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4 results for “fusiform rust”
Targeted Re-sequencing Identifies Candidate Fusiform Rust Resistance Genes in Loblolly Pine
<p>A fasta file containing the subset of the v2.01 Pita genome in addition to the novel NLR genes that were targeted by hybridization probes. </p> <p>A bed file describing the intervals targeted by the hybridization probes.</p> <p>Trinity assemblies of the 30 RNAseq libraries along with predictions by transdecoder of CDS and peptide sequences from those trinity assemblies. </p>
R/QTL datasets for fusiform rust resistance QTL mapping
<p>Fusiform rust disease, caused by the endemic fungus <i>Cronartium quercuum</i> f. sp. <i>fusiforme</i>, is the most damaging disease affecting economically important pine species in the southeast United States. In this report, we detail the genomic localization and sequence-level discovery of candidate race-nonspecific broad-spectrum fusiform rust resistance genes in <i>Pinus taeda </i>L. Two full-sib families, each with ~1000 progeny, were challenged with a complex inoculum consisting of over 150 pathogen isolates. High-density linkage mapping revealed three QTL distributed on two linkage groups. The two QTL on linkage group 2 were additive with respect to their effects on the probability of disease outcome. All three QTL were validated using a population of 2057 cloned pine genotypes in a six-year-old multi-environmental field trial. As a complement to the QTL mapping approach, bulked segregant RNAseq analysis revealed a small number of candidate nucleotide binding leucine rich repeat genes harboring SNP significantly associated with disease resistance. The results of this study demonstrate that single qualitative resistance genes can confer effective resistance against genetically diverse mixtures of an endemic pathogen.</p>
R/QTL datasets for fusiform rust resistance QTL mapping
Open the record for dataset details and reuse information.
Transcriptional profiling of the rust fungus Cronartium quercuum f. sp. fusiforme (Cqf) during vegetative growth on 2 different hosts.
GEO Series GSE51655. Cronartium quercuum. 16 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.