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ShareScore release 0.9.0
Dataset results
12 results for “multi-locus analysis”
Supplementary material 2 from: Chen D, Liu Q, Chang J, Jiang A, Zhou F, Zhang Y, Zhang Z (2016) Multi-locus analysis supports the taxonomic validity of Arborophila gingica guangxiensis Fang Zhou & Aiwu Jiang, 2008. ZooKeys 555: 125-136. https://doi.org/10.3897/zookeys.555.6814
Figure S1 : Explanation note: Phylogenetic trees from the nuDNA matrix and each of the nuclear introns.
Data from: Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multi-locus analysis surpasses genome scan
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Data from: Multi-locus analysis of Pristionchus pacificus on La Réunion Island reveals an evolutionary history shaped by multiple introductions, constrained dispersal events, and rare out-crossing
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Data from: Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
Over half of all vertebrates are "fishes", which exhibit enormous diversity in morphology, physiology, behavior, reproductive biology, and ecology. Investigation of fundamental areas of vertebrate biology depend critically on a robust phylogeny of fishes, yet evolutionary relationships among the major actinopterygian and sarcopterygian lineages have not been conclusively resolved. Although a consensus phylogeny of teleosts has been emerging recently, it has been based on analyses of various subsets of actinopterygian taxa, but not on a full sample of all bony fishes. Here we conducted a comprehensive phylogenetic study on an unprecedented combination of broad taxonomic sampling of actinopterygian and sarcopterygian lineages (with a chondrichthyan outgroup) using a molecular data set of 21 independent loci. These data yielded a resolved phylogenetic hypothesis for extant Osteichthyes, including 1) reciprocally monophyletic Sarcopterygii and Actinopterygii, as currently understood, with polypteriforms as the first diverging lineage within Actinopterygii; 2) a monophyletic group containing gars and bowfin (= Holostei) as sister group to Teleostei; and 3) the earliest diverging lineage among teleosts being Elopomorpha, rather than Osteoglossomorpha. Relaxed-clock dating analysis employing a set of 24 newly applied fossil calibrations reveals divergence times that are more consistent with paleontological estimates than previous studies. Establishing a new phylogenetic pattern with accurate divergence dates for bony fishes illustrates several areas where the fossil record is incomplete and provides critical new insights on diversification of this important vertebrate group.
Supplementary material 1 from: Chen D, Liu Q, Chang J, Jiang A, Zhou F, Zhang Y, Zhang Z (2016) Multi-locus analysis supports the taxonomic validity of Arborophila gingica guangxiensis Fang Zhou & Aiwu Jiang, 2008. ZooKeys 555: 125-136. https://doi.org/10.3897/zookeys.555.6814
Table S1 : Explanation note: Primers used for PCR amplification and sequencing in this study.
Figure 2 from: Chen D, Liu Q, Chang J, Jiang A, Zhou F, Zhang Y, Zhang Z (2016) Multi-locus analysis supports the taxonomic validity of Arborophila gingica guangxiensis Fang Zhou & Aiwu Jiang, 2008. ZooKeys 555: 125-136. https://doi.org/10.3897/zookeys.555.6814
Figure 2 - Phylogenetic consensus trees from the mtDNA matrix and complete data matrix. Node values above the branches represented the BI posterior probability and ML bootstrap support. Values below the branches represent the divergence times (median) and 95% highest posterior density (HPD) between lineage groups, note that the divergence times in the multi-locus tree were estimated by species tree analysis. The last number in tip labels in the multi-locus tree represent the two haplotypes phased from diploid nuclear sequences.
Figure 1 from: Chen D, Liu Q, Chang J, Jiang A, Zhou F, Zhang Y, Zhang Z (2016) Multi-locus analysis supports the taxonomic validity of Arborophila gingica guangxiensis Fang Zhou & Aiwu Jiang, 2008. ZooKeys 555: 125-136. https://doi.org/10.3897/zookeys.555.6814
Figure 1 - Map of southeast China showing the distribution area of Arborophila gingica. The purple area represents the distribution of the nominate subspecies Arborophila gingica gingica according to del Hoyo and Collar (2014), with the dark blue dot indicating the sampling site in Wuyishan Mountain. The orange dots represent the three isolated populations of Arborophila gingica guangxiensis (Zhou and Jiang 2008), with the sampling site in Jiuwanshan Mountain.
Data from: Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
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DNA methylation analysis in multi-locus imprinting disturbances
GEO Series GSE78773. Homo sapiens. 95 samples. Type: Methylation profiling by genome tiling array.
Transcript analysis of multi-locus sampled tumor tissue in patients with non-small cell lung cancer
GEO Series GSE112996. Homo sapiens. 45 samples. Type: Expression profiling by high throughput sequencing.
Uncovering the phenotypic consequences of multi-locus imprinting disturbances using genome-wide methylation analysis in genomic imprinting disorders
GEO Series GSE237503. Homo sapiens. 19 samples. Type: Methylation profiling by array.
CGH analysis of Campylobacter jejuni isolates previously analyzed by Multi-Locus Sequence Typing
GEO Series GSE9919. Campylobacter jejuni. 45 samples. Type: Genome variation profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.