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25 results for “mitochondrial control region”
Figure 2 in Examining metrics and magnitudes of molecular genetic differentiation used to delimit cetacean subspecies based on mitochondrial DNA control region sequences
Figure 2. Relationship between ΦST and Nei's estimate of net divergence (dA) among cetacean population, subspecies, and species pairs estimated using mitochondrial DNA control region sequence data. Specific values mentioned in the text are numbered: 1 = Neophocaena species; 2 = killer whale populations. The three green squares in the left-hand side of the figure (ΦST <0.07) represent, from bottom to top, the subspecies comparisons for S. attenuata, S. longirostris, and L. obscurus, respectively.
Figure 1 in Examining metrics and magnitudes of molecular genetic differentiation used to delimit cetacean subspecies based on mitochondrial DNA control region sequences
Figure 1. Box and whisker plots showing median and 1st and 3rd quartiles, and minimum and maximum values for six metrics of genetic divergence among cetacean population, subspecies, and species pairs estimated using mitochondrial DNA control region sequence data.
Figure 7 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 7. Median-joining network of 68 haplotypes from 485 wild boars from different regions of the world. Circle sizes are proportional to haplotype frequencies and numbers refer to haplotype codes in Table 2. Numbers on the branches indicate the number of nucleotide substitutions, if more than one. Major haplogroups are delimited by dashed lines. A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Haplotypes exclusive to Turkey are labeled in green.
Figure 3 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 3. Maximum likelihood phylogenetic tree of haplotypes of the Turkish wild boars (Sus scrofa) obtained in the present study, based on the partial D-loop sequences of mtDNA. Numbers above or below branches indicate bootstrap values. TR numbers refer to current haplotype numbers in Table 1 and H numbers refer to the published haplotype labels downloaded from GenBank (Table 2). E1: European 1 haplogroup/clade in Figure 5, NE: Near East haplogroup/ clade in Figure 5.
Figure 2 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 2. Various phenotypes of obtained Turkish wild boar individuals from different localities studied presently.
Figure 6 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 6. Bayesian inference tree based on 68 partial D-loop haplotypes of 485 wild boars (both obtained in this study and downloaded from GenBank). Posterior probabilities are indicated at nodes. Haplogroups: A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Outgroup taxa are Sus barbatus and Phacochoerus aethiopicus.
Figure 1 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 1. Location map of the 70 samples examined in this study: black dots indicate local samples of one or more individuals and numbers refer to locality names in Table 1. TT (Turkish Thrace, 1–4), SWA (Southwestern Anatolia, 5–11), CA (Central Anatolia, 12–26), NEA (Northeastern Anatolia, 27–30), and SEA (Southeastern Anatolia, 31–34).
Figure 5 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 5. Maximum likelihood tree based on 68 haplotypes from 485 wild boar D-loop region sequences (both obtained in this study and downloaded from GenBank). Numbers above or below branches indicate bootstrap support values. Haplogroups: A, Asian; NE, Near Eastern; E1, European E1; E2, European E2. Outgroup taxa are Sus barbatus and Phacochoerus aethiopicus.
Figure 4 in Mitochondrial DNA control region variability of wild boar Sus scrofa with various external phenotypes in Turkey
Figure 4. Bayesian phylogenetic tree constructed from haplotypes of the wild boar (Sus scrofa) samples collected in this study, based on the partial D-loop sequences of mtDNA. Posterior probabilities are indicated at nodes. TR numbers refer to current haplotype numbers in Table 1 and H numbers refer to the published haplotype labels downloaded from GenBank (Table 2). E1: European 1 haplogroup/clade in Figure 5, NE: Near East haplogroup/clade in Figure 5.
Data from: Routine mitochondrial recombination drives rapid concerted evolution of duplicated control regions in a wild fish
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Fig. 7 Leontopithecus chryso- pygus individual from a forest fragment with a in Examination of the Taxonomy and Diversification of Leontopithecus using the Mitochondrial Control Region
Fig. 7 Leontopithecus chryso- pygus individual from a forest fragment with a patched gold and black dorsal color pattern in contrast to the black body with orange/gold rump characteristic of Leontopithecus chryspygus.
Fig. 3 in Genetic variation in the spotted seal (Phoca largha Pallas, 1811) from the Rimsky-Korsakov Archipelago (Peter the Great Bay, western sea of Japan) as inferred from mitochondrial DNA control region sequences
Fig. 3. Consensus maximum likelihood tree demonstrating the matrilineal genealogy of some Phocidae species generated from the 460 bp mtDNA control region sequences. The numbers at branch nodes represent bootstrap support of 1000 replications for the maximum likelihood trees and posterior probabilities of 2,000,000 generations for the Bayesian trees with the same topology, respectively. The accession numbers of Phoca largha from Liaodong Bay are highlighted in bold. Scale bar indicates the relative branch lengths.
Fig. 2 in Genetic variation in the spotted seal (Phoca largha Pallas, 1811) from the Rimsky-Korsakov Archipelago (Peter the Great Bay, western sea of Japan) as inferred from mitochondrial DNA control region sequences
Fig. 2. Minimum spanning network showing the mutational relationships among Phoca largha haplotypes detected in a sample of 32 spotted seal underyearlings. The tick marks on the branches indicate mutational changes. The circle sizes correspond to the number of haplotypes. The haplotypes of groups (A) and (B) are shown in gray and white circles, respectively. The median vectors are indicated by dark dots.
Figure 2 in Complete mitochondrial genome of Tetraophasis szechenyii Madarász, 1885 (Aves: Galliformes: Phasianidae), and its genetic variation as inferred from the mitochondrial DNA Control Region
Figure 2. Median-joining network of all the control region haplotypes found in Tetraophasis szechenyii. Notes: Missing haplotypes in the network are represented by black dots; circle sizes are proportional to the number of individuals sharing the same haplotypes (n); each mutation step is shown as a short line connecting neighbouring haplotypes; numbers of mutations between haplotypes are indicated near branches if greater than 1.
Figure 1 in Complete mitochondrial genome of Tetraophasis szechenyii Madarász, 1885 (Aves: Galliformes: Phasianidae), and its genetic variation as inferred from the mitochondrial DNA Control Region
Figure 1. Molecular phylogenetic tree derived from the complete DNA sequences of 12 mitochondrial protein-coding genes using Bayesian inference and maximum likelihood analyses. Notes:The numbers beside the nodes are Bayesian posterior probabilities (≥ 0.9 retained) and bootstrap proportions of maximum likelihood analyses calculated with 100 replicates (≥ 50% retained); Anas platyrhynchos and Alectura lathami were set as outgroups; *clades not supported by Bayesian inference.
North Pacific harbor porpoise SNP and microhaplotype genotypes, mitochondrial control region haplotype sequences
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Fig. 1 in Genetic variation in the spotted seal (Phoca largha Pallas, 1811) from the Rimsky-Korsakov Archipelago (Peter the Great Bay, western sea of Japan) as inferred from mitochondrial DNA control region sequences
Fig. 1. Map of the Phoca largha sampling site.
Figure 4 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 4 - Observed and expected mismatch distribution under the sudden expansions model of the control region haplotypes in J. grypotus.
Figure 3 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 3 - Minimum spanning network showing genetic relationship among mtDNA control region haplotypes in J. grypotus (Circles represent haplotypes with sizes proportional to their respective frequencies. Tick marks represent deduced numbers of nucleotide substitutions along each branch)
Figure 2 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 2 - Phylogenetic tree of control region haplotypes constructed using neighbor-joining algorithms of J. grypotus.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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