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169 results for “diffraction images”
Synchrotron diffraction images for the 2.9 Å crystal structure of L-Selenomethionine labeled human GDAP1
<p>Dataset collected at DLS, I04 beamline 16.5.2019. L-SeMet substituted crystals collected with SAD-method.</p> <ul> <li>Flux: 1.32e+11</li> <li>Ω Start: 0.0°</li> <li>Ω Osc: 0.10°</li> <li>Ω Overlap: 0°</li> <li>No. Images: 3600</li> <li>Resolution: 2.90Å</li> <li>Wavelength: 0.9790Å</li> <li>Exposure: 0.040s</li> <li>Transmission: 100.00%</li> <li>Beam size: 63x50μm</li> <li>Type: SAD</li> <li>Comment: X,Y,Z (-561,302,301), Aperture: Large</li> </ul> <p> </p>
Diffraction images used to solve the structures published in the article "Structure of human endo-α-1,2-mannosidase (MANEA), an antiviral host-glycosylation target"
<p>Raw diffraction images used for generating the structures published in the article "Structure of human endo-α-1,2-mannosidase (MANEA), an antiviral host-glycosylation target" (available <a href="https://doi.org/10.1073/pnas.2013620117">here</a>). Full single-crystal datasets, including images that were not used in the final analyses, are published. The software used for the processing of each dataset is listed in their respective PDB entries. Datasets 6ZJ1 and 6ZJ5 were cut anisotropically using STARANISO, other datasets were processed isotropically.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images used to solve the structures published in the article "An Epoxide Intermediate in Glycosidase Catalysis"
<p>Raw diffraction images used for generating the structures published in the article "An Epoxide Intermediate in Glycosidase Catalysis" (available <a href="https://doi.org/10.1021/acscentsci.0c00111">here</a>). Full single-crystal datasets, including images that were not used in the final analyses, are published. The software used for the processing of each dataset is listed in their respective PDB entries.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images used to solve the structures published in the article "Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-alpha-1,2-Mannanases."
<p>Raw diffraction images used for generating the structures published in the article "Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-a-1,2-Mannanases" (available <a href="https://doi.org/10.1002/chem.201800435">here</a>). Full single-crystal datasets are published. The software used for the processing of each dataset is listed in their respective PDB entries.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images used to solve the structures published in the article "Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-α-1,2-Mannanase"
<p>Raw diffraction images used for generating the structures published in the article "Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-α-1,2-Mannanase" (available <a href="https://doi.org/10.1021/jacs.6b10075">here</a>). Full single-crystal datasets are published. The software used for the processing of each dataset is listed in their respective PDB entries.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images used to solve the structures published in the article "A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites"
<p>Raw diffraction images used for generating the structures published in the article A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites" (available <a href="https://doi.org/10.1016/j.chom.2019.08.009">here</a>). The software used for the processing of each dataset is listed in their respective PDB entries.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images used to solve the structures published in the article "From 1,4-Disaccharide to 1,3-Glycosyl Carbasugar: Synthesis of a Bespoke Inhibitor of Family GH99 Endo-α-mannosidase"
<p>Raw diffraction images used for generating the structures published in the article "From 1,4-Disaccharide to 1,3-Glycosyl Carbasugar: Synthesis of a Bespoke Inhibitor of Family GH99 Endo-α-mannosidase" (available <a href="https://doi.org/10.1021/acs.orglett.8b03260">here</a>). Full single-crystal datasets, including images that were not used in the final analyses, are published. The software used for the processing of each dataset is listed in their respective PDB entries. An additional 720 degree dataset is provided, which has been collected from the same crystal as PDB 6HMH. This dataset has not been used to solve the structure presented in the paper. It works very well as an example of sulfur SAD phasing.</p> <p> </p> <p>If you find this useful, please contact me at <a href="mailto:lukasz.sobala@hirszfeld.pl">lukasz.sobala@hirszfeld.pl</a>, I am just interested in how these data are used!</p>
Diffraction images of crystals of the first and second spectrin repeats (mutant C420A/C435A) of human plectin (PDB code 2ODV): 2-wavelength SeMet MAD dataset
<p>Diffraction images of SeMet labeled crystals of a fragment of human plectin that includes the first and second spectrin repeats (SR1-SR2) of the plakin domain. The two Cys in the wild type sequence were replaced by Ala.</p> <p>This Se-Met MAD dataset was used for the <em>de novo</em> phasing of the pdb entry 2ODV (http://www.rcsb.org/pdb/explore/explore.do?structureId=2ODV).</p> <p> </p> <p>Data was collected at the BM14 beamline of the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using a Mar CCD detector. Data from the same crystal were collected at two wavelengths :</p> <ul> <li>Remote wavelength (0.9185 Å): 180 images (1 degree oscillation per image).</li> <li>Peak wavelength ( 0.9785 Å): 360 images (1 degree oscillation per image).</li> </ul>
Alpha-Galactosaminidase family GH114 protein from Fusarium solani: X-ray diffraction images
