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Wrist-mounted IMU data towards the investigation of free-living human eating behavior - the Free-living Food Intake Cycle (FreeFIC) dataset
<p><strong>Introduction</strong></p> <p>The Free-living Food Intake Cycle (FreeFIC) dataset was created by the <a href="http://mug.ee.auth.gr">Multimedia Understanding Group</a> towards the investigation of <em>in-the-wild</em> eating behavior. This is achieved by recording the subjects’ meals as a small part part of their everyday life, unscripted, activities. The FreeFIC dataset contains the <span class="math-tex">\(3D\)</span> acceleration and orientation velocity signals (<span class="math-tex">\(6\)</span> DoF) from <span class="math-tex">\(22\)</span> in-the-wild sessions provided by <span class="math-tex">\(12\)</span> unique subjects. All sessions were recorded using a commercial smartwatch (<span class="math-tex">\(6\)</span> using the Huawei Watch 2™ and the MobVoi TicWatch™ for the rest) while the participants performed their everyday activities. In addition, FreeFIC also contains the start and end moments of each meal session as reported by the participants.</p> <p><strong>Description</strong></p> <p>FreeFIC includes <span class="math-tex">\(22\)</span> in-the-wild sessions that belong to <span class="math-tex">\(12\)</span> unique subjects. Participants were instructed to wear the smartwatch to the hand of their preference well ahead before any meal and continue to wear it throughout the day until the battery is depleted. In addition, we followed a self-report labeling model, meaning that the ground truth is provided from the participant by documenting the start and end moments of their meals to the best of their abilities as well as the hand they wear the smartwatch on. The total duration of the <span class="math-tex">\(22\)</span> recordings sums up to <span class="math-tex">\(112.71\)</span> hours, with a mean duration of <span class="math-tex">\(5.12\)</span> hours. Additional data statistics can be obtained by executing the provided python script <em>stats_dataset.py</em>. Furthermore, the accompanying python script <em>viz_dataset.py </em>will visualize the IMU signals and ground truth intervals for each of the recordings. Information on how to execute the Python scripts can be found below.</p> <pre><code># The script(s) and the pickle file must be located in the same directory. # Tested with Python 3.6.4 # Requirements: Numpy, Pickle and Matplotlib # Calculate and echo dataset statistics $ python stats_dataset.py # Visualize signals and ground truth $ python viz_dataset.py</code></pre> <p>FreeFIC is also tightly related to Food Intake Cycle (FIC), a dataset we created in order to investigate the <em>in-meal</em> eating behavior. More information about FIC can be found <a href="https://zenodo.org/record/4421861">here</a> and <a href="https://mug.ee.auth.gr/intake-cycle-detection/">here</a>.</p> <p><strong>Publications</strong></p> <p>If you plan to use the FreeFIC dataset or any of the resources found in this page, please cite our work:</p> <pre><code>@article{kyritsis2020data, title={A Data Driven End-to-end Approach for In-the-wild Monitoring of Eating Behavior Using Smartwatches}, author={Kyritsis, Konstantinos and Diou, Christos and Delopoulos, Anastasios}, journal={IEEE Journal of Biomedical and Health Informatics}, year={2020}, publisher={IEEE}}</code></pre> <pre><code>@inproceedings{kyritsis2017automated, title={Detecting Meals In the Wild Using the Inertial Data of a Typical Smartwatch}, author={Kyritsis, Konstantinos and Diou, Christos and Delopoulos, Anastasios}, booktitle={2019 41th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)}, year={2019}, organization={IEEE}} </code></pre> <p><strong>Technical details</strong></p> <p>We provide the FreeFIC dataset as a <a href="https://docs.python.org/3/library/pickle.html">pickle</a>. The file can be loaded using Python in the following way:</p> <pre><code class="language-python">import pickle as pkl import numpy as np with open('./FreeFIC_FreeFIC-heldout.pkl','rb') as fh: dataset = pkl.load(fh)</code></pre> <p>The dataset variable in the snipet above is a dictionary with <span class="math-tex">\(5\)</span> keys. Namely:</p> <ul> <li>'subject_id'</li> <li>'session_id'</li> <li>'signals_raw'</li> <li>'signals_proc'</li> <li>'meal_gt'</li> </ul> <p>The contents under a specific key can be obtained by:</p> <pre><code class="language-python">sub = dataset['subject_id'] # for the subject id ses = dataset['session_id'] # for the session id raw = dataset['signals_raw'] # for the raw IMU signals proc = dataset['signals_proc'] # for the processed IMU signals gt = dataset['meal_gt'] # for the meal ground truth </code></pre> <p>The <em>sub</em>, <em>ses</em>, <em>raw</em>, <em>proc </em>and <em>gt </em>variables in the snipet above are lists with a length equal to <span class="math-tex">\(22\)</span>. Elements across all lists are aligned; e.g., the <span class="math-tex">\(3\)</span>rd element of the list under the 'session_id' key corresponds to the <span class="math-tex">\(3\)</span>rd element of the list under the 'signals_proc' key.