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ShareScore release 0.7.1
Dataset results
3 results for “mgems”
mGEMS Enterococcus faecalis reference dataset
<p>This dataset contains the <em>E. faecalis</em> sequences (all available assemblies from the NCBI as of 2 February 2020 which could be assigned to a multilocus sequence type), their multilocus sequence types inferred with the mlst software (v2.18.1) using the MLST scheme described in <a href="https://doi.org/10.1128/JCM.02596-05">10.1128/JCM.02596-05</a>, and accession numbers used in the mGEMS publication as the reference dataset.</p>
mGEMS synthetic mixed samples (Supplementary Table)
<p>Supplementary Table from the mGEMS publication, which contains the information about the synthetic mixed samples in the manuscript. The table contains the accession numbers of the isolate sequencing reads assigned to each mixed sample, their lineage assignments, as well as assembly statistics (total length, number of contigs, N50, L50) for both the isolate sequencing data (assembled with shovill v0.9.0) and the synthetic mixed samples processed with the mGEMS pipeline (mGEMS binner v0.1.1, Themisto v0.1.1, mSWEEP v1.3.2, and shovill v0.9.0).</p>
mGEMS Staphylococcus aureus reference dataset
<p>This dataset contains the <em>S. aureus</em> sequences (assembled with shovill v0.9.0), their sequence type 22 clades, and accession numbers used in the mGEMS publication as the reference dataset.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.