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187 results for “genetic correlations”

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zenodo44/100

Data from: Evolutionary potential and constraints in an aposematic species: Genetic correlations between warning coloration and fitness components in wood tiger moths

<p>Phenotypic data and pedigrees of two laboratory populations of wood tiger moths (<em>Arctia plantaginis</em>) of Finnish (=FIN) and Estonian (=EST) ancestry.</p> <p><strong>Pedigree:&nbsp;</strong><br>ID: individual identifier<br>sire = Father<br>dam=mother</p> <p><strong>Pheno.data:&nbsp;</strong><br>ID: individual identifier<br>Sex: 1=male; 2=female<br>hatchingdate: date when larva hatched<br>pupadate: date of pupation<br>adultdate: date of exclusion<br>Pupa.Weight: weight of pupa [mg]<br>Female.Colour = hindwing colour of females. In this species hindwing colour in females varies continuously from yellow to red. It was quantified by visual matching of hinwdings against a colour scale ranging from &nbsp;1 = yellow to 6 = red.&nbsp;<br>Signal.Size = larva signal size. Larvae show an orange patch of variable size on the back of their black body. The size is given as number of segments<br>Egg.N = egg number produced by the individual<br>Off.N = offspring number. Larvae were counted 2-3 weeks after egg laying</p> <p>&nbsp;</p>

opencc-by-4.0Oct 2024View details →
dryad40/100

Data from: Genetic and environmental canalization are not correlated among altitudinally varying populations of Drosophila melanogaster

<p>Organisms are exposed to environmental and mutational effects influencing both mean and variance of phenotypes.  Potentially deleterious effects arising from this variation can be reduced by the evolution of buffering (canalizing) mechanisms, ultimately reducing phenotypic variability. There has been interest regarding the conditions enabling the evolution of canalization. Under some models, the circumstances under which genetic canalization evolves is limited, despite apparent empirical evidence for it. It has been argued that genetic canalization evolves as a correlated response to environmental canalization (congruence model). Yet, empirical evidence has not consistently supported predictions of a correlation between genetic and environmental canalization. In a recent study, a population of <em>Drosophila </em>adapted to high altitude showed evidence of genetic decanalization relative to those from low altitudes. Using strains derived from these populations, we tested if they varied for multiple aspects of environmental canalization We observed the expected differences in wing size, shape, cell (trichome) density and mutational defects between high- and low-altitude populations. However, we observed little evidence for a relationship between measures of environmental canalization with population or with defect frequency. Our results do not support the predicted association between genetic and environmental canalization.</p>

opencc-zeroJul 2020View details →
dryad40/100

Maternal and genetic correlations between morphology and physical performance traits in a small captive primate, Microcebus murinus

<p>Physical performance traits are key components of fitness and direct targets of selection. Maternal effects are important components of integrated phenotypes in a variety of species. Yet their contribution to variation in performance, and phenotypes closely associated with performance, remains poorly understood. We used an animal model approach to quantify the contribution of maternal effects to performance trait variation (in bite force and pull strength) and the relationships between performance and the relevant underlying morphology in <i>Microcebus murinus</i>. We show that bite force is heritable (h<sup>2</sup>~0.23), and that maternal effects are also important source of variation, resulting in a medium inclusive heritability (IH<sup>2</sup>~0.47). Grip strength presented a rather low and non-significant narrow-sense heritability suggesting a higher selective pressure on this trait. Genetic correlations between performance traits and their associated morphometric traits were significant and high (0.47 bite force-head width; 0.48 grip strength-radius length), as was the maternal correlation for bite force-head width (0.75). Further studies evaluating the heritability of performance for other taxa and the role of maternal effects are badly needed to better understand the drivers of variation in performance ultimately allowing for a better understanding of the importance of these types of traits in an evolutionary context.</p>

opencc-zeroDec 2020View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 15. Drawing of autocorrelation function and partial correlation of the residues for males and females primary stage students

<p>After diagnosing and evaluating the models, the accommodating and the sufficiency of the models must be checked for males and females of primary stage students, through applying the compute (Ljung-Box Q) to check the model accommodation on the Function level 0.05 so the Q value occurs of males and females of primary stage students: Ljung-Box Q&#39; = 1.10306, With p-value = P(Chi-square(1) &gt; 1.10306) = 0.2936 Note that the Tabulated value &nbsp; equals 3.841 while the Q value is less than &nbsp; Tabulated value, so it takes the Null Hypothesis which manifests that the emptiness of the evaluated model out of the contrast in accordance trouble. It&#39;s possible to notice that the two parameters functions (Autocorrelation and Partial correlation Functions) &nbsp;of the residues for male females primary stage, in which the residues &nbsp;value is located within confidence interval limits, which means the residues series is random and the evaluated model is good and convenient as it is presented.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 13. Drawing of autocorrelation Function and partial correlation of the residues for primary stage males students