</p> <p><em>sub</em>: list<br> Each element of the sub list is a scalar (integer) that corresponds to the unique identifier of the subject that can take the following values: <span class="math-tex">\([1, 2, 3, 4, 13, 14, 15, 16, 17, 18, 19, 20]\)</span>. It should be emphasized that the subjects with ids <span class="math-tex">\(15, 16, 17, 18, 19\)</span> and <span class="math-tex">\(20\)</span> belong to the held-out part of the FreeFIC dataset (more information can be found in <span class="math-tex">\( \)</span>the publication titled "A Data Driven End-to-end Approach for In-the-wild Monitoring of Eating Behavior Using Smartwatches" by Kyritsis <em>et al).</em> Moreover, the subject identifier in FreeFIC is in-line with the subject identifier in the FIC dataset (more info <a href="https://zenodo.org/record/4421861">here</a> and <a href="https://mug.ee.auth.gr/intake-cycle-detection/">here</a>); i.e., FIC’s subject with id equal to <span class="math-tex">\(2\)</span> is the same person as FreeFIC’s subject with id equal to <span class="math-tex">\(2\)</span>.</p> <p><em>ses: </em>list<br> Each element of this list is a scalar (integer) that corresponds to the unique identifier of the session that can range between <span class="math-tex">\(1\)</span> and <span class="math-tex">\(5\)</span>. It should be noted that not all subjects have the same number of sessions.</p> <p><em>raw</em>: list<br> Each element of this list is dictionary with the 'acc' and 'gyr' keys.<br> The data under the 'acc' key is a <span class="math-tex">\(N_{acc} \times 4\)</span> numpy.ndarray that contains the timestamps in seconds (first column) and the <span class="math-tex">\(3D\)</span> raw accelerometer measurements in <span class="math-tex">\(g\)</span> (second, third and forth columns - representing the <span class="math-tex">\(x, y \)</span> and <span class="math-tex">\(z\)</span> axis, respectively). The data under the 'gyr' key is a <span class="math-tex">\(N_{gyr} \times 4\)</span> numpy.ndarray that contains the timestamps in seconds (first column) and the <span class="math-tex">\(3D\)</span> raw gyroscope measurements in <span class="math-tex">\({degrees}/{second}\)</span>(second, third and forth columns - representing the <span class="math-tex">\(x, y \)</span> and <span class="math-tex">\(z\)</span> axis, respectively). All sensor streams are transformed in such a way that reflects all participants wearing the smartwatch at the same hand with the same orientation, thusly achieving data uniformity. This transformation is in par with the signals in the FIC dataset (more info <a href="https://zenodo.org/record/4421861">here</a> and <a href="https://mug.ee.auth.gr/intake-cycle-detection/">here</a>). Finally, the length of the raw accelerometer and gyroscope numpy.ndarrays is different <span class="math-tex">\((N_{acc} \neq N_{gyr})\)</span>. This behavior is predictable and is caused by the Android platform.</p> <p><em>proc: </em>list<br> Each element of this list is an <span class="math-tex">\(M\times7\)</span> numpy.ndarray that contains the timestamps, <span class="math-tex">\(3D\)</span> accelerometer and gyroscope measurements for each meal. Specifically, the first column contains the timestamps in seconds, the second, third and forth columns contain the <em><span class="math-tex">\(x,y\)</span></em> and <span class="math-tex">\(z\)</span> accelerometer values in <span class="math-tex">\(g\)</span><strong> </strong>and the fifth, sixth and seventh columns contain the <em><span class="math-tex">\(x,y\)</span></em> and <span class="math-tex">\(z\)</span> gyroscope values in <span class="math-tex">\({degrees}/{second}\)</span>. Unlike elements in the <em>raw </em>list, processed measurements (in the <em>proc</em> list) have a constant sampling rate of <span class="math-tex">\(100\)</span> Hz and the accelerometer/gyroscope measurements are aligned with each other. In addition, all sensor streams are transformed in such a way that reflects all participants wearing the smartwatch at the same hand with the same orientation, thusly achieving data uniformity. This transformation is in par with the signals in the FIC dataset (more info <a href="https://zenodo.org/record/4421861">here</a> and <a href="https://mug.ee.auth.gr/intake-cycle-detection/">here</a>). <em>No other preprocessing is performed on the data</em>; e.g., the acceleration component due to the Earth's gravitational field is present at the processed acceleration measurements. The potential researcher can consult the article "A Data Driven End-to-end Approach for In-the-wild Monitoring of Eating Behavior Using Smartwatches" by Kyritsis <em>et al. </em>on how to further preprocess the IMU signals (i.e., smooth and remove the gravitational component).