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5,626 results for “intensity”

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edi64/100

Spartina alterniflora above- and belowground biomass predictions and inundation intensity as estimated by the Belowground Ecosystem Resiliency Model for U.S. Georgia marshes from 2014 to 2023.

We applied the Belowground Ecosystem Resiliency Model (BERM) to estimate monthly aboveground biomass (AGB) and belowground biomass (BGB) in U.S. Georgia Spartina alterniflora marshes from 2014 to 2023 at 30 m scale. This application involved BERM version 2.0 (https://doi.org/10.5281/zenodo.13306821), which was built using data in the PLT-GCET-2308 dataset (https://dx.doi.org/10.6073/pasta/4a0b715104849d98320fcc34e7cd63a4). Data sources for BERM application included Landsat-8/9, NOAA CO-OPS Station ID: 8670870, Daymet, and USGS 3DEP 2018 DEM. Download and processing steps are described in the BERM code and in metadata methods section. Specific descriptions of data processing are available in model code: https://doi.org/10.5281/zenodo.13306821. Data provided here include model output of AGB estimates, BGB estimates, and calculated inundation intensity. See "Data reporting" method in the metadata for description of data files. For logisitical purposes here we present only select data from the model input and output. All model input data sources as listed in the abstract are publicly available. Model calibration data and code are published as well. Additional predictions not published here include foliar chlorophyll, foliar nitrogen, and leaf area index.

openCC (other)Dec 2024View details →
edi52/100

Hydrochemical Data from a Tropical Andean Glacierized Catchment: δ18O, electrical conductivity, maximum fluorescence intensity, and dissolved organic carbon concentrations from short-term sampling campaigns, Ecuador (2022 and 2024)

Fluorescent dissolved organic matter (FDOM) quality, dissolved organic carbon (DOC) concentration, electrical conductivity (EC), and stable water isotopes (δ¹⁸O and δ2H) were determined in water, snow, and ice samples from a tropical glacierized catchment in the Ecuadorian Andes. The sampling locations were selected to capture the major hydrologic inputs to the main stream channel (glacial melt, tributaries, wetlands, and groundwater springs) and constrain the in-stream spatiotemporal variation in DOM quality and other hydrochemical characteristics. Two sets of high-resolution time series were collected on Oct 13, 2022 and Jun 14, 2024. Time series samples were collected at various upper catchment locations and the outlet simultaneously. DOM quality was characterized via fluorescence spectroscopy and processed using parallel factor analysis (PARAFAC). The DOM quality data are expressed as %FMax values obtained through a 4-component PARAFAC model, where %Fmax 1– 4 are interpreted as terrestrial humic-like, tyrosine-like, tryptophan-like, and microbial humic-like fluorescent components, respectively. DOC concentrations were quantified using high-temperature catalytic combustion, stable water isotopes were analyzed using laser-based spectroscopy, and EC was measured in situ with handheld multiparameter water quality probes.

openCC0Jul 2025View details →
zenodo48/100

Derived Data supporting "On the Seasonal Cycles of Tropical Cyclone Potential Intensity" (Gilford et al. 2017, JoC)

<p>Derived monthly mean tropical cyclone potential intensities (and associated variables) using the Bister and Emanuel 2002 PI algorithm,&nbsp;ftp://texmex.mit.edu/pub/emanuel/TCMAX; from MERRA2 (averaged over 1980-2016) and ERA-I data&nbsp;(averaged over 1980-2013), on 2.5x2.5 degree grids and with the&nbsp;ERA-I land-sea mask already applied. This data supported the publication of Gilford et al. (2017, JoC). When using this data, please include the citation:</p> <p>Daniel M. Gilford, Susan Solomon, and Kerry Emanuel, 2017: On the Seasonal Cycles of Tropical Cyclone Potential Intensity.&nbsp;<em>J. Climate,&nbsp;</em><strong>30</strong>, 6085&ndash;6096. doi:&nbsp;<a href="http://journals.ametsoc.org/doi/10.1175/JCLI-D-16-0827.1">10.1175/JCLI-D-16-0827.1</a>.</p> <p>&nbsp;</p>

opencc-by-4.0Apr 2017View details →
zenodo48/100

Historical Tropical Cyclone Along-track Potential Intensity (and Derived Quantities) for Six Ocean Basins from Reanalyses