<p>It&#39;s possible to notice the two parameters functions (Autocorrelation and Partial correlation Functions) of the residues for males primary stage, in which the residues &nbsp;value is located within the confidence interval limits which means the residues series is random and the Evaluated Model is good and convenient as it is presented.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm- Figure 12. Drawing of autocorrelation function and partial correlation for females primary stage students

<p>We use the Unit Radix Dickey-Fuller Test to ensure the series&rsquo; stability. The results are: Dickey-Fuller Test Estimated Value = 0.369693, Statistic Test =1.01829, P-Value=0.9194 We notice from the values above P-Value = 0.9194 on the abstract level of 0.05 which leads to accepting the Null Hypothesis and refusing the Alternative Hypothesis (Existence of a Radix Unit) implies that the time series is instable. By taking the first difference, we notice that the stability of the time series has been achieved. See Figure 11.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 10. Drawing of autocorrelation function and partial correlation for Males and Females primary stage students

<p>The instability of the time series is recognized, and to be more accurate, we draw each (Autocorrelation Function) ACF, and (Partial Autocorrelation Function) PACF in a row to assure the stability according to the figure (10).</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 14. Drawing of autocorrelation function and partial correlation of the residues for primary stage males students

<p>After diagnosing and evaluating the models, the accommodating and the sufficiency of the models must be checked for primary stage female students, through applying the compute (Ljung- Box Q) to check the model accommodation on the function level 0.05 so the Q value occurs of primary stage female students: Ljung-Box Q&#39; = 0.966626, With p-value = P(Chi-square(1) &gt; 0.966626) = 0.3255 However, the Tabulated value &nbsp; equals 3.841 whilst the Q value is less than Tabulated value, so it accepts the Null Hypothesis which indicates the emptiness of the evaluated model out of the contrast accordance trouble. It&#39;s possible to notice the two parameters functions (Autocorrelation and Partial Correlation Functions) &nbsp;of the residues for &nbsp;females primary stage students, in which the residues &nbsp;value is located within the confidence interval limits, which means the residues series is random and the evaluated model is good and convenient as it is shown.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 6. Drawing of auto correlation function and partial correlation for females primary stage students

<p>The instability of the time series is noticed and to be more precise we draw each (Autocorrelation Function) ACF, and (Partial Autocorrelation Function) PACF in a row to affirm the stability according to the figure 6.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 4. Drawing of autocorrelation function and partial correlation for males primary stage students

<p>We get to notice the stability of the time series, and to be more accurate we draw each (Autocorrelation Function) ACF, and (Partial Autocorrelation Function) PACF in a row to ensure the stability according to the figure (4).</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 8. Drawing of autocorrelation function and partial correlation for Females primary stage students

<p>The stability of the time series is observed and to be more accurate we draw each (Autocorrelation Function) ACF, and (Partial Autocorrelation Function) PACF in a row to assure the stability according to the figure (8).</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

The Prediction of the Rate of the Dropout of the Primary Schools Students by Using the Genetic Algorithm-Figure 2. Drawing of autocorrelation function and partial correlation for males primary stage

<p>We get to notice the instability of the time series, and to be more precise we draw each (Autocorrelation Function) ACF, and (Partial Autocorrelation Function) PACF in a row to ensure the stability according to the figure 2.</p>

opencc-by-4.0Apr 2018View details →
zenodo40/100

Supplementary table for "Deciphering the Relationship Between Circulating Metabolites and Osteoarthritis: A Comprehensive Genetic Correlation and Mendelian Randomization Studies"

Open the record for dataset details and reuse information.

opencc-by-4.0Nov 2024View details →
dryad40/100

Maternal and genetic correlations between morphology and physical performance traits in a small captive primate, Microcebus murinus

Open the record for dataset details and reuse information.

publicFeb 2022View details →
dryad40/100

Data from: Genetic and environmental canalization are not correlated among altitudinally varying populations of Drosophila melanogaster

Open the record for dataset details and reuse information.

publicJul 2020View details →
dryad36/100

Leg length and bristle density both necessary for water surface locomotion are genetically correlated in water striders

