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13 results for “iron toxicity”
Code for manuscript "Organic ligands in whale excrement support iron availability and reduce copper toxicity to the surface ocean" by Monreal et al.
<p>.zip file containing GitHub repository titled "ligands-in-whale-excrement" (<a href="https://github.com/patrickmon38/ligands-in-whale-excrement/tree/main">https://github.com/patrickmon38/ligands-in-whale-excrement/tree/main</a>)<br><br><strong>README from GitHub: </strong></p> <div> <h3>Code used to generate figures for the manuscript "Organic ligands in whale excrement support iron availability and reduce copper toxicity to the surface ocean" by Monreal et al. are found in this repository.</h3> </div> <div> <p>In press at Communications Earth & Environment</p> <p> </p> </div> <p>Most data (all except .mzXML data) called in code is from Github_Data_For_Whale_Ligand_Manuscript.xlsx in this repository.</p> <p> </p> <p>Mass spec data from .mzXML files are has been depositied and is available for download in the Mass Spectrometry Interactive Virtual Environment (MassIVE). LC-ESI-MS (Orbitrap) and LC-FT-ICR-MS raw data can be accessed there under MSV000094994 (doi:10.25345/C50000B5D) and MSV000094995 (doi:10.25345/C5V98034P), respectively.</p> <p> </p> <p>html output from Rmarkdown file can be viewed directly at <a href="https://html-preview.github.io/?url=https://github.com/patrickmon38/ligands-in-whale-excrement/blob/main/Figures_for_GitHub_Whale_Excrement_Manuscript.html" rel="nofollow">https://html-preview.github.io/?url=https://github.com/patrickmon38/ligands-in-whale-excrement/blob/main/Figures_for_GitHub_Whale_Excrement_Manuscript.html</a>.</p> <p>If trying to run Rmarkdown on your own system, you will need to download the .xlsx and .mzXML files and change paths accordingly.</p> <p>Co-authors of this manuscript:</p> <h5>Patrick J. Monreal (University of Washington)</h5> <h5>Matthew S. Savoca (Stanford University)</h5> <h5>Lydia Babcock-Adams (National High Magnetic Field Laboratory)</h5> <h5>Laura E. Moore (University of Washington)</h5> <h5>Angel Ruacho (Univesrity of Washington)</h5> <h5>Dylan Hull (University of Washington)</h5> <h5>Logan J. Pallin (Unversity of California, Santa Cruz)</h5> <h5>Ross C. Nichols (Unversity of California, Santa Cruz)</h5> <h5>John Calambokidis (Cascadia Research Collective)</h5> <h5>Joseph A. Resing (Unviersity of Washington/CICOES/NOAA)</h5> <h5>Ari S. Friedlaender (Unversity of California, Santa Cruz)</h5> <h5>Jeremy Goldbogen (Stanford University)</h5> <h5>Randelle M. Bundy (University of Washington)</h5> <p> </p> <div> </div> <div><strong>If there are issues or questions with the code, author for contact is Patrick Monreal (<a href="mailto:pmonreal@uw.edu">pmonreal@uw.edu</a>).</strong></div>
Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.)
<p>This vcf file constitute underlying raw data material for the manuscript "Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (Oryza sativa L.)". <br> The SNP genotype data came from a whole-genome resequencing and were called using the Nipponbare IRGSP 1.0 rice reference genome. SNPs with a miss rate greater than 30% and minor allele frequency (MAF) less than 5% were removed. Heterozygous alleles were also excluded. Finally, 160,498 SNPs were selected and used in the GWAS analysis. </p>
Figure 1 in Bio-efficacy of iron and zinc fortified wheat flour along with bio-assessment of its hepatic and renal toxic potential
Figure 1. Microscopic morphology of representative liver tissues under the effect of varied iron and zinc supplementation in fortified wheat flour (100X; magnification). (A) Normal, no tissue changes = 0, (B) cellular swelling in hepatocytes = 1, (C) microvascular changes in hepatocytes = 2, (D) marked cellular swelling and necrosis of hepatocytes = 3.
Carbonate chemistry changes following iron and steel slags dissolution in seawater for Ocean Alkalinity Enhancement, and measured dissolution of potentially toxic elements.
<p>Ocean alkalinity enhancement is a carbon capture strategy that has gained interest over the past years. This strategy relies on the dissolution of alkaline minerals to increase the alkalinity of the ocean, among which iron and steel slags are potential candidates. However, their dissolution in seawater as well as the leaching of potentially toxic elements is unknown. These data were collected as part of a research article that assess the alkalinity generation potential of iron and steel slags in MilliQ and seawater, as well as the dissolution of potentially toxic elements. The dataset is composed of various sheets, each of them reporting data from a specific experiment. For each experiment, the analysis details (instrument used, parameters analysed etc) are provided on each individual sheet, and an overview one regroups the main aims of this research as well as the technical terms used throughout.</p>
Brain Iron Toxicity and Neurodegeneration - A 7T MRI Study
ClinicalTrials.gov study NCT04992975. IPD Sharing: NO. Countries: 1. Publications: 1.
Safety of Various Mode of Delivery of Iron Supplement on Iron Toxicity Markers in Preschool Children
ClinicalTrials.gov study NCT00980421. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Figure 2 in Bio-efficacy of iron and zinc fortified wheat flour along with bio-assessment of its hepatic and renal toxic potential
Figure 2. Microscopic morphology of representative kidney tissues under the effect of varied iron and zinc supplementation in fortified wheat flour (100X; magnification). (A) Normal, no tissue changes seen = 0, (B) peritubular congestion is seen=1.
Chemical potentiator of copper-accumulation and -toxicity: Probing iron- regulons of Saccharomyces cerevisiae
GEO Series GSE54045. Saccharomyces cerevisiae. 18 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic study of the impact of iron toxicity on rice plant
GEO Series GSE36299. Oryza sativa. 8 samples. Type: Expression profiling by array.
Non Interventional Study on Iron Toxicity After First Allo-transplant in MDS/CMML
ClinicalTrials.gov study NCT06267898. IPD Sharing: Not stated. Countries: 3. Publications: 0.
A small molecule inhibitor of iron-sulfur cluster assembly is toxic to Staphylococcus aureus in an Sae-dependent manner
GEO Series GSE85379. Staphylococcus aureus. 8 samples. Type: Expression profiling by array.
Transcriptomic analysis of Streptococcus suis in response to ferrous iron and cobalt toxicity
GEO Series GSE153766. Streptococcus suis. 9 samples. Type: Expression profiling by high throughput sequencing.
Introgression of genes and mechanisms conferring tolerance to iron toxicity from wild rice species Oryza meridionalis into domesticated rice Oryza sativa
GEO Series GSE151559. Oryza sativa Japonica Group; Oryza meridionalis; Oryza sativa Japonica Group x Oryza meridionalis. 18 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.