<p>This submission includes h5-files with diffraction images recorded using the Dectris EIGER X 16M detector at the DIAMOND beamline I04. The model of the crystal structure and associated information can be found in the Protein Data Bank entry 9EP6. The model has P 31 2 1 symmetry and three molecules per asymmetric unit. This is a case of crystal pathology – partial disorder. There is electron density for the fourth molecule which could be modelled with occupancy 1/2 and would overlap with a symmetry-related molecule.</p>
In situ Bragg Coherent X-ray Diffraction Imaging of Corrosion in a Co-Fe alloy microcrystal
<p>Here we present the final crystal reconstructions and analysis scripts for the paper titled "<em>In situ</em> Bragg coherent X-ray diffraction imaging of corrosion in a Co–Fe alloy microcrystal" published in CrystEngComm, 24(7), 1334-1343, on 18/01/2021. </p> <p><a href="https://doi.org/10.1107/S1600577520016264">https://doi.org/10.1107/S1600577520016264</a></p>
Refinements for Bragg coherent X-ray diffraction imaging: Electron backscatter diffraction alignment and strain field computation
<p>Here we present the final crystal reconstructions and analysis scripts for the paper titled "Refinement for Bragg coherent X-ray diffraction imaging: Electron backscatter diffraction alignment and strain field computation" published in Journal of Applied Crystallography, 55, 2022. Please see the README file for more information.</p>
SH3-like domain from Penicillium virgatum muramidase: X-ray diffraction images
<p>This submission includes a zip archive of diffraction images recorded with the ADSC QUANTUM 315 CCD detector at the DIAMOND beamline I04 on 2017-06-27. The model of the crystal structure and associated information can be found in the Protein Data Bank entry 8B2G. This is a case of crystal twinning. The data are used in CCP4 Tutorials.</p>
Raw diffraction images of pyruvate phosphate dikinase (PPDK), PDB 5JVN
<p>Raw diffration images and processing input files/logs of pyruvate phosphate dikinase (PPDK) from the C<sub>3</sub> plant <em>Flaveria pringlei</em>. The data was used for PDB entry <a href="https://www.ebi.ac.uk/pdbe/entry/pdb/5jvn">5JVN</a> (<a href="https://www.doi.org/10.1038/srep45389">Minges et al. 2017</a>). Data was collected in two helical scans from the same crystal, each consisting of 3600 images (360°/scan, 0.1°/image). Data were cut according to accumulated radiation damage at 3445 and 3400 images respectively. All data was collected from loop-harvested crystals at beamline ID29 at the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using a wavelength of 0.976252 Å and a Pilatus 6M (Dectris, Baden, Switzerland) detector.</p> <p>The crystal belonged to the spacegroup P622 with unit cell constants a, b ~ 250 Å, c ~ 84 Å, α, β, γ ~ 90°.</p> <p>.</p>
X-ray diffraction images of bovine trypsin crystals recorded at the FemtoMAX beamline of Max IV synchrotron facility
<p>The deposition concerns bovine trypsin diffraction images in two wedges. Each image is recorded on a still crystal and separated by 0.1 deg rotation. The x4.tar.gz archive contains summed intensities from individual snapshots at the same orientation, whereas x4_single.tar.gz archive contains single snapshots/orientation. </p>
X-ray diffraction images for PDB 6Z5G: The RSL - sulfonato-calix[8]arene complex, I23 form, citrate pH 4.0, solved by S-SAD
<p>Anomalous diffraction data collected at 5.975 KeV at Swiss Light Source beam line X06DA using a Pilatus 2M-F detector. </p> <p> </p>
Diffraction images of crystals of the first and second spectrin repeats (mutant C420A/C435A) of human plectin (PDB code 2ODV)
<p>Diffraction images of a native crystals of a fragment of human plectin that includes the first and second spectrin repeats (SR1-SR2) of the plakin domain. The two Cys in the wild type sequence were replaced by Ala.</p> <p>Images correspond to the dataset used to refine the pdb entry 2ODV (http://www.rcsb.org/pdb/explore/explore.do?structureId=2ODV).</p> <p> </p> <p>Data was collected at the BM14 beamline of the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using radiation of 0.9785 Å wavelength and a Mar CCD detector. The dataset consists of 360 images (1 degree oscillation per image). Data extend to ~1.85 Å resolution.</p>
Diffraction images of crystals of the Calx-beta domain of integrin beta4 (PDB code 3FQ4)
<p>Diffraction images of native crystals of the Calx-β domain<br> of the human integrin β4 subunit. Images correspond to the dataset used to solve and refine the pdb entry 3FQ4 (http://www.rcsb.org/pdb/explore/explore.do?structureId=3FQ4).</p> <p>Data was collected using a rotating anode generator (MicrostarH, Bruker AXS) and a mar345dtb image plate detector (marXperts GmbH). The dataset consists of 360 images (1 degree oscillation per image). Data extend to 1.48 Å resolution.</p>
X-ray diffraction images used for refinement of cytochrome cL from Methylobacterium extorquens.
<p>X-ray diffraction images for cytchrome cL from <em>M. extorquens</em> extending to 1.6 Angstroms resolution that were collected at ID14-2 at the ESRF (Grenoble) in April 2001. This dataset was used for high resolution refinement of the structure. </p>
X-ray diffraction images for L-threonine dehydrogenase from Trypanosoma brucei with NAD and pyruvate bound.
<p>X-ray diffraction images which were collected at ESRF (Grenoble) using an ADSC 315r CCD detector on beamline ID29 on 11th November 2009. More details are given in the uploaded notes. </p>
X-ray diffraction images for an MDM2/Nutlin-3a complex
<p>This submission includes a zip archive of diffraction images recorded with the MARMOSAIC 225 mm CCD detector at the ESRF beam line ID23-2. Relevant meta data can be found in the headers of those diffraction images or in the Protein Data Bank entry 4HG7.</p>
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.