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70 results for “haplotype network”
Fig. 2. Haplotype network calculated from the E in Molecular assessment of commercial and laboratory stocks of Eisenia spp. (Oligochaeta: Lumbricidae) from South Africa
Fig. 2. Haplotype network calculated from the E. andrei COI haplotypes found in the South African earthworm groups investigated. The size of the circles is proportional to the number of earthworms sharing the same haplotype. The numbers on the branches indicate the positions of mutations on the COI sequences, mv1 represents a median vector (intermediate haplotypes, not found in this study).
Figure 5. Unrooted haplotype network. Each circle represents a in Distribution and molecular differentiation of Culex pipiens complex species in the Middle and Eastern Black Sea Regions of Turkey
Figure 5. Unrooted haplotype network. Each circle represents a haplotype, and the lines above each link indicate one mutation. Small black dots indicate intermediate, missing, or unsampled haplotypes.
Fig. 3. Haplotype networks for A. oahuensis. Panels correspond with the 12S in Tuerkayana latens Ng and Hsi-Te Shih 2023, n. sp.
Fig. 3. Haplotype networks for A. oahuensis. Panels correspond with the 12S rDNA gene (Panel A), 16S rDNA gene (Panel B), COI (Panel C), and H3A (Panel D). Colors and locality IDs correspond with those used in all other Figures. Black circles represent unsampled (i.e., missing) haplotypes, with the size of circles proportional to the frequency at which each haplotype was recovered.
ACE gene haplotypes and social networks: Using a biocultural framework to investigate blood pressure variation in African Americans
<p>This dataset contains all processed data used in analyses reported in the manuscript, ACE gene haplotypes and social networks: Using a biocultural framework to investigate blood pressure variation in African Americans. This project is part of a larger study focused on investigating the role of stress, discrimination, genetic variants, and other sociocultural factors in hypertension in African Americans.</p> <p> </p> <p> </p> <p>Variable Names and Descriptions:</p> <p>HHID: Participant Identification number</p> <p>sbp-10: Average of two Systolic Blood Pressure readings without 10 point correction for blood pressure medication (mmHg)</p> <p>sbp: Average of two Systolic Blood Pressure readings with 10 point correction for blood pressure medication (mmHg)</p> <p>dbp-5: Average of two Diastolic Blood Pressure readings without 5 point correction for blood pressure medication (mmHg)</p> <p>dbp: Average of two Diastolic Blood Pressure readings with 5 point correction for blood pressure medication (mmHg)</p> <p>ACE.Genotype: ACE genotype (0= Deletion/Deletion, 1= Insertion/Deletion, 2= Insertion/Insertion)</p> <p>WNK1.Genotype: WNK1 Genotype (0= Deletion/Deletion, 1= Insertion/Deletion, 2= Insertion/Insertion)</p> <p>age: age (years)</p> <p>sex: sex (Male =1, Female = 2)</p> <p>bpmedtake: Whether the participant uses blood pressure medication</p> <p>bmi: Body Mass Index (calculated from height and weight)</p> <p>ALTER GENDER|Answer:Male|Value:0|Count: Number of male alters (social network members)</p> <p>Alter Gender Male: Percentage of alters that are male</p> <p>ALTER GENDER|Answer:Female|Value:1|Count: Number of female alters (social network members)</p> <p>Alter Gender Female: Percentage of alters that are female</p> <p>Closeness_Mean: Average closeness centrality of the network</p> <p>Between_Mean: Average between-ness centrality of the network</p> <p>percentage of family in structural percentage: Percentage of central network positions occupied by family members</p> <p>relationship max close family: The most close (centrally) network member is a family member</p> <p>Average distance: Average distance of individuals in a network</p> <p>Hap B: ACE gene haplotypes</p> <p> </p>
Fig. 2. Statistical parsimony cladogram network representing relationships among the 45 haplotypes for a 615 in Genetic diversity of Halyomorpha halys (Hemiptera, Pentatomidae) in Korea and comparison with COI sequence datasets from East Asia, Europe, and North America
Fig. 2. Statistical parsimony cladogram network representing relationships among the 45 haplotypes for a 615 bp fragment of the COI gene of Halyomorpha halys. Each circle is labeled with haplotype number, and the size of each circle is proportional to the frequency of each haplotype [H3 (n = 353); H1 (n = 285); H22 (n = 43); H8 (n = 34); H33 (n = 23); H2 (n = 16); H32 (n = 8); H7, H9–H13, and H43 (n = 3); H6, H14, H34, H39, and H40 (n = 2); H4–H5, H12, H15–H21, H23, H30–H31, H35–H38, H41, H42, and H44–H51 (n = 1)]. Differing colors indicate countries in which samples were collected.
Fig. 2. Minimum spanning network for haemosporidian mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the YukonKuskokwim Delta, Alaska during 2006–2016 in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 2. Minimum spanning network for haemosporidian mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the YukonKuskokwim Delta, Alaska during 2006–2016. Circles are drawn proportional to the frequency at which haplotypes were detected. Shading represented the assignment of representative sequences for haplotypes to L. simondi clade A (teal), L. simondi clade B (orange), or other Leucocytozoon (grey) in phylogenetic analyses (see Results and Fig. 5). Lines are drawn proportional to genetic distance and are labeled per the number of mutations represented (except single nucleotide polymorphisms which are unlabeled). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 3. Haplotype network for E in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 3. Haplotype network for E. canadensis (G6/G7) using cox1 gene (616 bp) sequences of different countries. The E. canadensis (G6/G7) isolate obtained in this investigation (Hap_01) and the sequences identified as G7 in the Genbank database were utilized. Circle size relative to haplotype data set frequency. Each hatch mark is representative of one nucleotide change. Haplotypes formed by the isolates obtained in this study are marked with an asterisk.