<p>Supporting derived data for Shields et al. (2020, GRL).</p> <p>Derived tropical cyclone potential intensities and associated variables across the North Atlantic (NA), Eastern North&nbsp;Pacific (EP), North Indian (NI), South Indian (SI), South Pacific (SP), and Western North Pacific (WP)&nbsp;ocean basins, from MERRA2, ERA-I, and MERRA2 with SSTs replaced by HadISSTs. NA/WP basins also have potential&nbsp;and observed intensities calculated with NCEP/NCAR and ERA-20C reanalyses over 1950-2016 and 1950-2010, respectively.</p> <p>All files are netcdf format, organized by basin, with&nbsp;suffixes on data variables to indicate reanalysis:</p> <ul> <li>&quot;_m&quot;: MERRA2 (Gelaro et al. 2017)</li> <li>&quot;_h&quot;: MERRA2-HadISSTs (Rayner et al. 2003)</li> <li>&quot;_e&quot;:&nbsp;ERA-I (Dee et al. 2011)</li> <li>&quot;_n&quot;: NCEP/NCAR (Kalnay et al. 2016)</li> <li>&quot;_c&quot;: ERA-20C (Stickler et al. 2014)</li> </ul> <p>When using this data, please include the citation:</p> <blockquote> <p><strong>Shannon Shields, Allison Wing, and Daniel M. Gilford, 2020: A Global Analysis of Interannual Variability of Potential and Actual Tropical Cyclone Intensities. Geophys. Res. Lett.</strong></p> </blockquote> <p>Potential intensities calculated with the Bister and Emanuel (2002) algorithm (<strong>pcmin.m</strong>) by Kerry Emanuel (revised by Daniel Gilford, Gilford et al. 2019), available freely at:&nbsp;ftp://texmex.mit.edu/pub/emanuel/TCMAX</p> <p>MERRA2, ERA-I, and MERRA2 with SSTs replaced by HadISSTs&nbsp;calculations were performed&nbsp;by Daniel Gilford; NCEP/NCAR and ERA-20C calculations were performed by&nbsp;Dr. Suzana Camargo&nbsp;(many thanks!).</p> <p>Please direct any questions or comments to daniel[dot]gilford[at]rutgers[dot]edu.</p>

opencc-by-4.0Jun 2020View details →
zenodo48/100

Raw band intensity values for ATG3 WT or Mutants in vitro LC3 lipidation

<p>Raw band intensity values used for the quantification of in vitro LC3 lipidation results (Fig4C) in Three-step docking by WIPI2, ATG16L1 and ATG3 delivers LC3 to the phagophore.</p>

opencc-by-4.0Nov 2023View details →
zenodo48/100

Live-cell STED dataset of mitochondria containing ground truth and corresponding low intensity noisy images

<p>The dataset was acquired as part of the manuscript "Denoising diffusion models for high-resolution microscopy image restoration". The dataset contains ground truth and low intensity STED images of mitochondria acquired in live U2-OS cells stably expressing TOM20 coupled to the dead mutant of HaloTag7 which was made fluorescent by using the exchangeable ligand Hy4 bound to the fluorophore SiR.&nbsp;</p>

opencc-by-4.0Nov 2024View details →
zenodo48/100

DATA SET: Peripheral microcirculatory alterations are associated with the severity of acute respiratory distress syndrome in COVID-19 patients admitted to intermediate respiratory and intensive care units

<p>This repository contains the data sets of the article:</p> <p>Mesquida, J., Caballer, A., Cortese, L.&nbsp;<em>et al.</em>&nbsp;Peripheral microcirculatory alterations are associated with the severity of acute respiratory distress syndrome in COVID-19 patients admitted to intermediate respiratory and intensive care units.&nbsp;<em>Crit Care</em>&nbsp;<strong>25,&nbsp;</strong>381 (2021). https://doi.org/10.1186/s13054-021-03803-2</p>

