Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
92
datasets available to search
ShareScore release 0.9.0
Dataset results
92 results for “disease incidence”
Expansion of coccidioidomycosis (Valley fever) endemic regions in the United States in response to climate change: projections of disease incidence
<p>This file contains estimations of coccidioidomycosis (Valley fever) incidence data in cases per 100,000 population per year for the contemporary time period and projections throughout the 21st century in response to RCP4.5 and RCP8.5 climate scenarios, associated with the publication:</p> <p>Gorris, M. E., Treseder, K. K., Zender, C. S., and Randerson, J. T. (2019). Expansion of coccidioidomycosis endemic regions in the United States in response to climate change. <em>GeoHealth</em>. </p> <p>The data is reported for each county in the conterminous US with its associated FIPS code (Column 1), county name (Column 2), state FIPS code (Column 3), and state name (Column 4). Column 5 contains the estimation of mean annual Valley fever incidence averaged from 2000-2015. Column 6-8 contain the estimations of mean annual Valley fever incidence for the 11-year averages surrounding years 2035, 2065, and 2095 for RCP4.5 climate scenario. Likewise, Columns 9-11 contain the estimations of mean annual Valley fever incidence for the 11-year averages surrounding years 2035, 2065, and 2095 for the RCP8.5 climate scenario. </p> <p>Details about how the incidence data was calculated may be read in the Methods subsection of the paper under "Modeling of current and future mean annual Valley fever incidence". The data provided here was used to create Figure 7 and Supporting Information Figure S5. Counties that have non-zero incidence are considered endemic by our climate-constrained niche model, so this data may also be used to create portions of Figures 3, 4, and S3. </p>
Fig. 1 in Effects of relative humidity on the vector of rose rosette disease, Phyllocoptes fructiphilus (Eriophyidae), and incidence of disease symptoms
Fig. 1. Mean (± SE) number of Phyllocoptes fructiphilus under various relative humidity regimes (A) by wk and (B) for the duration of the experiment. The same letters within a wk afer infestation or bars are not significantly different (ANOVA followed by Tukey's HSD test; α = 0.05). Where no differences were observed, no letters are included.
Fig. 2 in Effects of relative humidity on the vector of rose rosette disease, Phyllocoptes fructiphilus (Eriophyidae), and incidence of disease symptoms
Fig. 2. Mean (± SE) (A) proportion of rose rosette disease symptomatic terminals and (B) value of the Horsfall-Barratt scale on the severity of rose rosette disease. The same letters within a wk afer infestation are not significantly different (ANOVA followed by Tukey's HSD test; α = 0.05). Where no differences were observed, no letters are included.
Medication and condition codes used to develop a computable phenotype for Crohn's Disease incident cases
<p>Lists of medication and condition concepts used for Crohn's disease incident case phenotyping as described in my Master's Thesis "Machine Learning Based Prediction of Incident Cases of Crohn’s Disease Using Electronic Health Records From a Large Integrated Health System".</p> <ul> <li>ibd_medication.csv contains medication names, OMOP Concept IDs, RxNorm codes and a flag indicating whether the medication is IBD-specific (i.e., antibiotics and glucocorticoides are marked as unspecific)</li> <li>ibd_conditions.csv contains condition names, OMOP Concept IDs, SNOMED CT codes and a categorical column indicating whether the condition refers to Crohn's Disease (CD), Ulcerative Colitis (UC), or Inflammatory bowel disease unclassified (IBD-U)</li> <li>ibd_symptoms.csv contains symptom names, OMOP Concept IDs, containing symptom group categories, and a flag indicating whether the symptom was added because it is a SNOMED CT descendent code of another code on the list. The list was created based on the IBD symptoms Read Code list provided by Blackwell et. al, 2021, doi:10.1093/ecco-jcc/jjaa146</li> </ul> <p>IBD, Inflammatory Bowel Disease; OMOP, Observational Medical Outcomes Partnership; SNOMED CT, Systematized Nomenclature of Medicine Clinial Terms.</p>
Supplemental data for: A bibliometric assessment of the incidence of amyloid-Eszett (Aß), a false positive of amyloid-beta (Aβ), in the neurodegenerative disease literature
<p>One claimed reason for the development of Alzheimer’s disease (AD), a prominent neurodegenerative disease, is the extracellular aggregation of amyloid-beta (Aβ). A linguistic or formatting error has resulted in the misrepresentation of the Greek letter β with the German letter Eszett (ß), resulting in the formation of a non-existent compound, amyloid-Eszett (Aß). These datasets offer a quantified appreciation of the AD-related literature, carrying a mention of this false positive in the title, abstract and keywords of papers indexed in the Web of Science Core Collection and Scopus. Also, as a curiosity given the popularity of this large language model, we asked the questions to ChatGPT. This AI chatbot developed by OpenAI was able to recognize Eszett as a linguistic or typographic error, within this context, recognizing Aß and Aβ as equals. This erroneous substitution of a Greek letter (in Aβ) by a German one (Aß), despite giving a non-existent compound, will likely not change the underlying scientific conclusions of the affected papers, although errata might be useful to enlighten others, including metadata managers and journal copyeditors, so as not to repeat the same mistake.</p>
Edge effects, not connectivity, determine the incidence and development of a foliar fungal plant disease
Using a model plant-pathogen system in a large-scale habitat corridor experiment, we found that corridors do not facilitate the movement of wind-dispersed plant pathogens, that connectivity of patches does not enhance levels of foliar fungal plant disease, and that edge effects are the key drivers of plant disease dynamics. Increased spread of infectious disease is often cited as a potential negative effect of habitat corridors used in conservation, but the impacts of corridors on pathogen movement have never been tested empirically. Using sweet corn (Zea mays) and southern corn leaf blight (Cochliobolus heterostrophus) as a model plant-pathogen system, we tested the impacts of connectivity and habitat fragmentation on pathogen movement and disease development at the Savannah River Site, South Carolina, USA. Over time, less edgy patches had higher proportions of diseased plants, and distance of host plants to habitat edges was the greatest determinant of disease development. Variation in average daytime temperatures provided a possible mechanism for these disease patterns. Our results show that worries over the potentially harmful effects of conservation corridors on disease dynamics are misplaced, and that, in a conservation context, many diseases can be better managed by mitigating edge effects.
