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308 results for “local responsibility”
Mangrove leaf physiological response to local climate at Key Largo, Watson River Chickee, Taylor Slough, and Little Rabbit Key, South Florida (FCE) from July 2001 to August 2001
Determine the red mangrove leaf physiological response to the local climate to understand the local controls on plant physiology. Data were collected in the Key Largo Ranger Station, Watson River Chickee and Taylor Slough research Sites, South Florida.
Locally adaptive temperature response of vegetative growth in Arabidopsis thaliana
<p>We investigated early vegetative growth of natural <em>Arabidopsis thaliana</em> accessions in cold, non-freezing temperatures, similar to temperatures these plants naturally encounter in fall at northern latitudes.</p> <p>Dataset includes:<br> - rosette area measurements over 3 weeks in a 16ºC and a 6ºC treatment. First phenoptying time point is at 14 days after stratification. Measurements were take twice per day.<br> These data are in file <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/rawdata_combined_annotation.txt?versionId=7b707f81-723f-4059-b72b-9dfb9f5ddd2e">rawdata_combined_annotation.txt</a> and go together with <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/outliers.csv?versionId=7287c919-1ed1-4b65-8e25-a75bb312c8fa">outliers.csv</a>, which contains outlying datapoints.</p> <p>- Seed Size measurements.<br> These data are in file <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/seed_size_swedes_lab_updated.csv?versionId=fb739477-862b-45cb-8074-7a1d8e1650bb">seed_size_swedes_lab_updated.csv </a><br> </p> <p>The remainnig files are required to rerun the analyses and recreate figures.<br> Scripts to do so can be found in https://github.com/picla/growth_16C_6C/</p> <p><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/1001genomes-accessions.csv?versionId=ee605038-bd9e-448f-9c96-1a8e980c1755">1001genomes-accessions.csv</a>: lists all accession from the 1001genomes project and their respective subpopulations.</p> <p><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/2029_modified_MN_SH_wc2.0_30s_bilinear.csv?versionId=73c6c2bf-97bd-425f-bf7e-14b5a7cb162f">2029_modified_MN_SH_wc2.0_30s_bilinear.csv</a>: contains climate data for each accession, downloaded and prcocessed from www.worldclim.org</p> <p><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/metabolic_distance.csv?versionId=8456f998-d0dc-4a80-b96f-c0c66c1c9731">metabolic_distance.csv</a>: contains the metabolic distance as calculated in Weiszmann et al. (https://www.biorxiv.org/content/10.1101/2020.09.24.311092v1)</p> <p><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/RNAseq_samples.txt?versionId=6ae1518b-1a70-440d-b0bd-0ccdcb66665e">RNAseq_samples.txt</a>: sample description of the RNA-seq samples (data is downloadable from <a href="http://www.ncbi.nlm.nih.gov/bioproject/807069">http://www.ncbi.nlm.nih.gov/bioproject/807069)</a></p> <p><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/ZAT12_downregulated_table10.csv?versionId=c6f7aa54-cb07-4378-a5a0-de12c6979b9b">ZAT12_downregulated_table10.csv</a>, <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/ZAT12_upregulated_table9.csv?versionId=911a2aa2-f08f-4a20-85de-cfa7c58b73a8">ZAT12_upregulated_table9.csv</a>, <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/CBF_regulon_DOWN_ParkEtAl2015.txt">CBF_regulon_DOWN_ParkEtAl2015.txt</a>, <a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/CBF_regulon_UP_ParkEtAl2015.txt?versionId=f7cacbda-eea6-4ac9-8f71-5ba74e3a67c4">CBF_regulon_UP_ParkEtAl2015.txt, </a><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/CBF2_downregulated_table8.csv">CBF2_downregulated_table8.csv, </a><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/CBF2_upregulated_table7.csv">CBF2_upregulated_table7.csv, </a><a href="https://zenodo.org/api/files/54fc7139-99a8-4e7f-af87-d6754031f5d9/HSFC1_regulon_ParkEtAl2015.txt">HSFC1_regulon_ParkEtAl2015.txt</a>: these files list genes that are involve din cold acclimation as described by Park et al. (https://onlinelibrary.wiley.com/doi/10.1111/tpj.12796), and Vogel et al.(https://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2004.02288.x).