</p> <p><em>meal_gt: </em>list<br> Each element of this list is a<strong> <span class="math-tex">\(K\times2\)</span></strong> matrix. Each row represents the meal intervals for the specific in-the-wild session. The first column contains the timestamps of the meal start moments<strong> </strong>whereas the second one the timestamps of the meal end moments. All timestamps are in seconds. The number of meals <span class="math-tex">\(K\)</span> varies across recordings (e.g., a recording exist where a participant consumed two meals).</p> <p><strong>Ethics and funding</strong></p> <p>Informed consent, including permission for third-party access to anonymised data, was obtained from all subjects prior to their engagement in the study. The work has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 727688 - <a href="https://bigoprogram.eu/">BigO: Big data against childhood obesity</a>.</p> <p><strong>Contact</strong></p> <p>Any inquiries regarding the FreeFIC dataset should be addressed to:</p> <p>Dr. Konstantinos KYRITSIS</p> <p>Multimedia Understanding Group (MUG)<br> Department of Electrical & Computer Engineering<br> Aristotle University of Thessaloniki<br> University Campus, Building C, 3rd floor<br> Thessaloniki, Greece, GR54124</p> <p>Tel: +30 2310 996359, 996365 <br> Fax: +30 2310 996398<br> E-mail: kokirits [at] mug [dot] ee [dot] auth [dot] gr</p>
Wrist-mounted IMU data towards the investigation of in-meal human eating behavior - the Food Intake Cycle (FIC) dataset
<p><strong>Introduction</strong></p> <p>The Food Intake Cycle (FIC) dataset was created by the <a href="http://mug.ee.auth.gr">Multimedia Understanding Group</a> towards the investigation of <em>in-meal</em> eating behavior. The FIC dataset contains the triaxial acceleration and orientation velocity signals (<span class="math-tex">\(6\)</span> DoF) from <span class="math-tex">\(21\)</span> meal sessions provided by <span class="math-tex">\(12\)</span> unique subjects. All meals were recorded in the restaurant of Aristotle University of Thessaloniki using a commercial smartwatch, the Microsoft Band <span class="math-tex">\(2\)</span>™ for ten out of the twenty-one meals and the Sony Smartwatch <span class="math-tex">\(2\)</span>™ for the remaining meals. In addition, the start and end moments of each food intake cycle as well as of each micromovement are annotated throughout the FIC dataset.</p> <p><strong>Description</strong></p> <p>A total of <span class="math-tex">\(12\)</span> subjects were recorded while eating their launch at the university’s cafeteria. The total duration of the <span class="math-tex">\(21\)</span> meals sums up to <span class="math-tex">\(246\)</span> minutes, with a mean duration of <span class="math-tex">\(11.7\)</span> minutes. Each participant was free to select the food of their preference, typically consisting of a starter soup, a salad, a main course and a desert. Prior to the recording, the participant was asked to wear the smartwatch to the hand that he typically uses in his everyday life to manipulate the fork and/or the spoon. A GoPro™ Hero <span class="math-tex">\(5\)</span> camera was already set at the table of the participant using a small, <span class="math-tex">\(23\)</span> cm in height, tripod facing the participant, including both the food tray and upper body part in it’s field of view. The purpose of video recording was to obtain ground truth data by manually annotating the IMU sequences based on the video stream. Participants were also asked to perform a clapping hand movement both at the start and end of the meal, for synchronization purposes (as this movement is distinctive in the accelerometer signal). No other instructions were given to the participants. It should be noted that the FIC dataset does not contain instances related with liquid consumption or eating without the fork, knife and spoon (e.g. eating directly with hands). The accompanying python script <em>viz_dataset.py </em>will visualize the IMU signals and food intake cycle (i.e., bite) ground truth intervals for each of the recordings. Information on how to execute the Python scripts can be found below.