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89 results for “growth form”
Point-frame measurement of maximum canopy height for plant growth forms at the 2007 Anaktuvuk River Fire scar measured in 2019.
This file contains maximum plant heights from point frame measurements made in the southern section of the 2007 Anaktuvuk River fire scar, at a severely burned site and a nearby unburned site. Pin-vegetation contact was recorded using a 0.56 m2 frame with 41 evenly spaced sampling points. Data were collected during peak green in summer 2019. These data were used to examine the impact of post-fire changes in plant community composition and structure on habitat suitability and rodent herbivore activity in response to a large, severe, and unprecedented fire in northern Alaska moist acidic tussock tundra.
MCR LTER: Coral Reef: Growth-predation risk trade-offs constrain the local distribution of a thicket-forming staghorn coral to marginal reef habitats; Data for Ladd et al., 2025, Scientific Reports.
This dataset is in support of the manuscript: Growth-predation risk tradeoffs constrain the local distribution of a thicket-forming staghorn coral to marginal reef habitats. These data were collected to 1) document how Acropora pulchra is distributed around the island of Moorea, and 2) to better understand the ecological processes that shape that distribution. Data include 1) results from surveys around the island of Moorea documenting the presence and size distribution of Acropora pulchra thickets, 2) results from an experiment measuring the growth and survivorship of Acropora pulchra fragments in the presence and absence of fish predators at nearshore fringing reef sites and adjacent sites in the mid lagoon (n = 20 sites in total), and 3) ancillary data on nitrogen content and dN15 in the tissue of the macroalgae Turbinaria ornata, sediment accumulation, and corallivore biomass at the experimental sites. All data were collected in 2016 and 2017.
Far-infrared to millimeter data of protoplanetary disks: dust growth in the Taurus, Ophiuchus, and Chamaeleon I star-forming regions
<p>This repository contains the data set presented in the manuscript "Far-infrared to millimeter data of protoplanetary disks: dust growth in the Taurus, Ophiuchus, and Chamaeleon I star-forming regions" (Ribas et al. 2017), and includes a table with several sample properties (e.g. stellar properties, Herschel photometry, different spectral indices), spectral energy distributions, Spitzer/IRS and Herschel/SPIRE spectra, the median SEDs of Taurus, Ophiuchus and Chamaeleon I, and the Herschel maps used.</p> <p>ERRATUM: three Chamaeleon I sources (Hn 11, T45a, and WY Cha) were mislabeled in the original version of the manuscript, which resulted in their names, stellar parameters, extinction values, infrared slopes, and silicate feature properties being assigned to incorrect coordinates. Because the photometry and spectroscopy presented in the original article is coordinate- based, the provided SEDs and spectra were also missmatched: the data files labeled Hn 11 in the original manuscript correspond to T45a, those labeled T45a correspond to WY Cha, and those labeled WY Cha correspond to Hn 11. Additionally, due to a mislabeling issue in Manoj et al. 2011, the source formerly labeled UX Cha is actually CHSM 8284. Therefore, stellar parameters and photometry labeled UX Cha in our original manuscript correspond to CHSM 8284 The updated version of the repository fixes the issue both in the sample.csv file and in the individual SED and Spitzer/IRS spectra files. The published erratum is available here: <a href="https://iopscience.iop.org/article/10.3847/1538-4357/abb66e">https://iopscience.iop.org/article/10.3847/1538-4357/abb66e</a>.</p>
NMNH Botany Plant Habit Data: NMNH Plant Growth Form Data
<p>Plant growth form data from specimen labels in the collections of the Smithsonian National Museum of Natural History Botany Department, revised draft.</p> <p> </p> <p>Excel version, revised March 2018. Recoded measurement types and values to FLOPO uris whenever possible.</p>
Cellularity & Growth Form: Old Version
<p>Cellularity & growth form data derived from the following sources: </p> <p>Abdullin, S.R., Bagmet, V.B., Nikulin, A.Y., Nikulin, V.Y., Gorpenchenko, T.Y., Grishin, S.Y., Allaguvatova, R.Z. and Gontcharov, A.A., 2022. Emended description of the genus Eremochloris (Trebouxiophyceae, Chlorophyta), with Eremochloris kamchatica sp. nov. from Kamchatka, Russia. Phycologia, 61(2), pp.175-183. <a href="<p></p>https://doi.org/10.1080/00318884.2021.2024710"></a></p><p></p><a href="<p></p>https://doi.org/10.1080/00318884.2021.2024710">https://doi.org/10.1080/00318884.2021.2024710</a><p></p> <p>Adl, S.M., Bass, D., Lane, C.E., Lukeš, J., Schoch, C.L., Smirnov, A., Agatha, S., Berney, C., Brown, M.W., Burki, F., Cárdenas, P., Čepička, I., Chistyakova, L., Campo, J. del, Dunthorn, M., Edvardsen, B., Eglit, Y., Guillou, L., Hampl, V., Heiss, A.A., Hoppenrath, M., James, T.Y., Karnkowska, A., Karpov, S., Kim, E., Kolisko, M., Kudryavtsev, A., Lahr, D.J.G., Lara, E., Gall, L.L., Lynn, D.H., Mann, D.G., Massana, R., Mitchell, E.A.D., Morrow, C., Park, J.S., Pawlowski, J.W., Powell, M.J., Richter, D.J., Rueckert, S., Shadwick, L., Shimano, S., Spiegel, F.W., Torruella, G., Youssef, N., Zlatogursky, V., Zhang, Q., 2019. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology 66, 4–119. <a href="<p></p>https://doi.org/10.1111/jeu.12691"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/jeu.12691">https://doi.org/10.1111/jeu.12691</a><p></p> <p>Alberghina, J.S., Vigna, M.S., Confalonieri, V.A., 2006. Phylogenetic position of the Oedogoniales within the green algae (Chlorophyta) and the evolution of the absolute orientation of the flagellar apparatus. Plant Syst. Evol. 261, 151–163. <a href="<p></p>https://doi.org/10.1007/s00606-006-0449-2"></a></p><p></p><a href="<p></p>https://doi.org/10.1007/s00606-006-0449-2">https://doi.org/10.1007/s00606-006-0449-2</a><p></p> <p>Amaral, R., Fawley, K.P., Němcová, Y., Ševčíková, T., Lukešová, A., Fawley, M.W., Santos, L.M. and Eliáš, M., 2020. Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera. Journal of Phycology, 56(3), pp.630-648. <a href="<p></p>https://doi.org/10.1111/jpy.12980"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/jpy.12980">https://doi.org/10.1111/jpy.12980</a><p></p> <p>Andersen, R.A., 1987. Synurophyceae classis nov., a new class of algae. American journal of botany, 74(3), pp.337-353. <a href="<p></p>https://doi.org/10.2307/2443810"></a></p><p></p><a href="<p></p>https://doi.org/10.2307/2443810">https://doi.org/10.2307/2443810</a><p></p> <p>Antonio, M., Schulze-Makuch, D., 2012. Toward a New Understanding of Multicellularity. Hypotheses in the Life Sciences 2, 4–14. <a href="<p></p>http://www.hy-ls.org/index.php/hyls/article/view/89/0"></a></p><p></p><a href="<p></p>http://www.hy-ls.org/index.php/hyls/article/view/89/0">http://www.hy-ls.org/index.php/hyls/article/view/89/0</a><p></p> <p>Arneson, R.D., 1973. Pseudotetracystis, a new chlorosarcinean alga. Journal of Phycology, 9(1), pp.10-14. <a href="<p></p>https://doi.org/10.1111/j.1529-8817.1973.tb04056.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/j.1529-8817.1973.tb04056.x">https://doi.org/10.1111/j.1529-8817.1973.tb04056.x</a><p></p> <p>Aslam, Z., Shin, W., Kim, M.K., Im, W.T. and Lee, S.T., 2007. Marinichlorella kaistiae gen. et sp. nov.(Trebouxiophyceae, Chlorophyta) based on polyphasic taxonomy. Journal of Phycology, 43(3), pp.576-584. <a href="<p></p>https://doi.org/10.1111/j.1529-8817.2007.00345.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/j.1529-8817.2007.00345.x">https://doi.org/10.1111/j.1529-8817.2007.00345.x</a><p></p> <p>Badewitz, H. (2004). The genus Microcorycia Cockerell, 1911 (Testacealobosia, Rhizopoda, Protozoa). A critical monograph of the genus including a first description of a new species: Microcorycia scutella n. sp. Lauterbornia 50: 111-146. </p> <p>Bakker, M.E., De Jong, Y.S. and Lokhorst, G.M., 1997. The flagellar apparatus ultrastructure in Leptosira erumpens (Deason & Bold) lukesová and its contribution to the understanding of phylogenese relationships within the microthamniales (chlorophyta). Archiv für Protistenkunde, 148(1-2), pp.17-31. <a href="<p></p>https://doi.org/10.1016/S0003-9365(97)80033-4"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/S0003-9365(97)80033-4">https://doi.org/10.1016/S0003-9365(97)80033-4</a><p></p> <p>Barcytė, D., Hodač, L. and Nedbalová, L., 2017. Lunachloris lukesovae gen. et sp. nov.(Trebouxiophyceae, Chlorophyta), a novel coccoid green alga isolated from soil in South Bohemia, Czech Republic. European Journal of Phycology, 52(3), pp.281-291. <a href="<p></p>https://doi.org/10.1080/09670262.2017.1283541"></a></p><p></p><a href="<p></p>https://doi.org/10.1080/09670262.2017.1283541">https://doi.org/10.1080/09670262.2017.1283541</a><p></p> <p>Barsanti, L., Frassanito, A.M., Passarelli, V., Evangelista, V., Etebari, M., Paccagnini, E., Lupetti, P., Lenzi, P., Verni, F. and Gualtieri, P., 2013. Tetraflagellochloris mauritanica gen. et sp. nov.(Chlorophyceae), a new flagellated alga from the mauritanian desert: morphology, ultrastructure, and phylogenetic framing. Journal of Phycology, 49(1), pp.178-193. <a href="<p></p>https://doi.org/10.1111/j.1529-8817.2012.01232.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/j.1529-8817.2012.01232.x">https://doi.org/10.1111/j.1529-8817.2012.01232.x</a><p></p> <p>Bass, D., Chao, E.E.-Y., Nikolaev, S., Yabuki, A., Ishida, K., Berney, C., Pakzad, U., Wylezich, C., Cavalier-Smith, T., 2009. Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised. Protist 160, 75–109. <a href="<p></p>https://doi.org/10.1016/j.protis.2008.07.002"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/j.protis.2008.07.002">https://doi.org/10.1016/j.protis.2008.07.002</a><p></p> <p>Becker, B., Marin, B., 2009. Streptophyte algae and the origin of embryophytes. Annals of Botany 103, 999–1004. <a href="<p></p>https://doi.org/10.1093/aob/mcp044"></a></p><p></p><a href="<p></p>https://doi.org/10.1093/aob/mcp044">https://doi.org/10.1093/aob/mcp044</a><p></p> <p>Bernard, Catherine, Alastair G. B. Simpson & David J. Patterson (2000) Some free-living flagellates (protista) from anoxic habitats Ophelia 52(2):113-142. <a href="<p></p>https://doi.org/10.1080/00785236.1999.10409422"></a></p><p></p><a href="<p></p>https://doi.org/10.1080/00785236.1999.10409422">https://doi.org/10.1080/00785236.1999.10409422</a><p></p> <p>Berney, C., Geisen, S., Van Wichelen, J., Nitsche, F., Vanormelingen, P., Bonkowski, M. and Bass, D., 2015. Expansion of the __reticulosphere__: diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist, 166(2):271-295. <a