opencc-by-4.0Nov 2021View details →
zenodo48/100

Atlas of the Solar Intensity Spectrum and its Center-to-Limb Variation

<p>The atlas of the Third Solar Spectrum (SS3) represents the ratio between the intensity spectrum at different distances from the solar limb and the intensity spectrum at disk center (&micro; = 1.0), both in units of the intensity of the local continuum level.&nbsp; The observed positions of the measurements cover 9 different &micro; values along the solar axis ranging from 0.1 to 0.9 in step of 0.1, where&nbsp; &micro;=cos&theta; is the cosine&nbsp; of the heliocentric angle &theta;. The current version of the atlas covers the range 4384- 6610 &Aring;.</p> <p>In the PDF file, the first plot represents the spectrum at the center of the solar disk, recorded at IRSOL. The next 9 plots represent the 3rd solar spectrum for &micro;=0.1, &micro;=0.2, &micro;=0.3, &hellip;, &micro;=0.9</p> <p>Columns of the CSV file:</p> <table> <tbody> <tr> <td><strong>WL:</strong></td> <td>Wavelength, 4384-6610 &Aring;</td> </tr> <tr> <td><strong>IC:</strong></td> <td>I/I<sub>c</sub> at disc center</td> </tr> <tr> <td><strong>RMU01:</strong></td> <td>limb / disk-center ratio at &micro;=0.1</td> </tr> <tr> <td><strong>RMU02:</strong></td> <td>limb / disk-center ratio at &micro;=0.2</td> </tr> <tr> <td><strong>&hellip;</strong></td> <td>&hellip;</td> </tr> <tr> <td><strong>RMU09:</strong></td> <td>limb / disk-center ratio at &micro;=0.9</td> </tr> </tbody> </table>

opencc-by-4.0Aug 2017View details →
zenodo48/100

Data for "Modelling soil carbon stocks following reduced tillage intensity: a framework to estimate decomposition rate constant modifiers for RothC-26.3, demonstrated in north-west Europe"

<p>Dataset of paired observations of conventional tillage (CT) with no tillage (NT) and reduced tillage (RT) from studies in temperate oceanic regions of Western Europe, extracted from a recent systematic review (Jordon et al. preprint, see DOI below).</p> <p>R code of modelling framework to estimate tillage rate modifiers (TRM) for simulating adoption of RT and NT using RothC-26.3, and meta-estimates of TRM across studies.</p>

opencc-by-4.0Sep 2021View details →
zenodo48/100

Selected data(s) from : Five-dimensional optical data storage based on ellipse orientation and fluorescence intensity in a silver-sensitized commercial glass

<p>The data selected is based on the figures below, published in the linked article (see the doi).</p> <p>- <strong>Figure 1.</strong> (<strong>a</strong>) Femtosecond laser tight focusing in the silver-containing glass, leading to the production of fluorescent silver clusters at its periphery. (<strong>b</strong>) SLM holographic phase masks with an additional cylindrical profile leading to an elliptical pattern by DLW. (<strong>c</strong>) Oriented elliptical patterns obtained by SLM phase mask manipulation, corresponding to 2<sup>4</sup> = 16 orientation-encoded levels. <strong>(Only picture)</strong></p> <p>- <strong>Figure 2.</strong> Fabricated fluorescence calibration matrix. (<strong>a</strong>) Confocal image of all basic storage units composed by 16 intensity levels and 16 orientation levels. (<strong>b</strong>) Measured fluorescence intensity versus incident DLW intensity for the 5D decoding process. <strong>(Pictures, opj file, csv datas)</strong></p> <p><strong>- </strong> <strong>Figure 3.</strong> (<strong>a</strong>,<strong>b</strong>) are the encoded images of two Nobel laureates in 16 orientation levels and 16 intensity levels, respectively. (<strong>c</strong>) 100 &times; 100 entangled patterns among 16 &times; 16 intensity and orientation levels. (<strong>d</strong>) The fluorescence calibration matrix was fabricated for decoding (fluorescence excitation at 405 nm). <strong>(Pictures, cvs datas)</strong></p> <ol> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3_2020-10-21_V01 : Figure 3</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3a_2020-10-21_V01 : Original image oritentation</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3b_2020-10-21_V01 : Original image intensity</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3c_Figure3d_2020-10-21_V01 : DLW image</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3_datas_IICT4BF_2020-10-21_V01 : Intensity image converted to 4 bit format</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3_datas_OICT4BF_T2020-10-21_V01 : Orientation image converted to 4 bit format</li> <li>ANR_ ARCHIFLUO_ICMCB_Article_Micromachines_Figure3_datas_OICT4BFL_2020-10-21_V01 : Orientation image converted to 4 bit format level</li> </ol> <p><strong>- Figure 4.</strong> (<strong>a</strong>,<strong>b</strong>) Retrieved images from the initial images of Figure 3a,b, respectively. (<strong>c</strong>,<strong>d</strong>) Histograms of the level difference between original and decoded levels for the orientation direction and the fluorescence intensity, respectively. (<strong>Picture and csv datas</strong>)</p> <p>- <strong>Figure 5.</strong> (<strong>a</strong>) Confocal top-view image of one single elliptically-shaped storage unit fabricated by using type A DLW. (<strong>b</strong>) Fluorescence intensity profile along the horizontal and vertical cross section at focal plane. (<strong>c</strong>) Fluorescence intensity profile and Gaussian fitting along the z-axis (depth). (<strong>Picture, opj file, csv datas</strong>)</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0May 2022View details →
zenodo48/100