</p> <pre><code class="language-python"># The script(s) and the pickle file must be located in the same directory. # Tested with Python 3.6.4 # Requirements: Numpy, Pickle and Matplotlib # Visualize signals and ground truth $ python viz_dataset.py</code></pre> <p>FIC is also tightly related to FreeFIC, a dataset we created in order to investigate the <em>in-the-wild </em>eating behavior. More information on FreeFIC can be found <a href="https://zenodo.org/record/4421951">here</a> and <a href="https://mug.ee.auth.gr/free-food-intake-cycle-detection/">here</a>.</p> <p><strong>Annotation</strong></p> <p><em>Micromovements</em></p> <p>For all recordings, the start and end points of all <span class="math-tex">\(6\)</span> micromovements of interest were manually labeled. The micromovements of interest include:</p> <ul> <li><strong>p</strong>ick food, wrist manipulates a fork to pick food from the plate</li> <li><strong>u</strong>pwards, wrist moves upwards, towards the mouth area</li> <li><strong>d</strong>ownwards, wrist moves downwards, away from the mouth area</li> <li><strong>m</strong>outh, wrist inserts food in mouth</li> <li><strong>n</strong>o movement, wrist exhibits no movement</li> <li><strong>o</strong>ther movement, every other wrist movement</li> </ul> <p>The annotation process was performed in such a way that the start and end times of each micro-movement span the whole meal session, without overlapping each other.</p> <p><em>Food intake cycles</em></p> <p>For all recordings, we annotated the start and end points for each intake cycle (i.e. every bite). Each food intake cycle starts with a <strong>p</strong>, ends with a <strong>d </strong>and contains an <strong>m </strong>micromovement.</p> <p><strong>Publications</strong></p> <p>If you plan to use the FIC dataset or any of the resources found in this page, please cite our work:</p> <pre><code>@article{kyritsis2019modeling, title={Modeling Wrist Micromovements to Measure In-Meal Eating Behavior from Inertial Sensor Data}, author={Kyritsis, Konstantinos and Diou, Christos and Delopoulos, Anastasios}, journal={IEEE journal of biomedical and health informatics}, year={2019}, publisher={IEEE}}</code></pre> <pre><code>@inproceedings{kyritsis2017food, title={Food intake detection from inertial sensors using lstm networks}, author={Kyritsis, Konstantinos and Diou, Christos and Delopoulos, Anastasios}, booktitle={International Conference on Image Analysis and Processing}, pages={411--418}, year={2017}, organization={Springer}}</code></pre> <pre><code>@inproceedings{kyritsis2017automated, title={Automated analysis of in meal eating behavior using a commercial wristband IMU sensor}, author={Kyritsis, Konstantinos and Tatli, Christina Lefkothea and Diou, Christos and Delopoulos, Anastasios}, booktitle={2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)}, pages={2843--2846}, year={2017}, organization={IEEE}}</code></pre> <p><strong>Technical details</strong></p> <p>We provide the FIC dataset as a <a href="https://docs.python.org/3/library/pickle.html">pickle</a>. The file can be loaded using Python in the following way:</p> <pre><code class="language-python">import pickle as pkl import numpy as np with open('./FIC.pkl','rb') as fh: dataset = pkl.load(fh)</code></pre> <p>The <em>dataset </em>variable in the snipet above is a dictionary with <span class="math-tex">\(6\)</span> keys. Namely:</p> <ul> <li>'subject_id'</li> <li>'session_id'</li> <li>'signals_raw'</li> <li>'signals_proc'</li> <li>'meal_gt'</li> <li>'bite_gt'</li> </ul> <p>The contents under a specific key can be obtained by:</p> <pre><code>sub = dataset['subject_id'] # for the subject id ses = dataset['session_id'] # for the session id raw = dataset['signals_raw'] # for the raw IMU signals proc = dataset['signals_proc'] # for the processed IMU signals mm = dataset['mm_gt'] # for the micromovement ground truth bite = dataset['bite_gt'] # for the bite ground truth</code></pre> <p>The <em>sub</em>, <em>ses</em>, <em>raw</em>, <em>proc, mm </em>and<em> gt </em>variables in the snipet above are lists with a length equal to <span class="math-tex">\(21\)</span>. Elements across all lists are aligned; e.g., the <span class="math-tex">3</span>rd element of the list under the 'session_id' key corresponds to the <span class="math-tex">3</span>rd element of the list under the 'signals_proc' key.</p> <p><em>sub</em>: list<br> Each element of the sub list is a scalar (integer) that corresponds to the unique identifier of the subject that can take values between <span class="math-tex">\(1\)</span> and <span class="math-tex">\(12\)</span>. Moreover, the subject identifier in FIC is in-line with the subject identifier in the FreeFIC dataset (information available <a href="https://zenodo.org/record/4421951">here</a> and <a href="https://mug.ee.auth.gr/free-food-intake-cycle-detection/">here</a>); i.e., FIC’s subject with id equal to <span class="math-tex">2</span> is the same person as FreeFIC’s subject with id equal to <span class="math-tex">2</span>.