href="<p></p>https://doi.org/10.1016/j.protis.2015.04.001"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/j.protis.2015.04.001">https://doi.org/10.1016/j.protis.2015.04.001</a><p></p> <p>Biard, T., 2022. Diversity and ecology of Radiolaria in modern oceans. Environmental Microbiology 24, 2179–2200. <a href="<p></p>https://doi.org/10.1111/1462-2920.16004"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/1462-2920.16004">https://doi.org/10.1111/1462-2920.16004</a><p></p> <p>Blackwell, W.H., Letcher, P.M. and Powell, M.J., 2019. Review of Nucleophaga (a primitive,__cryptomycotan__genus): Summary of named and unnamed species, with discussion of contemporary and historical observations. Phytologia, 101, pp.1-18. </p> <p>Bock, C., Luo, W., Kusber, W.H., Hegewald, E., Pažoutová, M. and Krienitz, L., 2013. Classification of crucigenoid algae: phylogenetic position of the reinstated genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta). Journal of Phycology, 49(2), pp.329-339. <a href="<p></p>https://doi.org/10.1111/jpy.12039"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/jpy.12039">https://doi.org/10.1111/jpy.12039</a><p></p> <p>Bovee, E.C. and Sawyer, T.K., 1979. Marine Flora and Fauna of the Northeastern United States: Protozoa, Sarcodina, Amoebae (Vol. 419). Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service. </p> <p>Bovee, E.C., 1953. Oscillosignum nov. gen. proboscidium nov. sp., type form of its genus, family Mayorellidae, order Amoebida. Transactions of the American Microscopical Society, 72(4):328-332. <a href="<p></p>https://doi.org/10.2307/3223477"></a></p><p></p><a href="<p></p>https://doi.org/10.2307/3223477">https://doi.org/10.2307/3223477</a><p></p> <p>Bovee, E.C., 1985. The lobose amebas: III. Descriptions of nine new conopodous amebas of the genus Vexillifera Schaeffek, 1926, emd. Bovee 1951, 1970, with comments on the genus. Archiv für Protistenkunde, 129(1-4):101-118. <a href="<p></p>https://doi.org/10.1016/S0003-9365(85)80013-0"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/S0003-9365(85)80013-0">https://doi.org/10.1016/S0003-9365(85)80013-0</a><p></p> <p>Brown, M.W., Silberman, J.D. (2013). The Non-dictyostelid Sorocarpic Amoebae. In: Romeralo, M., Baldauf, S., Escalante, R. (eds) Dictyostelids. Springer, Berlin, Heidelberg. <a href="<p></p>https://doi.org/10.1007/978-3-642-38487-5_12"></a></p><p></p><a href="<p></p>https://doi.org/10.1007/978-3-642-38487-5_12">https://doi.org/10.1007/978-3-642-38487-5_12</a><p></p> <p>Buchheim, M.A., Michalopulos, E.A. and Buchheim, J.A., 2001. Phylogeny of the Chlorophyceae with special reference to the Sphaeropleales: a study of 18S and 26S rDNA data. Journal of Phycology, 37(5), pp.819-835. <a href="<p></p>https://doi.org/10.1046/j.1529-8817.2001.00162.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1046/j.1529-8817.2001.00162.x">https://doi.org/10.1046/j.1529-8817.2001.00162.x</a><p></p> <p>Burki, F., Roger, A.J., Brown, M.W., Simpson, A.G.B., 2020. The New Tree of Eukaryotes. Trends in Ecology & Evolution 35, 43–55. <a href="<p></p>https://doi.org/10.1016/j.tree.2019.08.008"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/j.tree.2019.08.008">https://doi.org/10.1016/j.tree.2019.08.008</a><p></p> <p>Bush, M.J., Gallagher, K.A., Chandra, G., Findlay, K.C. and Schlimpert, S., 2022. Hyphal compartmentalization and sporulation in Streptomyces require the conserved cell division protein SepX. Nature Communications, 13(1), pp.1-13. <a href="<p></p>https://doi.org/10.1038/s41467-021-27638-1"></a></p><p></p><a href="<p></p>https://doi.org/10.1038/s41467-021-27638-1">https://doi.org/10.1038/s41467-021-27638-1</a><p></p> <p>Caisová, L., Marin, B., Sausen, N., Pröschold, T. and Melkonian, M., 2011. Polyphyly of Chaetophora and Stigeoclonium within the chaetophorales (Chlorophyceae), revealed by sequence comparisons of nuclear-encoded SSU rRNA genes. Journal of Phycology, 47(1), pp.164-177. <a href="<p></p>https://doi.org/10.1111/j.1529-8817.2010.00949.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/j.1529-8817.2010.00949.x">https://doi.org/10.1111/j.1529-8817.2010.00949.x</a><p></p> <p>Carr, M., Leadbeater, B. S., Hassan, R., Nelson, M., & Baldauf, S. L. (2008). Molecular phylogeny of choanoflagellates, the sister group to Metazoa. Proceedings of the National Academy of Sciences of the United States of America, 105(43):16641–16646. <a href="<p></p>https://doi.org/10.1073/pnas.0801667105"></a></p><p></p><a href="<p></p>https://doi.org/10.1073/pnas.0801667105">https://doi.org/10.1073/pnas.0801667105</a><p></p> <p>Cavalier-Smith, T., 1998. A revised six-kingdom system of life. Biological Reviews, 73(3), pp.203-266. <a href="<p></p>https://doi.org/10.1017/S0006323198005167"></a></p><p></p><a href="<p></p>https://doi.org/10.1017/S0006323198005167">https://doi.org/10.1017/S0006323198005167</a><p></p> <p>Cavalier-Smith, T., Chao, E.E.-Y., 2003. Phylogeny and Classification of Phylum Cercozoa (Protozoa). Protist 154, 341–358. <a href="<p></p>https://doi.org/10.1078/143446103322454112"></a></p><p></p><a href="<p></p>https://doi.org/10.1078/143446103322454112">https://doi.org/10.1078/143446103322454112</a><p></p> <p>Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388–420. <a href="<p></p>https://doi.org/10.1007/s00239-004-0353-8"></a></p><p></p><a href="<p></p>https://doi.org/10.1007/s00239-004-0353-8">https://doi.org/10.1007/s00239-004-0353-8</a><p></p> <p>Cavalier-Smith, T., Chao, E.E., Lewis, R., 2016. 