E. cf. atromaculatus (Nichols & Griscom, 1917) (▲). Also shown are the type specimens examined of: E. miolepis (Boulenger, 1902) (○), E. holotaenia (Boulenger, 1904) (●), E. eutaenia (Boulenger, 1904) (□), E. kerstenii (Peters, 1868) (■), E. brazzai (Pellegrin, 1901) (), E. tshopoensis (De Vos, 1991) (▼), E. pellegrini (Poll, 1939) (+), and E. atromaculatus (Nichols & Griscom, 1917) ().
Fig. 4 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa - Corrigendum
Fig. 4. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 177) of Enteromius: E. cf. miolepis (Boulenger, 1902) (◊), E. cf. brazzai (Pellegrin, 1901) (♦), E. cf. pellegrini (Poll, 1939) (∆), and E. cf. atromaculatus (Nichols & Griscom, 1917) (▲). Also shown are the type specimens examined of: E. miolepis (Boulenger, 1902) (○), E. holotaenia (Boulenger, 1904) (●), E. eutaenia (Boulenger, 1904) (□), E. kerstenii (Peters, 1868) (■), E. brazzai (Pellegrin, 1901) (), E. tshopoensis (De Vos, 1991) (▼), E. pellegrini (Poll, 1939) (+), and E. atromaculatus (Nichols & Griscom, 1917) ().
Fig. 2. A in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Fig. 2. A. ML tree based on 558-bp-long Enteromius COI sequences with 1000 bootstrap replications, with node support shown as NJ/ML bootstrap (bootstrap values> 95% are shown; lineages <2% sequence divergence were collapsed), the label 'Kisangani region' contains samples from the Lomami/ Lobaye system and the Lobilo. B. Map of the Congo basin with the sampled river stretches indicated according to the phylogenetic lineages.
Fig. 9 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Fig. 9. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 36) of E. cf. atromaculatus (Nichols & Griscom, 1917): Epulu 2 (▲), and Ituri 8 (). Also shown are the type specimens of E. atromaculatus (Nichols & Griscom, 1917) (○).
Fig. 8 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Fig. 8. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 42) of E. cf. atromaculatus (Nichols & Griscom, 1917): Ituri 5 (◊), Ituri 6 (♦), Ituri/'Kisangani region' (∆), Epulu 2 (▲), and Ituri 8 (). Also shown are the type specimens of E. atromaculatus (Nichols & Griscom, 1917) (○).
Fig. 4 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Fig. 4. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 177) of Enteromius: E. cf. miolepis (Boulenger, 1902) (◊), E. cf. brazzai (Pellegrin, 1901) (♦), E. cf. pellegrini (Poll, 1939) (∆), and E. cf. atromaculatus (Nichols & Griscom, 1917) (▲). Also shown are the type specimens examined of: E. miolepis (Boulenger, 1902) (○), E. holotaenia (Boulenger, 1904) (●), E. eutaenia (Boulenger, 1904) (□), E. kerstenii (Peters, 1868) (■), E. brazzai (Pellegrin, 1901) (), E. tshopoensis (De Vos, 1991) (▼), E. pellegrini (Poll, 1939) (+), and E. atromaculatus (Nichols & Griscom, 1917) ().
Fig. 7 in Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa
Fig. 7. Scatterplot of PC2 against PC1 for a PCA on 10 meristics (n = 22) of E. cf. brazzai (Pellegrin, 1901): 'Kisangani region' 2 (◊), Ituri 3 (♦) and 'Kisangani region' 3 (∆). Also shown are the type specimens examined of E. brazzai (Pellegrin, 1901) (○) and E. tshopoensis (De Vos, 1991) (●).
Fig. 8 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 8. Female genitalia of Phtheochroa spp. A. P. schawerdae (Rebel, 1908) comb. nov., Bulgaria, Rila Mts. – B. P. alpinana sp. nov., France, Alpes Maritimes, paratype. Arrow: ventral diverticulum of ductus bursae. Scale bar = 250 µm.
Fig. 5 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 5. Phalli with vesica everted, Phtheochroa schawerdae (Rebel, 1908) comb. nov. A–B. Bulgaria, Rila Mts. – C–D. Republic of Macedonia, Korab Mts. A, C: left. B, D: dorsal. Abbreviations: gs = gonopore sclerotization; ld = left diverticulum; rd = right diverticulum; svd = small ventral diverticulum; vpp = ventral phallic process. Scale bar = 250 µm.
Fig. 10 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 10. Distribution of the Phtheochroa frigidana s. lat. species complex based on examined material.
Fig. 1 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 1. Adults of Phtheochroa spp. A–D. P. schawerdae (Rebel, 1908) comb. nov. A. ♂, Bulgaria, Pirin Mts. B. ♂, Bulgaria, Rila Mts. C. ♀, Bulgaria, Rila Mts. D. ♂, Republic of Macedonia, Korab Mts. – E–F. P. alpinana sp. nov., France, Alpes Maritimes. E. Holotype, ♂. F. Paratype, ♀. – G. P. apenninana sp. nov., holotype, ♂, Italy, Gran Sasso National Park. – H. P. frigidana (Guenée, 1845) stat. rev., ♂, neotype of Eupoecilia frigidana, Andorra, Pyrenees. – I–J. P. cantabriana sp. nov., Spain, Picos de Europa National Park. I. Holotype, ♂. J. Paratype, ♂. Scale bar = 5 mm, all to scale.
Fig. 9 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 9. Maximum likelihood tree (built with MEGA6) of cytochrome c oxidase subunit I (COI) barcode fragments. Values at the nodes are bootstrap support values based on 500 replicates.
Fig. 4 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 4. Ventral phallic process of Phtheochroa spp., ventral view. A–C. P. schawerdae (Rebel, 1908) comb. nov. A–B. Bulgaria, Rila Mts. C. Republic of Macedonia, Korab Mts. – D–E. P. alpinana sp. nov., France, Alpes Maritimes. D. Holotype. E. Paratype. – F–G. P. apenninana sp. nov., Italy, Gran Sasso National Park. F. Paratype. G. Holotype. – H. P. frigidana (Guenée, 1845) stat. rev., Andorra, Pyrenees, neotype of Eupoecilia frigidana. – I–J. P. cantabriana sp. nov., Spain, Picos de Europa National Park. I. Holotype. J. Paratype. Scale bar = 100 µm, all to scale.
Fig. 6 in Allopatric cryptic diversity in the alpine species complex Phtheochroa frigidana s. lat. (Lepidoptera: Tortricidae)
Fig. 6. Phalli with vesica everted of Phtheochroa spp. A–B. P. alpinana sp. nov., France, Alpes Maritimes, holotype. – C–D. P. apenninana sp. nov., Italy, Gran Sasso National Park, holotype. A, C: left. B, D: dorsal. Abbreviations: dd = dorsal diverticulum; vd = ventral diverticulum; other abbreviations as in Fig. 5. Scale bar = 250 µm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.