</p> <p><em>ses: </em>list<br> Each element of this list is a scalar (integer) that corresponds to the unique identifier of the session that can range between <span class="math-tex">1</span> and <span class="math-tex">\(3\)</span>. It should be noted that not all subjects have the same number of sessions.</p> <p><em>raw</em>: list<br> Each element of this list is dictionary with the 'acc', 'gyr' and 'offset' keys.<br> The data under the 'acc' key is a <span class="math-tex"><span class="math-tex">\(N_{acc}\times4\)</span></span> numpy.ndarray that contains the timestamps in seconds (first column) and the <span class="math-tex"><em><span class="math-tex">\(3D\)</span></em></span> raw accelerometer measurements in <span class="math-tex">\(g\)</span> (second, third and forth columns - representing the <span class="math-tex">\(x, y\)</span> and <span class="math-tex"><em><span class="math-tex">\(z\)</span></em></span> axis, respectively). The data under the 'gyr' key is a <span class="math-tex"><span class="math-tex">\(N_{gyr} \times 4\)</span></span> numpy.ndarray that contains the timestamps in seconds (first column) and the <span class="math-tex">\(3D\)</span> raw gyroscope measurements in <span class="math-tex">\(degrees/second\)</span>(second, third and forth columns - representing the<span class="math-tex"><em> <span class="math-tex">\(x, y\)</span></em></span> and <span class="math-tex">\(z\)</span> axis, respectively). All sensor streams are transformed in such a way that reflects all participants wearing the smartwatch at the same hand with the same orientation, thusly achieving data uniformity. This transformation is in par with the signals in the FreeFIC dataset (information available <a href="https://zenodo.org/record/4420039">here</a> and <a href="https://mug.ee.auth.gr/free-food-intake-cycle-detection/">here</a>). Finally, the length of the raw accelerometer and gyroscope numpy.ndarrays is different <span class="math-tex"><span class="math-tex">\(N_{acc} \neq N_{gyr}\)</span></span>. This behavior is predictable and is caused by the Android/MS Band platforms. The offset key contains a float that is used to align the IMU sensor streams with the videos that were used for annotation purposes (videos are not provided).</p> <p><em>proc: </em>list<br> Each element of this list is an <span class="math-tex">\(M \times 7\)</span> numpy.ndarray that contains the timestamps, <span class="math-tex"><em><span class="math-tex">\(3D\)</span></em></span> accelerometer and gyroscope measurements for each meal. Specifically, the first column contains the timestamps in seconds, the second, third and forth columns contain the <span class="math-tex">\(x,y\)</span> and <span class="math-tex"><em><span class="math-tex">\(z\)</span></em></span> accelerometer values in <span class="math-tex"><em><span class="math-tex">\(g\)</span></em></span><strong> </strong>and the fifth, sixth and seventh columns contain the <span class="math-tex">\(x, y\)</span> and <span class="math-tex"><em><span class="math-tex">\(z\)</span></em></span> gyroscope values in <span class="math-tex"><em><span class="math-tex">\(degrees/second\)</span></em></span>. Unlike elements in the <em>raw </em>list, processed measurements (in the <em>proc</em> list) have a constant sampling rate of <span class="math-tex">100</span> Hz and the accelerometer/gyroscope measurements are aligned with each other. In addition, all sensor streams are transformed in such a way that reflects all participants wearing the smartwatch at the same hand with the same orientation, thusly achieving data uniformity. This transformation is in par with the signals in the FreeFIC dataset (information available <a href="https://zenodo.org/record/4420039">here</a> and <a href="https://mug.ee.auth.gr/free-food-intake-cycle-detection/">here</a>). <em>No other preprocessing is performed on the data</em>; e.g., the acceleration component due to the Earth's gravitational field is present at the processed acceleration measurements. The potential researcher can consult the article "Modeling Wrist Micromovements to Measure In-Meal Eating Behavior from Inertial Sensor Data" by Kyritsis <em>et al. </em>on how to further preprocess the IMU signals (i.e., smooth and remove the gravitational component).