187-gene phylogeny of protozoan phylum Amoebozoa reveals a new class (Cutosea) of deep-branching, ultrastructurally unique, enveloped marine Lobosa and clarifies amoeba evolution. Molecular Phylogenetics and Evolution 99, 275–296. <a href="<p></p>https://doi.org/10.1016/j.ympev.2016.03.023"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/j.ympev.2016.03.023">https://doi.org/10.1016/j.ympev.2016.03.023</a><p></p> <p>Chardez D., Beyens L. (1988). Centropyxis gasparella sp.nov. and Parmulina louisi sp.nov., new testate amoebae from the Canadian High Arctic (Devon Island, NWT). Arch. Protistenkd. 136:337–344. <a href="<p></p>https://doi.org/10.1016/S0003-9365(88)80014-9"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/S0003-9365(88)80014-9">https://doi.org/10.1016/S0003-9365(88)80014-9</a><p></p> <p>Cheng, S., Xian, W., Fu, Y., Marin, B., Keller, J., Wu, T., Sun, W., Li, X., Xu, Y., Zhang, Y. and Wittek, S., 2019. Genomes of subaerial Zygnematophyceae provide insights into land plant evolution. Cell, 179(5), pp.1057-1067. <a href="<p></p>https://doi.org/10.1016/j.cell.2019.10.019"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/j.cell.2019.10.019">https://doi.org/10.1016/j.cell.2019.10.019</a><p></p> <p>Chihara, M., Inouye, I. and Takahata, N., 1986. Oltmannsiellopsis, a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae). Archiv für Protistenkunde, 132(4), pp.313-324. <a href="<p></p>https://doi.org/10.1016/S0003-9365(86)80026-4"></a></p><p></p><a href="<p></p>https://doi.org/10.1016/S0003-9365(86)80026-4">https://doi.org/10.1016/S0003-9365(86)80026-4</a><p></p> <p>Clamp, J.C. and Williams, D., 2006. A Molecular Phylogenetic Investigation of Zoothamnium (Ciliophora, Peritrichia, Sessilida) 1. Journal of Eukaryotic Microbiology, 53(6), pp.494-498. <a href="<p></p>https://doi.org/10.1111/j.1550-7408.2006.00132.x"></a></p><p></p><a href="<p></p>https://doi.org/10.1111/j.1550-7408.2006.00132.x">https://doi.org/10.1111/j.1550-7408.2006.00132.x</a><p></p> <p>Cocquyt, E., Verbruggen, H., Leliaert, F., De Clerck, O., 2010. Evolution and Cytological Diversification of the Green Seaweeds (Ulvophyceae). 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Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–20. <a href="<p></p>https://doi.org/10.1007/978-3-319-32669-6_36-1"></a></p><p></p><a href="<p></p>https://doi.org/10.1007/978-3-319-32669-6_36-1">https://doi.org/10.1007/978-3-319-32669-6_36-1</a><p></p> <p>Darienko T, Rad-Menéndez C, Campbell CN, Pröschold T. 2021. Molecular Phylogeny of Unicellular Marine Coccoid Green Algae Revealed New Insights into the Systematics of the Ulvophyceae (Chlorophyta). Microorganisms 9(8):1586. <a href="<p></p>https://doi.org/10.3390/microorganisms9081586"></a></p><p></p><a href="<p></p>https://doi.org/10.3390/microorganisms9081586">https://doi.org/10.3390/microorganisms9081586</a><p></p> <p>Darienko, T., Gustavs, L. and Pröschold, T., 2016. 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Cellularity & Growth Form Data Version April 2023
<p>Cellularity & growth form data derived from the following sources: </p> <p>Abdullin, S.R., Bagmet, V.B., Nikulin, A.Y., Nikulin, V.Y., Gorpenchenko, T.Y., Grishin, S.Y., Allaguvatova, R.Z. and Gontcharov, A.A., 2022. Emended description of the genus Eremochloris (Trebouxiophyceae, Chlorophyta), with Eremochloris kamchatica sp. nov. from Kamchatka, Russia. 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Autumnella lusatica gen. nov. and sp. nov.(Chlorophyta, Trebouxiophyceae), a new phytoplankton species in acidic lignite pit lakes. Phycologia, 57(3), pp.251-261. <a href="https://doi.org/10.2216/17-46.1">https://doi.org/10.2216/17-46.1</a></p> <p>Umen J. G. (2014). Green algae and the origins of multicellularity in the plant kingdom. Cold Spring Harbor perspectives in biology, 6(11), a016170. <a href="https://doi.org/10.1101/cshperspect.a016170">https://doi.org/10.1101/cshperspect.a016170</a></p> <p>Ustinova I, Krienitz L, Huss VAR. 2000. Hyaloraphidium curvatum is not a green alga, but a lower fungus; Amobedium parasiticum is not a fungus, but a member of the DRIPs. Protist 151:253–262. <a href="https://doi.org/10.1078/1434-4610-00023">https://doi.org/10.1078/1434-4610-00023</a></p> <p>Van Wichelen, J., D__hondt, S., Claeys, M., Vyverman, W., Berney, C., Bass, D. and Vanormelingen, P., 2016. A hotspot of amoebae diversity: 8 new naked amoebae associated with the planktonic bloom-forming cyanobacterium Microcystis. Acta Protozoologica, 55(2):61-87. <a href="https://doi.org/10.4467/16890027AP.16.007.4942">https://doi.org/10.4467/16890027AP.16.007.4942</a></p> <p>Vančurová, L., Peksa, O., Němcová, Y. and Škaloud, P., 2015. Vulcanochloris (Trebouxiales, Trebouxiophyceae), a new genus of lichen photobiont from La Palma, Canary Islands, Spain. Phytotaxa, 219(2), pp.118-132. <a href="http://dx.doi.org/10.11646/phytotaxa.219.2.2">http://dx.doi.org/10.11646/phytotaxa.219.2.2</a></p> <p>Vavra, J. and Kucera, K., 1970. Pneumocystis carinii Delanoe, its ultrastructure and ultrastructural affinities. The Journal of protozoology, 17(3), pp.463-483. <a href="https://doi.org/10.2307/2463980">https://doi.org/10.2307/2463980</a></p> <p>Vega, F.E. and Kaya, H.K., 2012. Insect pathology. Academic press. Verbruggen, H., Ashworth, M., LoDuca, S.T., Vlaeminck, C., Cocquyt, E., Sauvage, T., Zechman, F.W., Littler, D.S., Littler, M.M., Leliaert, F. and De Clerck, O., 2009. A multi-locus time-calibrated phylogeny of the siphonous green algae. Molecular phylogenetics and evolution, 50(3), pp.642-653. <a href="https://doi.org/10.1016/j.ympev.2008.12.018">https://doi.org/10.1016/j.ympev.2008.12.018</a></p> <p>Visnovsky, G. & P. M. Novis, 2012. Novel alpine algae from New Zealand: Chlorophyta. Phytotaxa 39, 1-30. <a href="https://doi.org/10.11646/phytotaxa.39.1.1">https://doi.org/10.11646/phytotaxa.39.1.1</a></p> <p>Walker, G., Dorrell, R., Schlacht, A., Dacks, J., 2011. Eukaryotic systematics: A user__s guide for cell biologists and parasitologists. Parasitology 138, 1638–63. <a href="https://doi.org/10.1017/S0031182010001708">https://doi.org/10.1017/S0031182010001708</a></p> <p>Watanabe, S. and Lewis, L.A., 2017. Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy. Phycologia, 56(3), pp.329-353. <a href="https://doi.org/10.2216/16-64.1">https://doi.org/10.2216/16-64.1</a></p> <p>Watanabe, S. and Nakayama, T., 2007. Ultrastructure and phylogenetic relationships of the unicellular green algae Ignatius tetrasporus and Pseudocharacium americanum (Chlorophyta). Phycological Research, 55(1), pp.1-16. <a href="https://doi.org/10.1111/j.1440-1835.2006.00439.x">https://doi.org/10.1111/j.1440-1835.2006.00439.x</a></p> <p>Watanabe, S., 1981. Observations on Urnella terrestris PLAYFAIR (Chlorophyceae, Chlorococcales) in culture. Phycologia, 20(1), pp.12-15. <a href="https://doi.org/10.2216/i0031-8884-20-1-12.1">https://doi.org/10.2216/i0031-8884-20-1-12.1</a></p> <p>Watanabe, S., Fučíková, K., Lewis, L.A. and Lewis, P.O., 2016. Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov.(Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza. American Journal of Botany, 103(5), pp.865-875. <a href="https://doi.org/10.3732/ajb.1500481">https://doi.org/10.3732/ajb.1500481</a></p> <p>Watanabe, S., Mitui, K., Nakayama, T. and Inouye, I., 2002. Phylogenetic analyses of the species of Chlorosarcinopsis and Neochlorosarcina (Chlorophyceae). Journal of Phycology, 38, pp.36-36. <a href="https://doi.org/10.1046/j.1529-8817.38.s1.103.x">https://doi.org/10.1046/j.1529-8817.38.s1.103.x</a></p> <p>Wetherbee, R. and Verbruggen, H., 2016. Kraftionema allantoideum, a new genus and family of Ulotrichales (Chlorophyta) adapted for survival in high intertidal pools. Journal of Phycology, 52(5), pp.704-715. <a href="https://doi.org/10.1111/jpy.12447">https://doi.org/10.1111/jpy.12447</a></p> <p>Wetherbee, R., Bringloe, T.T., Costa, J.F., van de Meene, A., Andersen, R.A. and Verbruggen, H., 2021. New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class. Journal of Phycology, 57(2), pp.396-411. <a href="https://doi.org/10.1111/jpy.13074-20-137">https://doi.org/10.1111/jpy.13074-20-137</a></p> <p>Wetherbee, R., Jackson, C.J., Repetti, S.I., Clementson, L.A., Costa, J.F., van de Meene, A., Crawford, S. and Verbruggen, H., 2019. The golden paradox–a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of phycology, 55(2), pp.257-278. <a href="https://doi.org/10.1111/jpy.12822">https://doi.org/10.1111/jpy.12822</a></p> <p>Wolf, M., Buchheim, M., Hegewald, E., Krienitz, L. and Hepperle, D., 2002. Phylogenetic position of the Sphaeropleaceae (Chlorophyta). Plant Systematics and Evolution, 230(3), pp.161-171. <a href="https://doi.org/10.1007/s006060200002">https://doi.org/10.1007/s006060200002</a></p> <p>Wujek, D.E. The first occurrence of the coccoid green alga Borodinella polytetras. Miller in North America (Michigan). Great Lakes Bot. 59(3-4):94-98. <a href="http://hdl.handle.net/2027/spo.0497763.0058.107">http://hdl.handle.net/2027/spo.0497763.0058.107</a></p> <p>Wujek, D.E., 2016. The chlorococcalean Green Alga Hydrianum Rabenhorst from North America (Kansas and Michigan). Transactions of the Kansas Academy of Science, 119(1), pp.105-108. <a href="https://www.jstor.org/stable/24887848">https://www.jstor.org/stable/24887848</a></p> <p>Yoon H.S. et al. (2016) Rhodophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_33-1">https://doi.org/10.1007/978-3-319-32669-6_33-1</a></p>
Data from: Tree growth-forms reveal dominant browsers shaping the vegetation
<p>This data repository belongs to the publication "Tree growth-forms reveal dominant browsers shaping the vegetation" by Churski et al. in Functional Ecology</p> <p>Authors Marcin Churski<sup>1</sup>, Dries P.J. Kuijper<sup>1</sup>, Katharina Semmelmayer<sup>1</sup>, William J. Bond<sup>2</sup>, Joris P.G.M. Cromsigt<sup>3</sup><sup>,</sup><sup>4</sup>, Yan Wang<sup>5</sup> & Tristan Charles-Dominique<sup>6</sup><sup>,</sup><sup>7</sup></p> <p>Author for correspondence: Marcin Churski email: <a href="mailto:mchurski@ibs.bialowieza.pl">mchurski@ibs.bialowieza.pl</a></p> <p><sup>1</sup>Mammal Research Institute Polish Academy of Sciences, ul. Stoczek 1, 17-230 Białowieża; <sup>2</sup>University of Cape Town, HW Pearson Building, University Ave N, Rondebosch, Cape Town, 7701; <sup>3</sup>SLU, Department of Wildlife, Fish and Environmental Studies, 901 83 Umeå, Sweden; <sup>4</sup>Centre for African Conservation Ecology, Department of Zoology, Nelson Mandela University, PO Box 77000, Gqeberha, 6031, South Africa; <sup>5</sup>Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland; <sup>6</sup>AMAP, University of Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France; <sup>7</sup>CNRS UMR7618; Sorbonne University; Institute of Ecology and Environmental Sciences Paris; 4, place Jussieu 75005 PARIS</p> <div> <h4>Summary</h4> <a href="https://github.com/mripasteam/transformers#summary"></a></div> <ul> <li>Plants adopt particular growth-forms when they are exposed to extreme environmental conditions. In this study, we describe a unique woody plant growth-form induced by large mammalian herbivores and discuss that this growth-form could have evolved as a strategy for escaping the browser zone in herbivore driven ecosystems.