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Dataset results
14 results for “matrix code”
Matrix multiplication software and results bundle for paper "Tuning and optimization for a variety of many-core architectures without changing a single line of implementation code using the Alpaka library" for P^3MA submission
<p>This is the archive containing the matrix multiplication software and the results of the publication "<em>Tuning and optimization for a variety of many-core architectures without changing a single line of implementation code using the Alpaka library</em>" submitted to the P^3MA workshop 2017.</p> <p><strong>The archive has the following content:</strong></p> <ul> <li>Source code for the (tiled) matrix multiplication in "src": <ul> <li>regular version in "src/matmul": <ul> <li>Remote: https://github.com/theZiz/matmul.git (copy will be removed)</li> <li>Branch: topic-compatible-alpaka-0-1-0</li> <li>Commit: a63ba4810d6bfcca62c68dd57408af15028e78a3</li> </ul> </li> <li>forked version for XL in "src/matmul": <ul> <li>Remote: https://github.com/theZiz/matmul.git (copy will be removed)</li> <li>Branch: topic-xl-workaround</li> <li>Commit: 1fee028eccb8cf7b677e8071233e08aa9f81846a</li> </ul> </li> </ul> </li> <li>The compiled binaries and the results of the tuning and scaling runs are in "runs" in sub folders for each type of run and architectures.</li> </ul>
Raw data and analysis code for "Higher-order Process Matrix Tomography of a passively-stable Quantum SWITCH"
<p>This folder contains the raw data and analysis coded need to reproduce all of the major results in the manuscript "Higher-order Process Matrix Tomography of a passively-stable Quantum SWITCH". </p>
Total Ortholog Median Matrix (TOMM): an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes
<p>The increasing number of available genomic data allowed the development of phylogenomic analytical tools. Current methods compile information from single gene phylogenies, whether based on topologies or multiple sequence alignments. Generally, phylogenomic analyses elect gene families or genomic regions to construct phylogenomic trees. Here, we presented an alternative approach for Phylogenomics, named TOMM (Total Ortholog Median Matrix), to construct a representative phylogram composed by amino acid distance measures of all pairwise ortholog protein sequence pairs from desired species inside a group of organisms. The procedure is divided two main steps, (1) ortholog detection and (2) creation of a matrix with the median amino acid distance measures of all pairwise orthologous sequences. We tested this approach within three different group of organisms: Kinetoplastida protozoa, hematophagous Diptera vectors and Primates. Our approach was robust and efficacious to reconstruct the phylogenetic relationships for the three groups. Moreover, novel branch topologies could be achieved, providing insights about some phylogenetic relationships between some taxa.</p>
Total Ortholog Median Matrix (TOMM): an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes
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Original dataset, coded matrix, and Bayesian phylogenetic trees of three Late Ordovician brachiopod genera (Atrypida: Anazygidae)
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Data and code for "Tensor product random matrix theory"
<p>The data files and python scripts to generate Figure 3 of the manuscript "Tensor product random matrix theory" are uploaded.</p> <ul> <li>In the 'scripts' folder there are two python files. The file 'SFF.py' was used to generate the dataset. The file 'plot.py' generates Figure 3.</li> <li>In the 'processed data' folder there are .csv files with the data used to generate Figure 3.</li> <li>In the 'figures' folder the generated figure is included.</li> <li>In the 'additional plots' folder, three data sets and corresponding plots not incorporated in the paper are included.</li> </ul>
DNA matrix combined (nuclear and indels coded) datasets for Hyptidinae (Lamiaceae)
<p class="CxSpFirst">Hyptidinae, ca. 400 species, is an important component of Neotropical vegetation formations. Members of the subtribe possess flowers arranged in variously modified bracteolate cymes and nutlets with an expanded areole and all share a unique explosive mechanism of pollen release, except for <i>Asterohyptis</i>. In a recent phylogenetic study, the group had its generic delimitations rearranged with the recognition of 19 genera in the subtribe. Although the previous phylogenetic analysis covered almost all the higher taxa in the subtribe, it lacked a broader sampling at the species level. Here we present a new expanded phylogenetic analysis for the subtribe comprising 153 accessions of Hyptidinae sequenced for the nuclear nrITS, nrETS, and waxy regions and the plastid markers<i> trnL-F, trnS-G, trnD-T, </i>and<i> matK</i>. Our results widely support the previous phylogenetic results with some changes in the support and relationship between genera. It also uncovers the need for a new combination of <i>Eriope machrisae </i>in <i>Hypenia</i> and the phylogenetic position of <i>Hyptis</i> sect. <i>Rhytidea</i>, which was demonstrated to be part of <i>Mesosphaerum</i>. The generic delimitation in Hyptidinae is discussed, and we recommend that further studies with more markers are needed to confirm the monophyly of <i>Hyptidendron</i> and <i>Mesosphaerum</i>, as well as to support taxonomic changes on the infrageneric delimitation within <i>Hyptis </i>s. s.</p>
Data and code for "An open-source alignment method for multichannel infinite-conjugate microscopes using a ray transfer matrix analysis model"
<p>Original data and code associated with the paper "An open-source alignment method for multichannel infinite-conjugate microscopes using a ray transfer matrix analysis model".<br> <br> Further details on the data are available in the readme.txt files.</p>
DNA matrix combined (nuclear and indels coded) datasets for Hyptidinae (Lamiaceae)
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Data and R code for What you see is where you go: visibility influences movement decisions of a forest bird navigating a 3D structured matrix
<p>Animal spatial behaviour is often presumed to reflect responses to visual cues. However, inference of behaviour in relation to the environment is challenged by the lack of objective methods to identify the information that effectively is available to an animal from a given location. In general, animals are assumed to have unconstrained information on the environment within a detection circle of a certain radius (the perceptual range; PR). However, visual cues are only available up to the first physical obstruction within an animal's PR, making information availability a function of an animal's location within the physical environment (the effective visual perceptual range; EVPR). By using LiDAR data and viewshed analysis, we model forest birds' EVPRs at each step along a movement path. We found that the EVPR was on average 0.063% that of an unconstrained PR and, by applying a step-selection analysis, that individuals are 1.57 times more likely to move to a tree within their EVPR than to an equivalent tree outside it. This demonstrates that behavioural choices can be substantially impacted by the characteristics of an individual's EVPR and highlights that inferences made from movement data may be improved by accounting for the EVPR.</p>
Table-Matrix, containing all the codes generated from the inductive analysis process of the 78 articles that made up the final sample. (Not only Opportunity, but also Uncertainty: A systematic review of how entrepreneurship literature appropriates both constructs.)
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Data and R code for What you see is where you go: visibility influences movement decisions of a forest bird navigating a 3D structured matrix
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Long non-coding RNA RP11-820 promotes extracellular matrix production via regulating miR-3178/MYOD1 in human trabecular meshwork cells
GEO Series GSE126170. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by array.
Quantum LDPC code orthogonal parity-check matrix pairs H_Gamma, H_Delta
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.