<p class="MsoNormal"><span>Access to hitherto unexploited ecological opportunities is associated with phenotypic evolution and often results in significant lineage diversification. Yet, our understanding of the mechanisms underlying such adaptive traits remains limited.  Water striders have been able to exploit the water-air interface, primarily facilitated by changes in the density of hydrophobic bristles and a significant increase in leg length. These two traits are functionally correlated and are both necessary for generating efficient locomotion on the water surface. Whether bristle density and leg length have any cellular or developmental genetic mechanisms in common is unknown. Here, we combine comparative genomics and transcriptomics with functional RNAi assays to examine the developmental genetic and cellular mechanisms underlying the patterning of the bristles and the legs in <em>Gerris buenoi</em> and <em>Mesovelia mulsanti,</em> two species of water striders. We found that two gene duplication events in the genes <em>beadex </em>and <em>taxi </em>led to a functional expansion of the paralogs to affect bristle density and leg length. We also identified genes for which no function in bristle development has been previously described in other insects. Interestingly, most of these genes play a dual role in regulating bristle development and leg length. In addition, these genes play a role in regulating cell division. This result suggests that cell division may be a common mechanism through which these genes can simultaneously regulate leg length and bristle density. We propose that pleiotropy, by which gene function affects the development of multiple traits, may play a prominent role in facilitating access to unexploited ecological opportunities and species diversification.</span></p> <p> </p>

opencc-zeroFeb 2022View details →
dryad36/100

Data from: Extra-pair paternity correlates with genetic diversity, but not breeding density, in a Neotropical passerine, the Black Catbird

<p>The frequency of extra-pair paternity (EPP) varies widely across socially monogamous birds, but the proximate mechanisms driving this variation remain unclear. In this study, we tested two major factors hypothesized to influence extra-pair mating—breeding density and genetic diversity—by comparing genetic mating patterns in two populations of black catbirds <em>Melanoptila glabrirostris</em>. This Neotropical songbird is endemic to the Yucatán Peninsula, including eastern Mexico, and its offshore islands. We sampled one mainland (Sian Ka'an Biosphere Reserve) and one island (Isla Cozumel) population and used single-nucleotide polymorphisms (SNPs) to quantify heterozygosity and genetic parentage over two breeding seasons. Moderate levels of EPP occurred in both populations (9.5 – 35% of offspring and 17 – 45% of nests). Contrary to predictions, breeding density did not affect EPP: although breeding densities were much higher on the mainland than on the island, EPP rates did not differ between populations, and local breeding density was not correlated with EPP at individual nests. In contrast, partial support emerged for the hypothesis that genetic diversity influences EPP: extra-pair offspring were more heterozygous than within-pair offspring. However, the two populations did not differ in genetic diversity, and neither the heterozygosity of social fathers nor within-pair relatedness predicted EPP. These results are consistent with recent comparative studies suggesting that breeding density is not a critical driver of EPP rates, and that not all tropical songbirds exhibit low rates of EPP.</p>

opencc-zeroOct 2022View details →
zenodo36/100

Cross-correlations and symmetries in genetic sequences

<p>Data sets and supporting material used in the manuscript</p> <p>"The common origin of symmetry and structure in genetic sequences" by<br> G. Cristadoro , M. Degli Esposti , E. G. Altmann<br> https://arxiv.org/abs/1710.02348</p> <p>Output of calculations can be seen in the file:<br> Notebook.html</p> <p>In order to repeat calculations or explore different choices:</p> <ol> <li>Download all files to the same directory</li> <li>Uncompress the "data.tar.gz" file (e.g., using tar -xzvf data.tar.gz)</li> <li>Open the Notebook using Python 3.0 in Jupyter (www.jupyter.org)</li> </ol> <p> </p>

opencc-by-4.0Dec 2016View details →
zenodo36/100

Result of LAVA-Knock: Genetic correlation via knockoffs removes confounding due to cross-trait assortative mating

<p>Results of application to GWAS summary statistics for 36 traits. 394,060 windows are used to perform LAVA-Bonf. 64,833 windows are used to conduct LAVA-Knock. At target FDR 0.1, LAVA-Knock detects 8,421 significant windows for 4,401 locus-phenotype pairs. LAVA-Bonf with threshold 0.05/394,060 identifies 10,802 windows for 6,260 locus-phenotype pairs.</p>

opencc-by-4.0Jun 2024View details →
dryad36/100

Data for: Limited host availability disrupts the genetic correlation between virulence and transmission

<p>Virulence is expected to be linked to parasite fitness via transmission. However, it is not clear whether this relationship is genetically determined, nor if it differs when transmission occurs continuously during, or only at the end of, the infection period. Here, we used inbred lines of the macro-parasitic spider mite <em>Tetranychus urticae</em> to disentangle genetic vs non-genetic correlations among traits, while varying parasite density and opportunities for transmission. A positive genetic correlation between virulence and the number of transmitting stages produced was found under continuous transmission. However, if transmission occurred only at the end of the infection period, this genetic correlation disappeared. Instead, we observed a negative relationship between virulence and the number of transmitting stages, driven by density dependence. Thus, within-host density dependence caused by reduced opportunities for transmission may hamper selection for higher virulence, providing a novel explanation as to why limited host availability leads to lower virulence.</p>

opencc-zeroDec 2022View details →

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