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24 results for “methanotroph”
Raw data: The novel gammaproteobacterial methanotroph "Ca. Methylocalor cossyra" CH1 actively coexists with verrucomicrobial methanotrophs in acidic and hot geothermal soil
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SUPPLEMENTARY TABLES: Defining the Sphagnum core microbiome across the North American continent reveals a central role for diazotrophic-methanotrophs in the nitrogen and carbon cycles of boreal peatland ecosystems
<p>Peat mosses of the genus <em>Sphagnum</em> are ecosystem engineers that frequently predominate over photosynthetic production in boreal peatlands. <em>Sphagnum</em> spp. host diverse microbial communities capable of nitrogen-fixation (diazotrophy) and methane oxidation (methanotrophy), thereby potentially supporting plant growth under severely nutrient-limited conditions. Moreover, diazotrophic-methanotrophs represent a possible "missing link" between the carbon and nitrogen cycles, but the functional contributions of the <em>Sphagnum</em>-associated microbiome remain in question<em>.</em> A combination of metagenomics, metatranscriptomics, and dual-isotope incorporation assays was applied to investigate <em>Sphagnum</em> microbiome community composition across the North American continent and provide empirical evidence for diazotrophic-methanotrophy in <em>Sphagnum</em>-dominated ecosystems. Remarkably consistent prokaryotic communities were detected in over 250 <em>Sphagnum</em> SSU rRNA libraries from peatlands across the US (5 states, 17 bog/fen sites, 18 <em>Sphagnum</em> species), with twelve genera of the core microbiome comprising 60% of the relative microbial abundance. Additionally, nitrogenase (<em>nifH</em>) and SSU rRNA gene amplicon analysis revealed that nitrogen-fixing populations made up nearly 15% of the prokaryotic communities, predominated by <em>Nostocales</em> cyanobacteria and <em>Rhizobiales</em> methanotrophs. While cyanobacteria comprised the vast majority (>95%) of diazotrophs detected in amplicon and metagenome analyses, obligate methanotrophs of the genus <em>Methyloferula</em> (order <em>Rhizobiales</em>) accounted for one-quarter of transcribed <em>nifH</em> genes. Furthermore, in dual-isotope tracer experiments, members of the <em>Rhizobiales</em> showed substantial incorporation of <sup>13</sup>C-CH<sub>4</sub> and <sup>15</sup>N-N<sub>2</sub> isotopes into their rRNA. Our study characterizes the core <em>Sphagnum</em> microbiome across large spatial scales and indicates that diazotrophic methanotrophs, here defined as obligate methanotrophs of the rare biosphere (<em>Methyloferula</em> spp. of the <em>Rhizobiales</em>) that also carry out diazotrophy, play a keystone role in coupling of the carbon and nitrogen cycles in nutrient-poor peatlands.</p>
Dataset of publication: Deposit-feeding of Nonionellina labradorica (foraminifera) from an Arctic methane seep site and possible association with a methanotroph
<p>This file contains all TEM (Transmission Electron Microscopy) images of the foraminifera <em>N. labradorica </em>(foraminifera)<em> </em>used in a feeding experiment for the publication DOI: https://doi.org/10.5194/bg-2021-284</p> <p>Samples were collected at Gas Hydrate Pingo 3 (GHP3), app. 50 km south of Svalbard at 382m water depth at the mouth of Storfjordrenna, Barents Sea. Blade corer (BLC18) used for sampling was taken at following location 76°6'23.7"N 15°58'1.7"E.</p> <p> </p> <p> </p> <p>After sampling a feeding experiment was performed using the marine methanothroph<em> Methyloprofundus sedimenti</em>. More details can be fount in the methods paper. The file contains</p>
Information regarding the particulate methane monooxygenase enzyme of known methanotrophs
<p>A collection of information with regard to the particulate methane monooxygenase (pmmo) enzyme of known methanotrophs which was extracted from NCBI is published in this database. </p>
Microbial Metabolomics of Methanotrophes from Gradient Syringe
<p>Non-targeted metabolomics of organic extracts from methanotropes cultured on agarose in gradient syringe (ambient air vs methane) recorded on Exploris 480</p>
Chapter 5. Physiological stress response to sulfide exposure of freshwater anaerobic methanotrophic archaea
<p>Supplementary Tables 1-3.</p>
Non-targeted microbial metabolomics (DDA) of extracts from methanotroph cocultures
<p>Non-targeted microbial metabolomics (DDA) of extracts from methanotroph cocultures</p>
Methanotrophic flexibility of 'Ca. Methanoperedens' and its interactions with sulfate-reducing bacteria in the sediment of meromictic Lake Cadagno
<p><span>Supplementary Tables 2- 21 (as a single spreadsheet)</span></p>
Data from: Living apart together—bacterial volatiles influence methanotrophic growth and activity
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Methanotrophic bacterial symbionts fuel dense populations of deep-sea feather duster worms (Sabellida, Annelida) and extend the spatial influence of methane seepage
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Core metabolism shifts of methanol vs. methane growth in the methanotroph Methylomicrobium buryatense 5GB1
GEO Series GSE110541. Methylotuvimicrobium buryatense. 6 samples. Type: Expression profiling by high throughput sequencing.
OXYGEN-LIMITED METABOLISM IN THE METHANOTROPH METHYLOMICROBIUM BURYATENSE 5GB1C
GEO Series GSE101981. Methylotuvimicrobium buryatense. 14 samples. Type: Expression profiling by high throughput sequencing.
Metagenomic, metatranscriptomic and metaproteomic study of enrichment culture of M. oxyfera (denitrifying methanotroph)
GEO Series GSE18535. Candidatus Methylomirabilis oxygeniifera. 1 samples. Type: Expression profiling by high throughput sequencing.
A methanotrophic bacterium to enable direct methane capture for climate mitigation
GEO Series GSE221011. Methylotuvimicrobium buryatense. 4 samples. Type: Expression profiling by high throughput sequencing.
Biomarker Response of Aerobic Methanotrophs to Methane Oxidation Rates and Short-Term Methane and Oxygen Limitation
GEO Series GSE188821. Methylomicrobium album BG8. 8 samples. Type: Expression profiling by high throughput sequencing.
A mutagenic screen identifies a TonB-dependent receptor required for the lanthanide metal switch in the Type I methanotroph “Methylotuvimicrobium buryatense” 5GB1C
GEO Series GSE125909. Methylotuvimicrobium buryatense. 8 samples. Type: Expression profiling by high throughput sequencing.
Heterotrophic growth on formate is dependent on the maintenance of intracellular pH for the thermoacidophilic methanotroph Methylacidiphilum sp RTK17.1.
GEO Series GSE145277. Candidatus Methylacidiphilum infernorum. 3 samples. Type: Expression profiling by high throughput sequencing.
A laboratory-based model ecosystem reveals genetic determinants of methanotroph phenotypic heterogeneity in a methane-oxygen counter gradient
GEO Series GSE243827. Methylomonas sp. LW13. 9 samples. Type: Expression profiling by high throughput sequencing.
Hydrogen metabolism influences glycogen production in a verrucomicrobial methanotroph
GEO Series GSE132517. Candidatus Methylacidiphilum infernorum. 5 samples. Type: Expression profiling by high throughput sequencing.
Highly efficient methane biocatalysis revealed in a methanotrophic bacterium
GEO Series GSE51145. Methylotuvimicrobium alcaliphilum 20Z. 8 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.