</p> <p><strong>Material and Methods</strong></p> <p><em><strong>Rosette growth</strong></em></p> <p>Seeds of 249 natural accessions (Suppl. Data 1) of <em>Arabidopsis thaliana</em> described in the 1001 genomes project <a href="https://paperpile.com/c/UDgV3V/DUBI">(1001 Genomes Consortium 2016)</a> were sown on sieved (6 mm) substrate (Einheitserde ED63). Pots were filled with 71.5 g ±1.5 g of soil to assure homogenous packing. The prepared pots were all covered with blue mats <a href="https://paperpile.com/c/UDgV3V/1WUv">(Junker et al. 2014)</a> to enable a robust performance of the high-throughput image analysis algorithm. Seeds were stratified (4 days at 4ºC in darkness) after which they germinated and left to grow for 2 weeks at 21ºC (relative humidity: 55 %; light intensity: 160 µmol m-2 s-1; 14 h light). The temperature treatments were started by transferring the seedlings to either 6 °C or 16 °C. To simulate natural conditions temperatures fluctuated diurnally between 16-21 °C, 0.5-6 °C and 8-16 °C for the 21 °C initial growth conditions and the 6 °C and 16 °C treatments, respectively (<a href="https://docs.google.com/document/d/1Bmr7p24ZMh4yPFVV5oPeH2-T5S41TOFDS3au8JhtwsU/edit#fig_design">Fig.2</a>). Light intensity was kept constant at 160 µmol m-2 s-1 throughout the experiment. Relative humidity was set at 55% but in colder temperatures it rose uncontrollably to maximum 95%. Daylength was 9h during the 16°C and 6°C treatments.</p> <p>Each temperature treatment was repeated in three independent experiments. Five replicate plants were grown for every genotype per experiment. Plants were randomly distributed across the growth chamber with an independent randomisation pattern for each experiment. During the temperature treatments (14 DAS – 35 DAS), plants were photographed twice a day (1 hour. after/before lights switched on/off), using an RGB camera (IDS uEye UI-548xRE-C; 5MP) mounted to a robotic arm. At 35 DAS, whole rosettes were harvested, immediately frozen in liquid nitrogen and stored at -80 °C until further analysis. Rosette areas were extracted from the plant images using Lemnatec OS (LemnaTec GmbH, Aachen, Germany) software.</p> <p><em><strong>Seed size</strong></em></p> <p>We used the seeds produced by <a href="https://paperpile.com/c/UDgV3V/Jqsd">(Kerdaffrec et al. 2016)</a> and limited our measurements to the set of 123 Swedish accessions that overlapped with our growth dataset. After seed stratification for four days at 4ºC in darkness, mother plants were grown for 8 weeks at 4ºC under long-day conditions (16h light; 8h dark) to ensure proper vernalization. Temperature was raised to 21ºC (light) and 16ºC (dark) for flowering and seed ripening. Seeds were kept in darkness at 16ºC and 30% relative humidity, from the harvest until seed size measurements. For each genotype three replicates were pooled and about 200-300 seeds were sprinkled on 12 x 12 cm square, transparent Petri dishes. Image acquisition was performed as described in <a href="https://paperpile.com/c/UDgV3V/WH1e">(Exposito-Alonso et al. 2018)</a> by scanning dishes on a cluster of eight Epson V600 scanners. The resulting 1200 dpi .tiff images were analyzed in the Fiji software. Images were converted to 8-bit binary images and thresholded with the <em>setAutoThreshold("Defaultdark”) </em>command, and seed area was measured in squared mm by running the <em>Analyse Particles</em> command (inclusion parameters: size=0.04-0.25 circularity=0.70-1.00).</p> <p> </p> <p> </p> <p> </p> <p> </p>
Spectral response of disorder-free localized lattice gauge theories
<p>Raw data for all figures in the manuscript "Spectral response of disorder-free localized lattice gauge theories"</p>
A New Method for Accurate and Efficient Modeling of the Local Ocean Induction Effects. Application to Long-Period Responses from Island Geomagnetic Observatories
<p>Dataset presented in Figures 3-7, S1 and S3 in the recently submitted AGU paper "A New Method for Accurate and Efficient Modeling of the Local Ocean Induction Effects. Application to Long-Period Responses from Island Geomagnetic Observatories".</p>
Code and Data for: "Signs of local adaptation and phenotypic plastic response to elevation shifted between environmental backgrounds in Snapdragon plants"
<p>Code and data for manuscript: "Signs of local adaptation and phenotypic plastic response to elevation shifted between environmental backgrounds in Snapdragon plants"</p>
Data from: Seasonal bee communities vary in their responses to resources at local and landscape scales: Implication for land managers
<p><strong>Context</strong>:<em> </em>There is great interest in land management practices for pollinators; however, a quantitative comparison of landscape and local effects on bee communities is necessary to determine if adding small habitat patches can increase bee abundance or species richness. The value of increasing floral abundance at a site is undoubtedly influenced by the phenology and magnitude of floral resources in the landscape, but due to the complexity of measuring landscape-scale resources, these factors have been understudied.</p> <p><strong>Objectives</strong>: To address this knowledge gap, we quantified the relative importance of local versus landscape scale resources for bee communities, identified the most important metrics of local and landscape quality, and evaluated how these relationships vary with season.