</p> <p><em>mm</em>: list<br> Each element of this list is a <span class="math-tex">\(K \times 3\)</span> numpy.ndarray. Each row represents a single micromovement interval. The first column contains the timestamps of the start moments in seconds, the second column the timestamps of the end moments in seconds and the third column a number representing the type of the micromovement. The identifier to micromovement mapping is provided below:<br> <span class="math-tex">\([1] \rightarrow\)</span> <strong>n</strong>o movement<br> <span class="math-tex">\([2] \rightarrow\)</span> <strong>u</strong>pwards<br> <span class="math-tex">\([3] \rightarrow\)</span> <strong>d</strong>ownwards<br> <span class="math-tex">\([4] \rightarrow\)</span> <strong>p</strong>ick food<br> <span class="math-tex">\([5] \rightarrow\)</span> <strong>m</strong>outh<br> <span class="math-tex">\([6] \rightarrow\)</span> <strong>o</strong>ther movement</p> <p><em>bite</em>: list<br> Each element of this list is a <strong><span class="math-tex">\(L\times2\)</span></strong> numpy.ndarray. Each row represents a single food intake event (i.e., a bite). The first column contains the start moments while the second column contains the end moments of each intake event. Both the start and end moments are provided in seconds.</p> <p><strong>Ethics and funding</strong></p> <p>Informed consent, including permission for third-party access to anonymised data, was obtained from all subjects prior to their engagement in the study. The work has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 727688 - <a href="https://bigoprogram.eu/">BigO: Big data against childhood obesity</a>.</p> <p><strong>Contact</strong></p> <p>Any inquiries regarding the FIC dataset should be addressed to:</p> <p>Dr. Konstantinos KYRITSIS</p> <p>Multimedia Understanding Group (MUG)<br> Department of Electrical & Computer Engineering<br> Aristotle University of Thessaloniki<br> University Campus, Building C, 3rd floor<br> Thessaloniki, Greece, GR54124</p> <p>Tel: +30 2310 996359, 996365 <br> Fax: +30 2310 996398<br> E-mail: kokirits [at] mug [dot] ee [dot] auth [dot] gr</p>
Reanalysis accounting for clustering and nesting overturns conclusions in: "Watching TV Cooking Programs: Effects on Actual Food Intake Among Children"
<p>Stata code to reproduce results from Folkvord F, Anschütz D, Geurts M. Watching TV cooking programs: effects on actual food intake among children. <em>J Nutr Educ Behav</em>. 2020;52(1):3-9.</p>
Validity and reproducibility of a food frequency questionnaire to determine dietary intakes among Lebanese athletes
<p><a name="_Hlk166496350"></a><span><strong>Background</strong> </span><strong><span>and objective:</span></strong><span><strong><span> </span></strong></span><span><span>Nutrition is a basic need for athletes; thus, adequate dietary intake is crucial for maintaining overall health, facilitating training adaptations and boosting athletic performance. Accurate dietary assessment tools are required to minimize the challenges faced by athletes. This study verifies the validity and reproducibility of a 157 item semi-quantitative food frequency questionnaire (FFQ) among Lebanese athletes. This is the only Arabic questionnaire in Lebanon that estimates food consumption for athletes which can also be used in Arabic speaking countries. There has been no previous validated food frequency questionnaire that estimated food consumption for athletes in Lebanon. </span></span><span><strong><span>Methods:</span></strong></span><span><strong><span> </span></strong></span><span><span>A total of 194 athletes were included in the study to assess the validity of the food frequency questionnaire against four days dietary recalls by comparing the total nutrient intake values from the food frequency questionnaire with the mean values of four 24-hour dietary recalls using Spearman correlation coefficient and Bland Altman plots. In order to measure the reproducibility, the intra class correlation coefficients were calculated by repeating the same food frequency questionnaire after one month. </span></span><span><strong><span>Results:</span></strong></span><span><strong><span> </span></strong></span><span><span>The intra-class correlation coefficient between the two-food frequency questionnaires ranged from average (0.739 for carbohydrates) to good (0.870 for energy (Kcal)), to excellent (0.919 for proteins) concerning macronutrients and ranged from average (0.688 for vitamin D), to excellent (0.952 for vitamin B12), indicating </span></span><span><span>an acceptable reproducibility. </span></span><span><span>Spearman’s correlation coefficients of dietary intake estimate from the food frequency questionnaire and the four dietary recalls varied between 0.304 for sodium, 0.469 for magnesium to 0.953 for caloric intake (kcal). Bland-Altman plots illustrated a percentage of agreement ranging between 94.3% for fats to 96.4% for proteins. </span></span><span><strong><span>Conclusion:</span></strong></span><span><strong><span> </span></strong></span><span><span>This food frequency questionnaire has a reliable validity and reproducibility to evaluate dietary assessments and is an appropriate tool for future interventions to ensure the adoption of adequate eating strategies by athletes.</span></span></p>