</li> <li>We analysed responses of key architectural and morphological attributes (branching and thorn density, tree dimensions, presence of flowers and fruits) of three Eurasian spiny tree species (Malus sylvestris, Prunus cerasifera, Pyrus pyraster) to different levels of browsing by large herbivores in the temperate Białowieża Forest, Poland.</li> <li>Under high browsing pressure, studied trees displayed two distinct forms of the crown: a bottom sterile part developing into a densely branched structure with high density of thorns (‘cage-form’), and an upper reproductive part that escaped from herbivore control (‘escaped-form’). The size of cage-form influenced the feeding behaviour of red deer (Cervus elaphus) by increasing the time deer spend foraging and increasing the bite rate. The height at which cages started to escape and their diameter matched with foraging reach of red deer.</li> <li>Synthesis. We argue that the frequency and cage dimensions of this woody growth-form in the landscape could inform on the type and intensity of recent herbivory. Moreover, its distinctive inducibility suggests that this growth-form did not emerge recently under anthropogenic pressure but could be the legacy of ancient herbivory effects. Observational evidence suggests that this growth-form emerged in several herbivore-driven systems around the globe and may be used to identify the dominant herbivores that control vegetation structure in these ecosystems.</li> </ul> <p>Data</p> <p>The table 'cage_traits.csv' contains data on morphological traits measured on individual trees and was used to describe the key architectural attributes defining the cage and escape forms (trapped branches vs. escaped branches), test if the cage form is induced by mammalian herbivores or not and if the dimensions of the cage form could inform on which animal induced them.</p> <div> <pre><code>Column headers description: N_Protocol: Tree ID Status: if the tree individual grow taller than animal reach (escaped or trapped) Species: tree species Branch_N: observed branch ID Length: branch length (cm) N_Thorns: number of thorns N_Twigs: number of twigs Longest_thorn: the length of longest thorn on the branch (mm) N_browsed_Twigs: Number of browsed twigs (1) vs non browsed (0) twigs on a branch Branch_esc: branch position, "escape" indicates the branch growing on the escaped part of a tree FlowerOrFruit: flower or fruit number found on the branch BDI: branch density index. It is calculated by twigs number divided by branch length Thorn_density:Thorn number divided by branch length BrowRate: observed number of browsed_Twigs divided by branch length Bite: 1 indicates the branch was browsed, 0 indicated the branch was not browsed. browsing_environment: if the tree is exposed to high browsing environment or not. </code></pre> <div> </div> </div> <p>The table 'foraging_time_barplot.csv' contains camera trap data on total foraging time of all the animal on all the tree species and was used to answer the question how the presence of cage form affect herbivore foraging behaviour. This data set was specifically used to produce the bar plot in Figure 5C.</p> <div> <pre><code>Column headers description: N_Protocol : Tree ID animal_species : observed animal species Species: tree species Foraging_time: observed total foraging time. </code></pre> <div> </div> </div> <p>The table 'foraging_time.csv' contains camera trap data on total foraging time of all the animal on all the tree species and was used to answer the question how the presence of cage form affect herbivore foraging behaviour.</p> <div> <pre><code>Column headers description: N_Protocol: Tree ID Total_foraging_time: total record foraging time per tree individual Total_bite_rate : bite rate per tree individual Bite_rate : bite rate per tree branch BDI: branch density index. Foraging_time_av: record foraging time per tree branch Surface: the surface of the crown </code></pre> <div> </div> </div> <p>The table 'escape_height.csv' contains data on individual tree heights in relation to their status (escaped vs trapped). This data set was used to test if the dimensions of the cage form could inform on which animal induced them.</p> <div> <pre><code>Column headers description: N_Protocol: Tree ID Status: if the tree individual grow taller than animal reach Species: Tree species Height: Tree height</code></pre> </div>
Plant Growth Form Data from NMNH Botany specimens
<p>Plant growth form data from specimen labels in the collections of the Smithsonian National Museum of Natural History Botany Department, current version</p>
Dataset for "On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles"
<p>Data for Kulmala et al. (2024 )"On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles" (https://doi.org/10.5194/ar-2024-14).</p> <p>Included in the file are number concentrations of sub-2 nm ions and 2-2.3 nm ions measured with Cluster Ion Counter (CIC) and Neutral cluster and Air Ion Spectrometer (NAIS) at SMEAR II station in Hyytiälä, Finland. Concentrations of 1-2 nm ions measured with the NAIS are also included. Sub-2 nm (2-2.3 nm) ion concentrations measured with CIC are refered as Channel 1 (Channel 2-Channel 3) in the .csv file.</p> <p>Contact Santeri Tuovinen (santeri.tuovinen@helsinki.fi) for more details.</p>