</p> <p><strong>Methods</strong>: We studied season-specific relationships between local and landscape quality and wild-bee communities at 33 sites in the Finger Lakes region of New York, USA. We paired site surveys of wild bees, plants, and soil characteristics with a multi-dimensional assessment of landscape composition, configuration, insecticide toxic load, and a spatio-temporal evaluation of floral resources at local and landscape scales.</p> <p><strong>Results</strong>:<em> </em>We found that the most relevant spatial scale and landscape factor varied by season. Early-season bee communities responded primarily to landscape resources, including the presence of flowering trees and wetland habitats. In contrast, mid to late-season bee communities were more influenced by local conditions, though bee diversity was negatively impacted when sites were embedded in highly agricultural landscapes. Soil composition had complex impacts on bee communities, and likely reflects effects on plant community flowering. </p> <p><strong>Conclusions</strong>:<em> </em>Early-season bees can be supported by adding flowering trees and wetlands, while mid to late-season bees can be supported by local addition of summer and fall flowering plants. Sites embedded in landscapes with a greater proportion of natural areas will host a greater bee species diversity.</p>
Supplementary material 1 from: Pontoppidan M, Nachman G (2013) Changes in behavioural responses to infrastructure affect local and regional connectivity – a simulation study on pond breeding amphibians. Nature Conservation 5: 13-28. https://doi.org/10.3897/natureconservation.5.4611
Full model description following the ODD-template suggested by Grimm et al. (2006, 2010) and model parameterisation. (doi: 10.3897/natureconservation.5.4611.app). File format: Adobe PDF document (pdf).:
Data from: Local environment and coral composition affect recovery and determine long-term coral responses to recurrent mass mortalities in the Lakshadweep Archipelago
<p>A quarter century after the first global coral bleaching event in 1998, reports differ on the relative importance of anthropogenic influences, local environment and bleaching recurrence in determining the resilience of coral reefs. While life history traits largely determine how corals respond to temperature anomalies, it is unclear if these traits also determine how corals fare over time. From 1998 to 2022, we tracked compositional changes in reefs across the Lakshadweep Archipelago to explore how global El Niño events, and local environment (wave climate and depth) influenced coral responses to repeated mass bleaching. From the 1998 to the 2016 bleaching event, the magnitude of coral mortality reduced overall, particularly at deeper reefs (shallow: -38% to -3%; deep: -18% to -0.45%). Post-bleaching recovery correlated positively with higher wave exposure, linked to the creation of stable structures for coral settlement and survival. Across bleaching phases, recovery was initially slow (6-7 years post-mortality), but, given time, showed a much steeper increase, led by space-occupying genera like <em>Acropora</em>. However, recurring mass bleaching maintained coral cover low (~15% across all sites). These broad trends mask dynamic compositional patterns. Genera such as <em>Porites</em>, <em>Pocillopora</em>, and <em>Favia</em> declined less through time compared to <em>Acanthastrea</em>, <em>Turbinaria</em>, <em>Psammocora</em> and <em>Plesiastrea </em>among others. We identified six community clusters that describe contrasting long-term responses to local and global factors, mediated by depth and wave exposure. Interestingly, genera with different functional traits cluster together indicating that bleaching susceptibility interacts with depth and exposure, creating a spatial mosaic of coral assemblages. These clusters serve as a predictive, site-specific framework to understand the dynamically shifting but declining assemblage of Lakshadweep reefs. While local management could help maintain this changing composition, urgent global action is needed to secure the long-term ecological integrity of tropical reefs.</p>
FIGURE 4 in Fish functional responses to local habitat variation in streams within multiple land uses areas in the Amazon
FIGURE 4 | Relationships between the ecomorphological traits of fish species and environmental variables (land use and local habitat) in the streams evaluated in this study. Traits are represented by labels: relative head length (RHL), relative mouth width (RMW), relative height (RH), relative area of pectoral fin (RAPF) and relative caudal peduncle length (RCPL).
