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Data from the article "Plastome sequencing of South American Podocarpus species reveals low rearrangement rates despite ancient Gondwanan disjunctions"
<p>Input data, intermediate and final analysis output files associated to the manuscript "Plastome sequencing of South American <em>Podocarpus </em>species reveals low rearrangement rates despite ancient Gondwanan disjunctions"</p> <p>We sequenced the plastomes of four South American species of <em>Podocarpus</em> from Patagonia, southern Yungas, and Brazilian subtropical forests: <em>P. nubigenus, P. parlatorei, P. salignus </em>and <em>P. selowii</em>. We compared their plastomes to those published from Brazil, Africa, New Zealand, and Southeast Asia, along with representatives from other genera within Podocarpaceae as outgroups. The four newly sequenced plastomes ranged in size between 133,791 bp and 133,991 bp. Gene content and order among chloroplasts from South American, African and Asian <em>Podocarpus</em> were conserved and different from the plastome of <em>P. totara</em>, from New Zealand. Most genes showed substitution patterns consistent with a conservative selective regime. Phylogenies inferred from either complete sequences or protein coding regions were mostly congruent with previous studies, but showed earlier branching of <em>P. salignus</em>, <em>P. totara</em> and <em>P. sellowii</em>.</p>
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase - Evaluation Material
<p>In this archive, we provide the (already normalized and translated) rule sets that we used for the evaluation<br> of MFA, DMFA, DMFA2, MFC, and DMFC in our paper "General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase" at AAAI 2023.We also provide the raw result files and some basic scripts that we used<br> to produce and count the results.<br> Due to licensing restrictions we are not allowed to include all of our evaluation material.<br> <br> Please refer to the provided README.md for more information.</p>
Fig. 6 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 6. Chiraziulus kaiseri (Mauriès, 1983), female vulva. Scanning electron micrographs. A. Vulva in situ behind second pair of legs, posterior view. B. Details of right vulva behind second pair of legs. C. Detail of microtubular structure under the vulva. D. Vulva in ventral view. E. Vulva in anterior view. Abbreviations: o = operculum; b = bursa. Scale bars: A = 100 μm; B–E = 10 μm.
Fig. 3 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 3. Chiraziulus kaiseri (Mauriès, 1983), paratypes. Scanning electron micrographs. A. Head and first body rings in lateral view. B. Last body rings ("tail") in lateral view. C. Tip of antenna. D. Detail of the limbus; notice lines of beadlike structures between cuticular scutes. E. Detail of labrum in frontal view. F. Gnathochilarium in ventral view; the arrow shows the distomesal setae on stipes. Scale bars: A–B, E–F = 100 μm; C = 10 μm; D = 1 μm.
Fig. 2 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 2. Distribution of species of Chiraziulus Mauriès, 1983 in Iran (Mauriès 1987). C. troglopersicus sp. nov.: red dot (1); C. kaiseri: yellow dots (2–6). 1. Neyneh Cave. 2. "Chiraz" "montagne greseuse au nord de la ville". 3. 19 km W of Shiraz. 4. 5 km N of Persepolis. 5. Oasis 95 km N of Bandarabass. 6. Sarab Cave.
Fig. 9 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 9. Chiraziulus troglopersicus sp. nov., ♂, paratype, gonopods. Scanning electron micrographs. A. Anterior gonopods in posterior view. B. Detail of the process on the tip of an anterior gonopod in posterior view. C. Anterior gonopods in anterior view. D. As C, in apical view. E. Tip of the flagellum. F. Posterior gonopods in lateral view. G. Tip of the long spine-like process of the posterior gonopod. H. Posterior gonopods in posterior view. I. As H, in anterior view. J. Detail of the mesal sternal part of the gonopods. Abbreviations: C = coxal process; T = telepodite; f = flagellum; s = setae; dp = distal process. Scale bars: A–D, F, H–I = 10 μm; E, G, J = 1 μm.
Fig. 8 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 8. Number of podous rings and midbody vertical diameter of the studied specimens. Chiraziulus kaiseri (Mauriès, 1983) in blue; Chiraziulus troglopersicus sp. nov. in red. ▲ = adult ♂♂; ● = juveniles and ♀♀.
Fig. 7 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 7. Chiraziulus kaiseri (Mauriès, 1983). Comparison of the paratype (A, C, E, G, I and K) and specimen from Ghar Sarab Cave (B, D, F, H, J and L). A–B. Left anterior gonopods, mesal view. C–D. Anterior gonopod, posterior view. E–F. Anterior gonopod, anterior view. G–H. Anterior gonopod, lateral view. I–J. Anterior gonopod, apical view. K–L. Posterior gonopods.
Fig. 12 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 12. Chiraziulus kaiseri (Mauriès, 1983), paratypes infected with ectoparasitic fungi of the genus Rickia Cavara, order Laboulbeniales. A. Arrows indicate black dots on the body rings corresponding to the insertion of the fungi. B. Scanning electron micrograph of the collum with one fungus (arrow). Scale bars: A = 1 mm; B = 100 μm.
Fig. 5 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 5. Chiraziulus kaiseri (Mauriès, 1983), ♂, paratypes, gonopods. Scanning electron micrographs. A. Anterior gonopods in anterior view. B. Anterior gonopods with one posterior gonopod in lateral view. C. As B, in apical view. D. As B, in posterior view. E–F. Anterior gonopod with detail of the processes on the tip of anterior gonopods. G–I. Posterior gonopod. J. Detail of the mesal sternal part. Abbreviations: C = coxal process; T = telepodite; Ta = anterior lobe of telopodite; Tb = posterior lobe of telepodite. Scale bars: A, D, I = 100 μm; B–C, E–H = 10 μm.