Data and code for 'Food insecurity and patterns of dietary intake in a sample of UK adults'
<p>Data and code for ' <strong>Food insecurity and patterns of dietary intake in a sample of UK adults</strong>' by Shinwell et al.</p> <p>For the UK data, the script 'analysis UK dataset.r' is required along with the csv data file.</p> <p>For the NHANES data analyses, the user needs to:</p> <p>a) Download the required 2013-4 NHANES data files as described at https://zenodo.org/record/3361283</p> <p>b) Run the script 'merging.script.r' from https://zenodo.org/record/3361283</p> <p>c) Using the resulting .csv file in conjunction with the script 'analysis NHANES dataset.r' to reproduce the analyses in the paper.</p> <p>The reason for doing it this indirect way is that the raw NHANES data are not ours to share.</p>
Food Survey for the detection of high salt intakes
<p><em><strong>Food consumption frequency survey for detection of high salt intakes. (Foods correlated with salt intake).</strong></em></p> <p> </p>
Verzehrsstudie zur Ermittlung der Lebensmittelaufnahme von Säuglingen und Kleinkindern für die Abschätzung eines akuten Toxizitätsrisikos durch Rückstände von Pflanzenschutzmitteln (VELS) [Consumption study to determine the food intake of infants and young children for the estimation of an acute toxicity risk through residues of plant protection products]
<p>The VELS study (<strong>V</strong>erzehrsstudie zur <strong>E</strong>rmittlung der Lebensmittelaufnahme von <strong>S</strong>äuglingen und Kleinkindern für die Abschätzung eines akuten Toxizitätsrisikos durch Rückstände von Pflanzenschutzmitteln; VELS) was conducted in 2001/2002. Data were collected from 804 infants, toddlers and children (age group 0.5 to <5 years) in Germany. The food consumed was recorded by the parents as "food as eaten" over a total of 6 days (2x3-day food record with an interval of 3-6 months for toddlers and 4-8 weeks for infants). Anthropometric data are also included.</p> <p>Foods are coded according to the German food coding system (BLS; Bundeslebensmittelschlüssel) and food names and additional information is available in German only.</p> <p>Dataset owner: German Federal Institute for Risk Assessment (BfR)</p> <p>Data collection was carried out by the University of Paderborn on behalf of the Federal Ministry of Food and Agriculture [Bundesministerium für Ernährung und Landwirtschaft; BMEL] – formerly Federal Ministry for Food, Agriculture and Consumer Protection [Bundesministerium für Verbraucherschutz, Ernährung und Landwirtschaft; BMVEL]</p>
Validity of the PortionSize App to Measure Children's Food Intake
ClinicalTrials.gov study NCT05587816. IPD Sharing: NO. Countries: 1. Publications: 0.
Food composition database for nutrient intake: selected vitamins and minerals in selected European countries
<p>Following a request from the European Commission for a review of European dietary reference values (DRVs), the EFSA’s Panel on Dietetic Products, Nutrition and Allergies (NDA) has prepared a number of Scientific Opinions on DRVs for micronutrients. The DATA Unit supported this activity by estimating the nutrient intake of a number of micronutrients in nine selected European countries and different age groups. In addition, the DATA Unit also provided information on average content of food sources of the respective nutrients per country based on the composition database, as well as main food group contributors to nutrient intakes and assessed the comparability of the provided data with pertinent published intake data.</p> <p>Intake estimates have been assessed using food consumption data from the EFSA Comprehensive Food Consumption Database (EFSA, 2011a) and the EFSA Nutrient composition database. Food composition data used to populate the Nutrient composition database were provided to EFSA through the EFSA procurement project ‘<em>Updated food composition database for nutrient intake’</em> (Roe at al., 2013). Data were provided following the EFSA specification for standard sample description for food and feed and were classified according to the FoodEx2 classification system of EFSA (EFSA, 2011b).</p> <p>The food composition data used in these assessments and here published cover the following vitamins and minerals: calcium (Ca); copper (Cu); cobalamin (vitamin B12); magnesium (Mg); niacin; phosphorus (P); potassium (K); riboflavin; thiamin; iron (Fe); selenium (Se); vitamin B6; vitamin K, zinc (Zn), and vitamin E<sup>1</sup>. The food composition dataset contains data from seven<sup>2</sup> countries: Finland, France, Germany, Italy, Netherlands, Sweden, and United Kingdom. This dataset version has been checked for outliers but is prior to data completion for missing foods and nutrient values.</p> <p><sup>1</sup> Vitamin E is defined as alpha-tocopherol (AT) only, however as most food composition databases in the EU contain values as alpha-tocopherol equivalents (TE), data on TE are also provided</p> <p><sup>2</sup> For the nutrient intake estimates of Ireland and Latvia present in the opinions of the EFSA Panel on Dietetic Products, Nutrition and Allergies (NDA), food composition data from UK and Germany were respectively used</p>
