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10 results for “d-loop”
Figures 4–5. Mitochondrial D-loop 474 in Molecular confirmation of the occurrence of Anguilla interioris (Actinopterygii: Anguilliformes) in North Maluku of Indonesia and mitochondrial DNA haplotype diversity among existing specimens
Figures 4–5. Mitochondrial D-loop 474 bp sequence analyses. (4) Phylogenetic analysis based on maximum likelihood algorithm with the sample codes, GenBank accession numbers and sample sites shown. Bootstrap percentages are shown at the tree nodes. (5) Haplotype network with the haplotypes labelled as H1 to H9. The circle size is proportional to the number of samples, and different sample sites are represented by different colours. Small white circle represents median vector which is the hypothesized or missing haplotype. Each dash on the line symbolizes one mutational step.
Figure 2 in MtDNA D-loop genetic diversity of common quail (Coturnix coturnix) migrating through Ukraine and Spain
Figure 2. Midpoint rooted neighbor-joining phylogenetic tree of common quail based on the D-loop haplotypes (H1–H30) identified in this study. Figures indicate bootstrap support values higher than 50%. Abbreviations WU, CU, and NS represent the same sampling areas as in Figure 1.
Figure 1 in MtDNA D-loop genetic diversity of common quail (Coturnix coturnix) migrating through Ukraine and Spain
Figure 1. Median-joining network of common quail mtDNA D-loop haplotypes. The circle area is proportional to the haplotype frequency. Dashes indicate mutational steps. Colors and patterns within circles show the relative frequency of sequences from western Ukraine (WU), central Ukraine (CU), and northern Spain (NS).
Text-fig. 2. Scheme of position of primers on mtDNA D-loop (adopted from Gundry et al. 2007). in Genetic Analysis Of Possibly The Oldest Greyhound Remains Within The Territory Of The Czech Republic As Proof Of A Local Elite Presence At Chotěbuz-Podobora Hillfort In The 8 -9 Century Ad
Text-fig. 2. Scheme of position of primers on mtDNA D-loop (adopted from Gundry et al. 2007).
Fig. 2. 95 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 2. 95% minimum spanning haplotype network of D-loop haplotypes of the greater horseshoe bat, Rhinolophus ferrumequinum, in Iran. The size of the shape is proportional to the frequency of that haplotype. Gray and white circles correspond to the clade 1- sub- clade A and clade 1-subclade B in Fig. 4 respectively.
Fig. 4 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 4. Maximum likelihood (ML) tree of D-loop sequences of the greater horseshoe bat, Rhinolophus ferrumequinum from Iran, Turkey, and Europe. Numbers above branches represent bootstrap support for NJ (3000 replicates)/ML (1000) inherence, and numbers below branches indicate Bayesian posterior probabilities. Values below 50% are not shown.
Haplotype analysis of the mitochondrial DNA d-loop region reveals the maternal origin and historical dynamics among the indigenous goat populations in east and west of the Democratic Republic of Congo (DRC)
<p><span>This study aimed at assessing haplotype diversity and population dynamics of three Congolese indigenous goat populations that included Kasai goat (KG), small goat (SG), and dwarf goat (DG) of the Democratic Republic of Congo (DRC). The 1,169 bp <em>d-loop</em> region of mitochondrial DNA (mtDNA) was sequenced for 339 Congolese indigenous goats. The total length of sequences was used to generate the haplotypes and evaluate their diversities, whereas the hypervariable region (HVI, 453 bp) was analyzed to define the maternal variation and the demographic dynamic. A total of 568 segregating sites that generated 192 haplotypes were observed from the entire <em>d-loop</em> region (1,169 bp <em>d-loop</em>). Phylogenetic analyses using reference haplotypes from the six globally defined goat mtDNA haplogroups showed that all the three Congolese indigenous goat populations studied clustered into the dominant haplogroup A, as revealed by the Neighbor-joining (NJ) tree and median-joining (MJ) network. Nine haplotypes were shared between the studied goats and goat populations from Pakistan (1 haplotype), Kenya, Ethiopia and Algeria (1 haplotype), Zimbabwe (1 haplotype), Cameroon (3 haplotypes), and Mozambique (3 haplotypes). The population pairwise analysis (<em>F<sub>ST</sub></em>) indicated a weak differentiation between the Congolese indigenous goat populations. Negative and significant (<em>p</em>-value < 0.05) values for <em>F</em>u's <em>F</em>s (-20.418) and Tajima's (-2.189) tests showed the expansion in the history of the three Congolese indigenous goat populations. These results suggest a weak differentiation and a single maternal origin for the studied goats. This information will contribute to the improvement of the management strategies and long-term conservation of indigenous goats in DRC</span><span>.</span></p>
Haplotype analysis of the mitochondrial DNA d-loop region reveals the maternal origin and historical dynamics among the indigenous goat populations in east and west of the Democratic Republic of Congo (DRC)
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Fig. 3 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 3. Plot of genetic distance given as ΦST/(1- ΦST) versus geographical distance for pairwise population comparisons of Rhinolophus ferrumequinum from Iran.
Fig. 1 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 1. Map of Iran showing sampling localities of Rhinolophus ferrumequinum used in this study. Locality codes are the same as Supplementary Table S1 online. Red circles conform to the clade 1- subclade A and yellow circles conform to the clade 1- subclade B in Figs. 2, 4.
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Allen Brain Atlas
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