Growth form and leaf habit drive contrasting effects of Arctic amplification in long-lived woody species
<p><strong>Raw_and_STD_Chronologies.txt</strong> contains the raw (suffix "_raw") and indexed (suffix "_std") ring-width chronology derived from seven species (<em>Juniperus communis</em> L., <em>Betula nana</em> L., <em>Salix lanata</em> L., <em>Picea abies</em> L., <em>Pinus contorta</em> Douglas, <em>Betula pubescens</em> Ehrh., and <em>Sorbus aucuparia</em> L.) collected from ten sites located across Iceland. In the file, each column addresses the chronology belonging to a precise site and species, coded following the one used in the International Tree-Ring Data Bank (ITRDB) as listed in Grissino_Mayer (1993). This data was used to model growth trends and to perform climate-growth associations over the 1967-2018 period.</p>
Data and scripts for the analysis of the influence of crop pollinator dependence and growth form on yield decline
<p>Marcelo A. Aizen, Gabriela R. Gleiser, Thomas Kitzberger, Ruben Milla. <strong>Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependence </strong>(to be submitted to PCI)</p> <p> </p> <p>Data and R scripts to reproduce the analyses and the figures shown in the paper. All analyses were performed using R 4.0.2.</p> <p> </p> <p><strong>Data</strong></p> <p>1. FAOdata_21-12-2021.csv</p> <p>This file includes yearly data (1961-2020, column 8) on yield and cultivated area (columns 6 and 10) at the country, sub-regional, and regional levels (column 2) for each crop (column 4) drawn from the United Nations Food and Agriculture Organization database (data available at <a href="http://www.fao.org/faostat/en">http://www.fao.org/faostat/en</a>; accessed July 21-12-2021). [Used in Script 1 to generate the synthesis dataset]</p> <p>2. countries.csv</p> <p>This file provides information on the region (column 2) to which each country (column 1) belongs. [Used in Script 1 to generate the synthesis dataset]</p> <p>3. dependence.csv</p> <p>This file provides information on the pollinator dependence category (column 2) of each crop (column 1).</p> <p>4. traits.csv</p> <p>This file provides information on the traits of each crop other than pollinator dependence, including, besides the crop name (column1), the variables type of harvested organ (column 5) and growth form (column 6). [Used in Script 1 to generate the synthesis dataset]</p> <p>5. dataset.csv</p> <p>The synthesis dataset generated by Script 1.</p> <p>6. growth.csv</p> <p>The yield growth dataset generated by Script 1 and used as input by Scripts 2 and 3.</p> <p>7. phylonames.csv</p> <p>This file lists all the crops (column 1) and their equivalent tip names in the crop phylogeny (column 2). [Used in Script 2 for the phylogenetically-controlled analyses]</p> <p>8.phylo137.tre</p> <p>File containing the phylogenetic tree.</p> <p> </p> <p><strong>Scripts</strong></p> <p>1. dataset</p> <p>This R script curates and merges all the individual datasets mentioned above into a single dataset, estimating and adding to this single dataset the growth rate for each crop and country, and the (log) cumulative harvested area per crop and country over the period 1961-2020.</p> <p>2. analyses</p> <p>This R script includes all the analyses described in the article’s main text.</p> <p>3. figures</p> <p>This R script creates all the main and supplementary figures of this article.</p> <p>4. lme4_phylo_setup</p> <p>R function written by Li and Bolker (2019) to carry out phylogenetically-controlled generalized linear mixed-effects models as described in the main text of the article.</p> <p> </p> <p><strong>References</strong></p> <p>Li, M., and B. Bolker. 2019. wzmli/phyloglmm: First release of phylogenetic comparative analysis in lme4- verse. Zenodo. https://doi.org/10.5281/zenodo.2639887.</p>
Global leaf sulphur stoichiometry and the relationships with nitrogen and phosphorus: phylogeny, growth form and environmental controls
<p>Sulphur (S) is an essential bioelement with vital roles in serving regulatory and catalytic functions, and tightly coupled with N and P in plants. However, globally stoichiometric patterns of leaf S and its relationships to leaf N and P are less well studied. We compiled 31,939 records of leaf-based data for 2,600 plant species across 6,652 sites worldwide. All plant species were divided into different phylogenetic taxa and growth forms. Standard major axis analysis was employed to fit the bivariate element relationships. A phylogenetic linear mixed effect model and a multiple regression model were used to partition the variations of bioelements into phylogeny and environments, and then to estimate the importance of environmental variables. Global geometric mean leaf S, N and P concentrations were 1.44, 15.70 and 1.27 mg g-1, with significant differences among plant groups. Leaf S-N-P positively correlated to each other, ignoring plant groups. The scaling exponents of LN-LS, LP-LS and LN-LP were 0.64, 0.76 and 0.79 for all species, but differed among plant groups. Both phylogeny and environments regulated the bioelements. The variability, rather than mean temperature controlled the bioelements. Phylogeny explained more for the concentrations of all the three bioelements than environments, of which S was the one most affected by phylogenetic taxa.</p>