Fig. 2. Haplotype network constructed using cox1 in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 2. Haplotype network constructed using cox1 (744 bp) gene sequences of T. hydatigena. Seven haplotypes formed by the T. hydatigena isolates obtained in this study: (Hap 1-Hap 7). Circle size relative to haplotype data set frequency. Each hatch mark is representative of one nucleotide change. Haplotypes formed by the isolates obtained in this study are marked with an asterisk.
Fig. 11 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 11. Haplotype network of Ngirhaphium sivasothii. Thailand: Krabi, Phangnga, Satun; Singapore: Sarimbun, Pulau Tekong, Pulau Ubin, Labrador, Semakau Island, and Sungei Buloh.
Fig. 10 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 10. Haplotype network of Ngirhaphium murphyi. Singapore: Pulau Ubin, Mandai Sungei Buloh; Thailand: Satun and Krabi.
Fig. 12 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 12. Compilation of male terminalia of Ngirhaphium in lateral view. A, Ngirhaphium sivasothii left side with ventral surstylus removed; cerci dorsally; B, Ngirhaphium murphyi left side with ventral surstylus removed; cerci and dorsal surstyli dorsally; C, Ngirhaphium caeruleum left side with ventral surstylus removed; cerci and dorsal surstyli dorsally; D, Ngirhaphium meieri, new species left side with ventral surstylus removed; E, Ngirhaphium chutamasae left side with ventral surstylus removed; F, Ngirhaphium thaicum, new species right side. Scale = 0.1 mm.
Fig. 8 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 8. Ngirhaphium meieri, new species, holotype male terminalia: A, Lateral view of genital capsule with left ventral surstylus removed; B, Cerci dorsally; C. Left ventral surstylus; D, Ventral view of genital capsule. Abbreviations: ae = aedeagus; c = cercus; ds = dorsal surstylus; hy = hypandrium; sp = sperm pump; vs = ventral surstylus. Scale = 0.1 mm.
Fig. 5 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 5. Ngirhaphium thaicum, new species male terminalia (27_009) A, epandrium left side; B, cerci dorsal view; C, left surstylus inside view. Scale = 0.1 mm.
Fig. 2 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 2. Ngirhaphium caeruleum-complex. View of inside of the dorsal surstylus of the left side and the fused dorsal and ventral surstyli of the right side. Scale = 0.1mm. A, green caeruleum from Tutong, Brunei (ZRCBDP0066395) at 1.6 % from the Semakau population; B, green caeruleum from Pulau Tekong, Singapore (ZRCBDP0001462) at 0.6% from the Semakau population; C, green caeruleum from Pulau Ubin, Singapore (ZRC_BDP_0084430) at 0.6% from the Semakau population; D, blue caeruleum from the type locality on Semakau Island, Singapore (ZRCBDP0118762); E, green thaicum, new species from Surat Thani, Thailand (24-018) at 4.2% from the Semakau population; F, green thaicum, new species from Cambodia (JP3C_Ngi-cambodiensis_Misc002) within the variability of the southern Thailand populations.
Fig. 1 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 1. Haplotype network of the Ngirhaphium caeruleum-complex. Brunei: Berambang, Tutong, Labu; Singapore: Pulau Ubin, Pulau Tekong, Semakau Island; Thailand: Chumphon, Surat Thani, and Cambodia.
Fig 4. Median-joining haplotype network for M in Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
Fig 4. Median-joining haplotype network for M. fascicularis. The size of the circular nodes representing haplotypes is proportional to the number of sequences comprising the haplotype. Shading of circular nodes corresponds to general geographic groupings including Sundaic islands (white), mainland Indochina (gray), Malay Peninsula and northern Sumatra (dark gray), and Singapore (black). Haplotype identifications are presented in Table 1.
FIGURE 3. Haplotype network inferred from A in On the taxonomic identity of Pteronotus davyi incae Smith, 1972 (Chiroptera: Mormoopidae)
FIGURE 3. Haplotype network inferred from A, cyt-b and B, CO1 datasets, highlighting the clusters corresponding to Pteronotus davyi, P. fulvus, and P. gymnonotus. Each circle represents one distinct haplotype (H), whose size is proportional to its frequency in the sample (1 to 6 individuals).
Figure 4. Statistical haplotype networks for COI, 16S in Old lake versus young taxa: a comparative phylogeographic perspective on the evolution of Caspian Sea gastropods (Neritidae: Theodoxus )
Figure 4. Statistical haplotype networks for COI, 16S and ATPα sequence data for Pontocaspian and southern Iranian Theodoxus groups. The total number of sequences in each network is demarcated by 'n'. The circle sizes represent the relative frequency of sequences per haplotype. The number of site changes separating haplotypes is indicated by blank dots. Colours correspond to the sampling locations, as indicated in the key and in figure 2. Haplotype groupings are boxed and labelled according to the phylogroups determined through the dated phylogeny (I–VI; figure 3).
Figure 4. Haplotype network for Rattus rattus Complex II in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 4. Haplotype network for Rattus rattus Complex II. The Nusa Tenggara samples are illustrated on the right of the network.
Figure 3. Haplotype networks for Rattus exulans, R in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 3. Haplotype networks for Rattus exulans, R. argentiventer, and Rattus rattus Complex LIV. Sunda refers to the islands of Borneo, Java, and Sumatra; the Indonesian sample (brown) lacks further collection information.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.