Supporting Data for the paper titled "The Intensity, Directionality and Statistics of Underwater Noise from Melting Icebergs"

<p>The dataset contains:</p> <p>a) 13 audio files, with names including date, track number and channel; format: WAV files</p> <p>b) data from magnetic compass used to calculate noise directionality; format: txt files with lines containing date, time and magnetic direction (degrees)</p> <p>c) GPS tracks of the boat and attached acoustic buoy; format: txt files with NMEA codes</p> <p>d) GPS tracks around each iceberg tracked; format: txt files with UTM coordinates</p> <p>The study was founded by National Science Centre Poland grant no. 2013/11/N/ST10/01729 and partially supported within statutory activities No 3841/E-41/S/2018 of the Ministry of Science and Higher Education of Poland. Partial support for this work was also provided by US Office of Naval Research, Grant No. N00014-17-1-2633.</p> <p>Corresponding author: Oskar Glowacki, oglowacki@igf.edu.pl</p>

opencc-by-4.0Mar 2018View details →
zenodo48/100

FTICR MS data for standards and mixtures for quantitative peak intensity investigation

<p>This upload contains raw (Bruker .d format) FTICR mass spectrometry data (direct infusion, negative mode ESI) for standards in different mixtures and matrices for the purposes of investigating the (non)quantitative nature of the data.&nbsp;<br>Processed data (Excel format), and Python scripts used for data processing are also included.&nbsp;</p> <p>Note - the Python scripts used CoreMS version prior to V2.0 for analysis - to re-run these scripts with a more recent release likely requires syntax updates.&nbsp;</p>

opencc-by-4.0Oct 2024View details →
zenodo48/100

EURO-CORDEX Precipitation Intensity-Duration-Frequency Curves

<p>This dataset provides preliminary precipitation intensity-duration-frequency (IDF) values calculated from the <a href="https://cds.climate.copernicus.eu/datasets/projections-cordex-domains-single-levels">CMIP5 based EURO-CORDEX regional climate model simulations</a>. Values for the cities of Logro&ntilde;o, Spain; Gdynia, Poland; Milan Italy; and Athens Greece are provided for a historical and future period for the RCP 2.6, 4.5 and RCP 8.5 atmospheric greenhouse gas concentration scenarios for a total of 123 simulations.</p> <p>Technical Info</p> <p>The return period values are computed for exceedance periods of 2, 5, 10, 25, 50, 100, 200, and 500-years and durations of 3, 6, 12, and 24-hours using the generalized extreme value (GEV) distribution with the&nbsp;<a href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.genextreme.html">scipy.stats.genextreme&nbsp;</a>function from the Python SciPy library. Computations are performed from the output of a combination of 123 regional climate models (RCMs), global climate models (GCMs), climate change scenarios, and ensemble members. The historical data cover the period 1976 through 2005 and the future 2041 through 2070 for the RCP 2.6, 4.5 and 8.5 atmospheric greenhouse gas concentration scenarios. Included in the analysis, there are 39 unique RCM-GCM combinations with outputs from 48 historical, 15 RCP 2.6, 13 RCP 4.5, and 47 RCP 8.5 simulations.</p> <p>Data description: This dataset contains EURO CORDEX return period estimates computed for exceedance periods of 2-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-years and 3-, 6-, 12-, and 24-hour durations using the generalized extreme value (GEV) distribution. The data includes values based on outputs from a total of 123 simulation combinations, including 39 RCM&ndash;GCM configurations, three climate change scenario combinations for a historical period (1976-2005) and future period (2041-2070), and three ensemble members.</p> <p>Format:</p> <p>The format of this dataset is organized in one ZIP files: IDF_{Cityname}.zip. The zip file contains 48 csv files for each RCM-GCM combination and ensemble member that include IDFs for each available RCP scenario.</p>

opencc-by-4.0Nov 2024View details →
edi48/100

MCR LTER: Coral Reef Resilience: Algae, Coral, and Sediment data from Grazing Intensity Experiment, 2010 - 2012