Fig. 11 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 11. Cambala annulata (Say, 1821), anterior gonopod. A. Mesal view. B. Detail of the mesal sternal part. C. Apical part of coxal processes and telepodite. Scale bars: A = 100 μm; B–C = 10 μm.
Fig. 4 in Highly disjunct and highly infected millipedes - a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites
Fig. 4. Chiraziulus kaiseri (Mauriès, 1983), ♂, paratype, anterior gonopod. Scanning electron micrographs. A. Tip of flagellum. B. Flagellum insertion and loop across anterior gonopod coxite. C. Anterior gonopod showing the entire extension of the flagellum. Scale bars: A = 10 μm; B–C = 100 μm.
Figure 1 in Disjunct distribution of Szeptyckiella gen. nov. from New Caledonia and South China undermines the monophyly of Willowsiini (Collembola: Entomobryidae)
Figure 1. Szeptyckiella boulouparica sp. nov. (A) Habitus; (B) chaetae on Ant. IV; (C) Ant. III organ; (D) scales on Abd. III; (E) lateral bothriotrichum of Abd. III; (F) scales on manubrium. Scale bar: 0.5 mm, A; 10 µm, B–F.
Figure 4 in Disjunct distribution of Szeptyckiella gen. nov. from New Caledonia and South China undermines the monophyly of Willowsiini (Collembola: Entomobryidae)
Figure 4. Szeptyckiella sinelloides sp. nov. (A) Habitus; (B) base of Ant. (I) dorsal side; (C) mucro; (D) scales on head. Scale bar: 0.5 mm, A; 10 µm, B–D.
Figure 3 in Disjunct distribution of Szeptyckiella gen. nov. from New Caledonia and South China undermines the monophyly of Willowsiini (Collembola: Entomobryidae)
Figure 3. Szeptyckiella boulouparica sp. nov., abdominal chaetotaxy: (A) Abd. I–III; (B) Abd. IV; (C) Abd. V. Scale bar: 50 µm.
Figure 2 in Forest monkeys and Pleistocene refugia: a phylogeographic window onto the disjunct distribution of the Chlorocebus lhoesti species group
Figure 2. All possible patterns of relationships among the lhoesti group species. A, topology consistent with a vicariant scenario in which the distribution of a widespread common ancestor fragments into three segments – nearly simultaneously – as the result of habitat deterioration associated with a Pleistocene glacial cycle. B, topology consistent with an alternative vicariant scenario, in which ancestral populations of Chlorocebus preussi and Chlorocebus solatus remain in contact for a short time after the divergence of Chlorocebus lhoesti, because the former two stocks range within the same Pleistocene refuge. C, tree consistent with a dispersal hypothesis in which early C. preussi populations (following divergence from C. solatus) migrate along the northern rim of the Congo Basin, and found a new lineage (C. lhoesti) in the Albertine region (see Fig. 1). D, tree consistent with a dispersal hypothesis in which early C. solatus populations (following divergence from C. preussi) conduct a similar transcontinental migration, but along the southern rim of the Congo Basin (see Fig. 1).
Genomic variation in the Black-throated Green Warbler (Setophaga virens) suggests divergence in a disjunct Atlantic Coastal Plain population (S. v. waynei)
<p>We used whole-genome resequencing to estimate genetic distinctiveness in the Black-throated Green Warbler (Setophaga virens)—including S. v. waynei—a putative subspecies that occupies a narrow disjunct breeding range along the Atlantic Coastal Plain. Despite detecting low-global differentiation (FST = 0.027) across the entire species, the principal components analysis of genome-wide differences shows the main axis of variation separates S. v. waynei from all other S. v. virens samples. We also estimated a low-migration rate for S. v. waynei, but found them to be most similar to another disjunct population from the Piedmont of North Carolina, and detected evidence of a historical north-to-south geographic dispersal among the entire species. New World wood warblers (family: Parulidae) can exhibit strong phenotypic differences among species, particularly, in song and plumage; however, within-species variation in these warblers—often designated as subspecies—is much more subtle. The existence of several isolated Black-throated Green Warbler populations across its eastern North American breeding range offers an excellent opportunity to further understand the origin, maintenance, and conservation status of subspecific populations. Our results, combined with previously documented ecological and morphological distinctiveness, support that S. v. waynei be considered a distinct and recognized subspecies worthy of targeted conservation efforts.</p>
Fig. 5 in Pereboriidae: a Permian clade of hemipteran insects with disjunctive distribution in the Northern and Southern parts of Pangea
Fig. 5. Hemipteran insect Afropereboria magnifica gen. et sp. nov. (paratype AM11141b), from Onder Karoo locality, South Africa, lowermost Abrahamskraal Formation, Wordian Stage (Permian). Forewing, photograph dry specimen.
Fig. 4 in Pereboriidae: a Permian clade of hemipteran insects with disjunctive distribution in the Northern and Southern parts of Pangea
Fig. 4. Hemipteran insect Afropereboria magnifica gen. et sp. nov. (paratype AM11141a), from Onder Karoo locality, South Africa, lowermost Abrahamskraal Formation, Wordian Stage (Permian). Forewing, photograph under alcohol.
Fig. 3 in Pereboriidae: a Permian clade of hemipteran insects with disjunctive distribution in the Northern and Southern parts of Pangea
Fig. 3. Hemipteran insect Afropereboria magnifica gen. et sp. nov. (paratype AM11447a) from Onder Karoo locality, South Africa, lowermost Abrahamskraal Formation, Wordian Stage (Permian). Hind wing, photograph under alcohol (A1), explanatory drawing (A2).
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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