Price discounts on low energy dense foods on food intake and health status
<p>The objective of this study was to observe the effects of a multi-level (30%, 15%, and 0%) randomized discount on fruits, vegetables, and non-caloric beverages on changes in dietary intake. This randomized controlled trial (RCT) comprised an 8-week baseline, a 32-week intervention, and a 16-week follow-up. 24-hour dietary recalls were conducted during the baseline period and before the intervention midpoint. In-person clinical measures were analyzed from Week 8 (end of baseline) and 24 (midpoint). This report is from an interim analysis up to the intervention period midpoint at Week 24, as the study is still ongoing. Participants with BMIs of 24.5-50 kg/m<sup>2</sup> and ages 18-70 years old who were the primary household shoppers were recruited from several New York City supermarkets, starting in September 2018. Of these, we analyzed 20 in the 30% discount group, 25 in the 15% discount group, and 19 in the 0% discount group. The 30% discount group reported greater intake of vegetables (+98.4 g ± 48.9 SD, <em>P </em>= 0.049) and diet soda (+63.3 g ± 29.3, <em>P</em> = 0.035) relative to the baseline period, compared to the 0% discount group. The clinical measures including body weight remained unchanged. The participants who experienced the COVID-19 pandemic had a marginal increase in body weight of 1.5 kg, P = 0.053. In conclusion, we observed a significant increase in intake of vegetables and diet soda in the 30% discount group relative to the 0% discount group.</p>
A selective role for receptor activity-modifying protein in sub-chronic action of the amylin selective receptor agonist NN1213 compared to salmon calcitonin on body weight and food intake in male mice
<p>Raw data prism files for the manuscript "A selective role for receptor activity-modifying protein in sub-chronic action of the amylin selective receptor agonist NN1213 compared to salmon calcitonin on body weight and food intake in male mice"</p>
Periprandial changes in brain serotonergic system and food intake related neuropeptides
<p><span>In this work, we assessed periprandial serotonin and 5-hydroxyindolacetic acid abundance in several brain areas of rainbow trout, in parallel with the evaluation of gene expression of tryptophan hydroxilase 1 and 2, neuropeptides involved in the central control of food intake, and the quantification of plasma glucose and cortisol. The results showed severe changes in serotonergic systems around mealtime, the most prominent being the increase in their activity just after food intake, suggesting that serotonin has a relevant role in relation to the daily timing of food intake, probably triggering satiety signals. In addition, a temporal adjustment of neuropeptide expression and plasma cortisol was found in relation to food intake, supporting its role in the regulation of feeding behaviour.</span></p>
Effects of Divalproex Sodium on Food Intake, Energy Expenditure, and Posture Allocation
ClinicalTrials.gov study NCT00287053. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Food Intake Response to Short-Term Modifications of Metabolism in Humans
ClinicalTrials.gov study NCT02939404. IPD Sharing: UNDECIDED. Countries: 1. Publications: 3.
The Acute Effect of Protein or Carbohydrate Intake on Testosterone Levels and Food Intake in Children and Adolescent Boys
ClinicalTrials.gov study NCT03412136. IPD Sharing: NO. Countries: 1. Publications: 8.
Evaluation of Tolerance, Suckling and Food Intake After Repeated Nasals Administrations of Oxytocin in PWS Infants
ClinicalTrials.gov study NCT02205034. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Acute Effect of MMT Peel Powder on Glycemic Response, Satiety, and Food Intake in Adults at Risk for Type 2 Diabetes
ClinicalTrials.gov study NCT05298111. IPD Sharing: NO. Countries: 1. Publications: 3.
School Water Access, Food and Beverage Intake, and Obesity
ClinicalTrials.gov study NCT03181971. IPD Sharing: NO. Countries: 1. Publications: 3.
Genetic Architecture of Avoidant/Restrictive Food Intake Disorder
ClinicalTrials.gov study NCT05605067. IPD Sharing: YES. Countries: 1. Publications: 2.
Protein Quality on Appetite Control, Reward-driven Eating, & Subsequent Food Intake
ClinicalTrials.gov study NCT02285907. IPD Sharing: NO. Countries: 1. Publications: 1.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.