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7
datasets available to search
ShareScore release 0.9.0
Dataset results
7 results for “motif enrichment”
Motif enrichment analyses obtained by centriMo on human enhancers
<p>We applied Centrimo (Bailey and Machanick 2012) from the MEME suite version 4.11.1 with default parameters to DNA sequences of regions ± 500 bp around the mid-points of enhancers from class 1 (lower %GC) and class 2 (higher %GC). Class 1 enhancer regions were used as foreground and class 2 enhancer regions as background and vice-versa. The MEME databases of motifs<br> considered for enrichment were derived from (Jolma et al. 2013) (jolma2013.meme), JASPAR (Mathelier et al. 2015a) (JASPAR_CORE_2016_vertebrates.meme), Cis-BP (Weirauch et al. 2014) (Homo_sapiens.meme), Swiss Regulon (Pachkov et al. 2013) (Swiss_Regulon_human_and_mouse.meme), and HOCOMOCO (Kulakovskiy et al. 2016) (HOCOMOCOv10_HUMAN_mono_meme_format.meme). The same procedure was applied to promoter regions ( ± 500 bp around gene starts) associated with class 1 and class 2 enhancers.</p>
ZSCAN4-binding motif - TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes
GEO Series GSE243628. Homo sapiens; Mus musculus. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
ZSCAN4-binding motif - TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes [RNA-Seq]
GEO Series GSE243627. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
The DNA-repair protein APE1 contributes with hnRNPA2B1 to motif-enriched miRNA secretion
GEO Series GSE230874. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
ZSCAN4-binding motif - TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes [ChIP-Seq]
GEO Series GSE243626. Mus musculus; Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of gene expression, motif and pattern of m6A modified region and m6A enrichment level in Ocular melanoma and Melanocyte cell lines. Gene expressin analysis of METTL3 knock down in PIG1, ALKBH
GEO Series GSE137675. Homo sapiens. 42 samples. Type: Expression profiling by high throughput sequencing; Other.
Motif-enrichment analysis identified binding sites for XBP1s in Neo-2/15 stimulated BBζ NK cells following co-cultured with AsPC-1 cells
GEO Series GSE243385. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.