Effects of stem canker disease on N fixation inputs by Alnus tenuifolia to early-successional floodplains in interior and south-central Alaska. II. Nodule biomass and incidence of canker for individual genets.
This dataset contains nodule biomass and incidence of canker infection for individual genets of Alnus tenuifolia as part of a project studying disease-mediated declines in N-fixation inputs by Alnus tenuifolia to early-successional floodplains in interior and south-central Alaska
Tracing the future of epidemics: Coincident niche distribution of host animals and disease incidence revealed climate-correlated risk shifts of main zoonotic diseases in China
<p>This dataset contains host occurrence data from NACRC database and disease incidence data for the paper "Tracing the future of epidemics: Coincident niche distribution of host animals and disease incidence revealed climate-correlated risk shifts of main zoonotic diseases in China".</p>
Blood-based epigenome-wide analyses on the prevalence and incidence of nineteen common disease states
<p>Epigenome-wide association studies (EWAS) were performed using whole-blood methylation and self-report disease data (prevalent disease) for 14 conditions at the study baseline of Generation Scotland. Furthermore, EWAS were performed on 19 incident conditions using electronic health record linkage to ascertain diagnoses following the study baseline. Basic and fully-adjusted models were considered, resulting in 66 models in total.</p> <p>medRxiv 2023.01.10.23284387; doi: https://doi.org/10.1101/2023.01.10.23284387</p>
Prevention of Infection and Incidence of COVID-19 in Medical Personnel Assisting Patients With New Coronavirus Disease
ClinicalTrials.gov study NCT04405999. IPD Sharing: NO. Countries: 1. Publications: 1.
A Pilot Trial of Twice-weekly Versus Thrice-weekly Hemodialysis in Patients With Incident End-stage Kidney Disease
ClinicalTrials.gov study NCT03740048. IPD Sharing: YES. Countries: 1. Publications: 24.
Anemia Studies in Chronic Kidney Disease (CKD): Erythropoiesis Via a Novel Prolyl Hydroxylase Inhibitor (PHI) Daprodustat-in Incident Dialysis (ASCEND-ID)
ClinicalTrials.gov study NCT03029208. IPD Sharing: YES. Countries: 15. Publications: 2.
Incidence of Liver Disease-Related Outcomes in People With HIV
ClinicalTrials.gov study NCT06940375. IPD Sharing: NO. Countries: 1. Publications: 8.
Efficacy and Safety Study to Evaluate Vadadustat for the Correction or Maintenance Treatment of Anemia in Participants With Incident Dialysis-dependent Chronic Kidney Disease (DD-CKD)
ClinicalTrials.gov study NCT02865850. IPD Sharing: NO. Countries: 11. Publications: 4.
ORIENT: Olmesartan Reducing Incidence of End Stage Renal Disease in Diabetic Nephropathy Trial
ClinicalTrials.gov study NCT00141453. IPD Sharing: Not stated. Countries: 2. Publications: 3.
Measuring the disease burden of seasonal influenza in Germany 2015 – 2020 using the incidence-based disability-adjusted life years (DALYs)
<p>Version 1.0.0 was created. Dataset includes all parameters and values used for all scenario-specific calculations, using the Burden of Communicable diseases in Europe (BCoDE) tool.</p>
Data from: Fungal disease incidence along tree diversity gradients depends on latitude in European forests
European forests host a diversity of tree species that are increasingly threatened by fungal pathogens, which may have cascading consequences for forest ecosystems and their functioning. Previous experimental studies suggest that foliar and root pathogen abundance and disease severity decrease with increasing tree species diversity, but evidences from natural forests are rare. Here, we tested whether foliar fungal disease incidence was negatively affected by tree species diversity in different forest types across Europe. We measured the foliar fungal disease incidence on 16 different tree species in 209 plots in six European countries, representing a forest-type gradient from the Mediterranean to boreal forests. Forest plots of single species (monoculture plots) and those with different combinations of two to five tree species (mixed species plots) were compared. Specifically, we analyzed the influence of tree species richness, functional type (conifer vs. broadleaved) and phylogenetic diversity on overall fungal disease incidence. The effect of tree species richness on disease incidence varied with latitude and functional type. Disease incidence tended to increase with tree diversity, in particular in northern latitudes. Disease incidence decreased with tree species richness in conifers, but not in broadleaved trees. However, for specific damage symptoms, no tree species richness effects were observed. Although the patterns were weak, susceptibility of forests to disease appears to depend on the forest site and tree type.
Incidence Study on Acute Coronary Disease With ST Segment Elevation
ClinicalTrials.gov study NCT04487509. IPD Sharing: NO. Countries: 1. Publications: 2.
An Epidemiological Study of the Incidence of Inflammatory Bowel Disease in Spain
ClinicalTrials.gov study NCT02686892. IPD Sharing: UNDECIDED. Countries: 1. Publications: 28.
What is the Incidence of an Immune Disorder in Children With Invasive Pneumococcal Disease (IPD)?
ClinicalTrials.gov study NCT03815357. IPD Sharing: NO. Countries: 2. Publications: 3.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.