FIGURE 3 in Fish functional responses to local habitat variation in streams within multiple land uses areas in the Amazon
FIGURE 3 | Relationships between fish functional trophic groups and environmental variables (land use and local habitat) in the streams evaluated in this study. The groups are represented by the labels: Diurnal channel drift feeders (FTG 3), Diurnal backwater drift feeders (FTG 4), Diurnal surface pickers (FTG 7), Diggers (FTG 9) and Ambush and stalking predators (FTG 11). The FTG's with a correlation between 0.2 and -0.2 have been omitted for better visualization of the results.
FIGURE 2 in Fish functional responses to local habitat variation in streams within multiple land uses areas in the Amazon
FIGURE 2 | Ordination of the types of land use in the catchment areas of the study streams at the Capim River basin, eastern Amazon.
FIGURE 1 in Fish functional responses to local habitat variation in streams within multiple land uses areas in the Amazon
FIGURE 1 | Location of sampling streams (Middle Capim River basin, Pará State, Brazil). The characteristics of each land use class are described in the Material and Methods section.
Local response and emerging nonlinear elastic length scale in biopolymer matrices
<p>Dataset corresponding to the underlying numerical and experimental data of the research article "Local response and emerging nonlinear elastic length scale in biopolymer matrices". </p> <p>This repository contains four categories of data, each contained in a folder: <br> - Fiber Network Simulations <br> - Finite Elements Simulations <br> - Optical Tweezer Experiments<br> - Traction Force Microscopy<br> In each folder, a README.txt document provides a detailed description of the content.</p> <p>We would like to acknowledge the support from the NIH (1R01GM140108), MathWorks, and the Jeptha H. and Emily V. Wade Award at the Massachusetts Institute of Technology. H.Y. acknowledges the MathWorks Mechanical Engineering Fellowship. M.G. acknowledges the Sloan Research Fellowship. This project received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement no. 891217 and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Project-ID 201269156 - SFB 1032 (Project B12) (E.B. and C.P.B.). P.R. is supported by France 2030, the French National Research Agency (ANR-16-CONV-0001), and the Excellence Initiative of Aix- Marseille University—A*MIDEX.</p>
Data for: Legacy community science data suggest reduced beached litter in response to a container deposit scheme at a local scale
<p>Marine debris is causing significant environmental harm. Legislation is being implemented to reduce litter, including schemes like container deposit legislation that incentivize the return of commonly littered items for recycling. While there is a suggestion that these schemes reduce litter, no study has examined the long-term impact on the local environment before and after implementation. This study analyzes community science data from 8 years prior to the implementation of a container deposit scheme, paired with 3 years of data afterwards, to assess the scheme's effectiveness at a local scale. Although using legacy datasets limits the generalizability of the conclusions compared to dedicated studies, the findings strongly indicate that container deposit schemes effectively manage targeted containers but have little impact on overall waste abundances. Long-term datasets like these are invaluable for assessing the impact of management efforts.</p>
Data for: Local adaptation of seed and seedling traits along a natural aridity gradient may both predict and constrain adaptive responses to climate change
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Data from: Shade tolerance controls the spectrum of crown sizes and its response to local competition across European and North American tree species: Implications for light interception strategies
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Data from: Seasonal bee communities vary in their responses to resources at local and landscape scales: Implication for land managers
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Data for: Legacy community science data suggest reduced beached litter in response to a container deposit scheme at a local scale
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Data from: Local environment and coral composition affect recovery and determine long-term coral responses to recurrent mass mortalities in the Lakshadweep Archipelago
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Local-scale thermal history influences metabolic response of marine invertebrates
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.