Endogenous rhythmic growth modulates priming of antiherbivore defenses in subsequently formed new leaves of oak trees
<ul> <li>Priming of plant defenses provides increased plant protection against herbivores and reduces the allocation costs of defense. Defense priming in woody plants remains obscure, in particular due to plant development traits such as the endogenous rhythmic growth displayed by oaks (<em>Quercus robur</em>).</li> <li>By using bioassays with oak microcuttings, and by combining transcriptomic and metabolomic analyses, we investigated how leaf herbivory by <em>Lymantria dispar</em> and root inoculation with the ectomycorrhizal fungus <em>Piloderma croceum</em> prime oak defenses. We further investigated how defense priming is modulated by rhythmic growth of the oaks.</li> <li>A first herbivory challenge in oak leaves primed newly grown leaves for an enhanced induction of jamonic acid (JA)-related direct defenses, or enhanced emission of volatiles, depending on the specific growth stage at which the plants where challenged. Root inoculation with <em>Piloderma</em> abolished the enhanced induction of JA-related defenses and volatile emission.</li> <li>Our results indicate that a first herbivore attack primes direct and indirect defenses of newly formed oak leaves, and that the specific display of defense priming is modulated by rhythmic growth. Our results further show that the priming memory in oaks can be transmitted to the next growth cycle - even to the leaves of the new shoot unit.</li> </ul>
Trait Spreadsheet to DwCA: Cellularity and growth form
<p></p>https://eol-jira.bibalex.org/browse/DATA-1882<p></p>Updated: 2022-12-31 07:28
Hydraulic prediction of drought-induced plant dieback and top-kill depends on leaf habit and growth form
<p>Hydraulic failure caused by severe drought contributes to aboveground dieback and whole-plant death. The extent to which dieback or whole-plant death can be predicted by plant hydraulic traits has rarely been tested among species with different leaf habits and/or growth forms. We investigated 19 hydraulic traits in 40 woody species in a tropical savanna and their potential correlations with drought response during an extreme drought event during the El Niño–Southern Oscillation in 2015. Plant hydraulic trait variation was partitioned substantially by leaf habit but not growth form along a trade-off axis between traits that support drought tolerance versus avoidance. Semi-deciduous species and shrubs had the highest branch dieback and top-kill (complete aboveground death) among the leaf habits or growth forms. Dieback and top-kill were well explained by combining hydraulic traits with leaf habit and growth form, suggesting integrating life history traits with hydraulic traits will yield better predictions.</p>
Dominant plant species in different growth form categories in various ecosystem types
<p>The table contains a list of vegetation parameter values of dominant plant species in different growth form categories in various ecosystem types based on their importance value indices (IVI) (max. IVI for tree and pole category = 300; max. IVI for sapling and seedling category = 200) in Bantimurung Bulusaraung National Park (BBNP) and Hasanuddin University Educational Forest (HUEF), South Sulawesi.</p>
Dominant plant species in different growth form categories in various ecosystem types
<p>The table contains a list of vegetation parameter values of dominant plant species in different growth form categories in various ecosystem types based on their importance value indices (IVI) (max. IVI for tree and pole category = 300; max. IVI for sapling and seedling category = 200) in Bantimurung Bulusaraung National Park (BBNP) and Hasanuddin University Educational Forest (HUEF), South Sulawesi.</p>
Hydraulic prediction of drought-induced plant dieback and top-kill depends on leaf habit and growth form
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Global leaf sulphur stoichiometry and the relationships with nitrogen and phosphorus: phylogeny, growth form and environmental controls
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Data from: The unfolding of plant growth form-defence syndromes along elevation gradients
Understanding the functional economics that drives plant investment of resources requires investigating the interface between plant phenotypes and the variation in ecological conditions. While allocation to defence represents a large portion of the carbon budget, this axis is usually neglected in the study of plant economic spectrum. Using a novel geometrical approach, we analysed the co‐variation in a comprehensive set of functional traits related to plant growth strategies, as well as chemical defences against herbivores on all 15 Cardamine species present in the Swiss Alps. By extracting geometrical information of the functional space, we observed clustering of plants into three main syndromes. Those different strategies of growth form and defence were also distributed within distinct elevational bands demonstrating an association between the functional space and the ecological conditions. We conclude that plant strategies converge into clear syndromes that trade off abiotic tolerance, growth and defence within each elevation zone.
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