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3 results for “media lab”
Genomics polymorphisms of Staphylococcus aureus strain NCTC 8325 in the lab stock maintained at TUM (WT), after 30 passes in BHI media (D) and after 30 passes detecting 4 -fold MIC increase to isocyanide -code I16- 3 biological replicates (A,B,C), and 3 independent colonies sequenced per replicate at the end of the experiment.
<p>Genomics polymorphisms of Staphylococcus aureus strain NCTC 8325 in the lab stock maintained at TUM (WT), after 30 passes in BHI media (D) and after 30 passes detecting 4 -fold MIC increase to isocyanide -code I16- 3 biological replicates (A,B,C), and 3 independent colonies sequenced per replicate at the end of the experiment. Determined from Illumina shotgun genomic sequencing datasets, mapping and analyses vs the reference genome of the strain https://www.ncbi.nlm.nih.gov/nuccore/NC_007795.1/</p>
Simulation cases of a lab-scale wet-operated stirred media mill using coupled CFD-DEM
<p>Simulation cases described in the article, "Coupled CFD-DEM simulation of pin-type wet stirred media mills using immersed boundary approach and hydrodynamic lubrication force", DOI: <a href="https://doi.org/10.1016/j.powtec.2024.120060" rel="nofollow">https://doi.org/10.1016/j.powtec.2024.120060</a></p> <p><strong>Pre-requisites:</strong> LIGGGHTS, OpenFOAM-6, cfdemCoupling, and their corresponding dependencies, Python (>3.6)</p> <p>*The versions of simulation softwares used in the simulation cases are taken from Institute for Particle Technology's (iPAT) GitLab repository: <a href="https://git.rz.tu-bs.de/partikeltechnik/" rel="nofollow">https://git.rz.tu-bs.de/partikeltechnik/</a></p> <p>To run the simulations in this repository, one should first install the pre-requisites i.e., LIGGGHTS, OpenFOAM-6 and cfdemCoupling. The repositiries can be found at Institute for Particle Technology's GitLab (<a href="https://git.rz.tu-bs.de/partikeltechnik/" rel="nofollow">https://git.rz.tu-bs.de/partikeltechnik/</a>) if not, they shall be requested.</p> <p>Running the simulations in the repositories includes, generation of the cases in "Base_Cases_Init", using the "generateCases.py" file (Python3), then run the "variables_Modify.py" file. Running of the "jobfile_Modify.py" and "jrun.py", sequentially, will submit the simulations to a HPC cluster. After the successful run of these simulations, the cases in the folders "Base_Cases_Stable" and "Base_Cases_Stable_Lubrication" can be launched in the same manner as described above, i.e., sequentially running "generateCases.py", "variables_Modify.py", "jobfile_Modify.py" and "jrun.py" (one needs to check if the corresponding restart files are existing in the Base_Cases_Stable*/Base_Case_Stable/Restart folder, which are generated from the "Base_Cases_Init" runs). Following this, the cases in "Base_Cases_Run_800_um", "Base_Cases_Run_1100_um", and "Base_Cases_Run_Lubrication" can be run using the same method as described above (one needs to check if the corresponding restart files are existing in the Base_Cases_Run*/Base_Case_Run/Restart folder, which are generated from the "Base_Cases_Stable" runs). After successfully running of the simulations the python file "generateAndRunPostFiles.py", in each of the corresponding "Base_Cases_Run_800_um", "Base_Cases_Run_1100_um", and "Base_Cases_Run_Lubrication" folders should be run.</p> <p> </p> <p> </p> <p> </p> <p><strong>Description:</strong> This repository provides the simulation cases to generate and run the simulation cases of the "stirred media mill" (MiniCeR). The simulations are setup to couple the CFD and DEM via two-way coupling and the corresponding files in the "Run" folder contain the post-processing scripts to extract the "collision/stress energies" and assemble them into a "collision/stress energy distribution". The simulations are setup in three stages, namely, "Init", "Stable", and "Run". The combinations of operating settings can be easily modified and the respective cases can be generated using the python scripts in the corresponding repositories. The scripts to run the simulations on the HPC-cluster systems are also added.</p> <p><strong><em>a. Init:</em></strong> This stage is to initialize the system with the particles. Three insertion faces are used to generate and insert the required number of particles (calculated according to their size and filling degree) into the system. The "base case" folder contains the necessary DEM scripts of the case setup and the required CAD (geometry) files. The python script "generateCases.py" generates the requested simulation cases according to the specified operating settings. It uses the help of "MakeCases.sh". The "variables_Modify.py" file modifies the variables in the generated folders of the simulation cases to alter the operation setting values. The "jobfile_Modify.py", and the "jrun.py" are used to modify the cluster job files and run the submit the simulation jobs onto the cluster, respectively.</p> <p><strong><em>b. Stable:</em></strong> This is the first stage couples the CFD and DEM. The restart files generated in the "Init" stage are used to start the coupling and run for a specified time. It follows the similar system as init, i.e., to generate the cases and modify the variables, but with additional generation and modifications in the CFD folder i.e., the mesh generation, etc. The simulations are launched in the same way as described above and the corresponding restart files are extracted.</p> <p><strong><em>c. Run:</em></strong> This second stage of the coupling of CFD and DEM launches the srabilized system and extracts the collision energies and stores them in ".txt" files which are postprocessed later to assemble the stress energy distribution. The post-processing to extract the stress energy distribution is done using the "Stress_Energy_Calculation.py" and "generateAndRunPostFiles.py", which generate corresponding folders of post-processing in each of the corresponding case folders.</p>
(Digital) Humanities and Media Labs Around the World
<p>The dataset presents a list of laboratories set up in the humanities, digital humanities, and media studies within universities across the world in 1983-2018. The data are collected and organized in an interactive map designed in the digital StoryMapJS tool, creating a valuable visible representation of the laboratory concept from a geographical and historical perspective. Based on the interactive map, I analyze the history of the laboratory in the humanities within a global context from the 1980s to 2018. The dataset includes 214 laboratories.</p> <p>Data collection</p> <p>I identified laboratories by using different resources such as universities’ websites, articles, and research projects. Besides, I sent a questionnaire to the most relevant networks in October 2018 to identify even more labs created in (digital) humanities and media studies at universities.</p> <p>Data organization</p> <p>I collected data about each lab based on its website and other resources. I extracted the following data: year established, year ended (if applicable), lab’s name, university, city, country, affiliation and location (if provided), disciplines and keywords (based on labs’ statements and projects and aiming to situate a lab), selected projects (if provided), purpose (a short quotation of a lab’s statement published on its website), website, and geographical latitude and longitude. I organized all the data in chronological order according to year established in Google Sheets. Next, I used StoryMapJS, a free tool designed by the Northwestern University’s Knight Lab, to map my data.</p>
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