These data describe the percent cover of benthic space holders (primarily algae), the biomass of algae and sediment, and the number of corals recruiting on 15 cm X 15 cm terra cota tiles experimentally manipulated on the forereef on the north shore of Moorea. The experiment was established to test whether and how different levels of grazing influence benthic community development. Five treatments were initially established to create a gradient in grazing pressure with a sixth treatment established shortly thereafter. Each treatment was replicated ten times using a randomized block design. Each cage initially contained four tiles, and one tile from each cage has been photographed and destructively sampled for biomass at regular intervals. In addition to the original tiles deployed in July 2010, tiles were subsequently deployed in March 2011, August 2011, and March 2012 to test whether community development varies among seasons. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2018). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.

openCC (other)May 2012View details →
zenodo44/100

Dataset for the Intensity Ratio Nuclei Cytoplasm Tool

<p>Pairs of fluorescently stained images of nuclei and cytoplasm. Example input data for the Intensity Ratio Nuclei Cytoplasm Tool.</p>

opencc-by-4.0Sep 2020View details →
zenodo44/100

An intense, cold, velocity-controlled molecular beam by frequency-chirped laser slowing - supporting data

<p>These are the data presented in figures 3, 4, 5, 6 and 7 of our paper "An intense, cold, velocity-controlled molecular beam by frequency-chirped laser slowing". The first line of each data file explains the content. The second line labels the columns. The remaining rows give the data.</p>

opencc-by-4.0Jan 2017View details →
zenodo44/100

[Dataset] Plant–pollinator in a highly intensive agricultural landscape LTSER Zone Atelier Plaine & Val de Sèvre

<p>We built&nbsp;bipartite networks formed by pollinators and the flowers they forage on, using data collected in the Long Term Socio-Ecological Research site "Zone Atelier Plaine &amp; Val de S&egrave;vre" (Bretagnolle et al. 2028). We compiled a six-year monitoring dataset of plant&ndash;pollinator interactions, sampling by sweep-nets along transects in the main crop types of this intensive agricultural plain.&nbsp;</p> <p>The dataset contained all the "pollinator-plant" pair observed in each crop samples.</p>

opencc-by-4.0Feb 2024View details →
zenodo44/100

Measurement of energies and intensities of multiple ionization satellite (MIS) excited in light elements by helium ion beams

<p>TNA project number: <strong>19001708-ST</strong></p> <p><strong>Measurement of energies and intensities of multiple ionization satellite (MIS) excited in light elements by helium ion beams</strong></p> <p><em>Scientific background:</em></p> <p>Over 1600 X-ray spectra have been collected from the alpha particle X-ray spectrometers on Mars rovers including the present Curiosity rover. The spectra are excited by the radionuclide <sup>244</sup>Cm, which emits 5 MeV He ions for PIXE and Pu L X-rays for XRF. These spectra provide elemental analysis of rocks, soils and dust as part of the quest to identify formerly habitable (water-bearing) environments. Applicant is a member of the Curiosity APXS team within NASA&rsquo;s Mars Science Laboratory. Excitation of K X-rays by 5 MeV He ions produces also energy-shifted satellites due to 1, 2 or 3 L-shell spectator vacancies. These cause significant distortion of the diagram lines and worsen the quality of spectrum fits by the GUPIX(Mars) code. An MIS database is needed to support a correction procedure that is already devised. This work will increase analytical accuracy and will also support more accurate terrestrial PIXE analysis using alpha beams, especially when partnered with RBS; this could lead to increased use of these two IBA methods in a complementary manner.</p> <p>&nbsp;</p> <p><em>Measurements performed within TNA project:</em></p> <p>The wavelength-dispersive in-vacuum x-ray spectrometer of J. Stefan Institute (Ljubljana, Slovenia) [1] have been used to record high energy resolution KaL<sup>N</sup> X-ray spectra of Ca and Cr induced in collisions with MeV alpha particles. The targets used were metallic Cr, Cr<sub>2</sub>O<sub>3</sub>, and CaF<sub>2</sub>. The KaL<sup>N</sup> X-ray spectra of Cr and Cr<sub>2</sub>O<sub>3</sub> were measured using three different energies of He ions, namely 3 MeV, 4 MeV and 5 MeV. For CaF<sub>2</sub> we have collected only spectra induced with 5 MeV He beam. The main purpose of the experiment was to record KaL<sup>N</sup> spectra with good enough statistics to determine precisely energy/intensity of the corresponding satellite lines. The results for the energy shifts and relative intensities of the groups will be incorporated in the MIS database providing an empirical means for inclusion of one peak per satellite group when modelling energy-dispersive spectra (GUPIX(Mars) code).</p> <p>[1] M. Kavčič, M. Budnar, A. M&uuml;hleisen, F. Gasser, M. Žitnik, K. Bučar, R. Bohinc, <em>Design and performance of a versatile curved-crystal spectrometer for high-resolution spectroscopy in the tender x-ray range</em>, Rev. Sci. Instr. 83, 033113 (2012). <a href="http://dx.doi.org/10.1063/1.3697862">http://dx.doi.org/10.1063/1.3697862</a></p> <p>&nbsp;</p> <p><em>Data files:</em></p> <p>We are sharing the detector files (a series of single exposure 2D raw images) collected by the Andor DX438-BV CCD camera (770 &times; 1152 pixels with pixel size 22.5&times;22.5 <em>&mu;</em>m<sup>2</sup>) after the diffraction on the crystal analyzer. The horizontal axis of the detector corresponds to the dispersion axis and diffracted photons are detected at different horizontal positions according to their wavelength, the vertical axis of the detector serves mainly to accumulate more statistics. The final emission spectra are obtained from the corresponding detector files using the home-written data processing software.</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jan 2022View details →
zenodo44/100

Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities

<p>Simulation output files for &#39;Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities&#39;.</p> <p>Simulating COVID-19 transmission and hospital burden to assess at which intensive care unit (ICU) occupancies mitigation, that reduces transmission, needs to be triggered to avoid exceeding ICU capacity limits, using the city of Chicago, Illinois as an example.</p> <p>Manuscript is under review for scientific publication, (see&nbsp;<a href="https://www.medrxiv.org/content/10.1101/2021.06.27.21259530v1">preprint on medRxiv</a>) and scripts are available from the&nbsp;GitHub repository at&nbsp;https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021.&nbsp;</p> <p>Simulation output files uploaded per scenario including projected COVIID-19 transmission and burden trajectories for Chicago city for March 2020 to May 2021 per day.</p> <p>Simulation scenarios:</p> <p>&lt;reopening % above ICU capacity&gt;_&lt;delay after reaching ICU threshold&gt;_&lt;%mitigation&gt;_&lt;common simulation name&gt;&nbsp; i.e. `50perc_1daysdelay_pr6_triggeredrollback_reopen`</p> <ul> <li>`emodl` file <ul> <li>required file for COVID-19 transmission model in the <a href="https://docs.idmod.org/projects/cms/en/latest/index.html">Compartmental Modeling Software</a> (see <a href="https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021">GitHub repository</a> for details)</li> </ul> </li> <li>sampled_parameters.csv <ul> <li>simulation input and scenario parameters, (nrow=4400, 400 unique parameter combinations * 11 scenario values)</li> </ul> </li> <li>rt_trajectoriescovidregion_11.csv <ul> <li>estimated reproductive numbers per trajectory for complete timeline per day</li> </ul> </li> <li>trajectoriesDat_region_11_traces.csv <ul> <li>filtered to include top 100 trajectories fitted to ICU data</li> </ul> </li> <li>trajectoriesDat_region_trimfut.csv <ul> <li>truncated to only include projections after September 1st 2020</li> </ul> </li> </ul> <p>The folder `mainfigures_csvs.zip` includes processed simulation output data for the publication figures.</p>

opencc-by-4.0Jun 2021View details →
zenodo44/100

Language intensity scale

<p>This is an index comprised by 3 subindexs and a global index (which is the result of a combination of the other three). These are:<br> LC Index: Linguistic Competences<br> CA Index: Communication Skills<br> IA Index: Information-processing Abilities<br> ILT/LIO Index: Linguistic Intensity of Occupations<br> To elaborate the different indexes, the information contained in the O*Net database (corresponding to the USA of the year 2015) has been used, from which those variables (taken as items) directly related to each one have been considered of the first three indices (CL, HTI, HSC) considered as reflective constructs. In contrast, the ILT index has been constructed as a second order construct, of a formative nature, based on the factorial scores of the first three indices. For the validation of the measurement scales and the obtaining of the factorial scores of the different indexes, a statistical model of structural equations has been used, specifically based on the technique of the variances (PLS). The factorial scores obtained for each dimension, both first order (CL, HTI, HSC) and second order (ILT), have been transformed into a range of variation in the 0-100 range, to obtain the values For each occupation of the different indexes.</p>

opencc-by-4.0Jan 2021View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record