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165 results for “multimodal imaging”
Disentangling the origins of confidence in speeded perceptual judgments through multimodal imaging
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MultiCaRe: An open-source clinical case dataset for medical image classification and multimodal AI applications
<p>The dataset contains multi-modal data from over 70,000 open access and de-identified case reports, including metadata, clinical cases, image captions and more than 130,000 images. Images and clinical cases belong to different medical specialties, such as oncology, cardiology, surgery and pathology. The structure of the dataset allows to easily map images with their corresponding article metadata, clinical case, captions and image labels. Details of the data structure can be found in the file data_dictionary.csv.</p> <p>More than 90,000 patients and 280,000 medical doctors and researchers were involved in the creation of the articles included in this dataset. The citation data of each article can be found in the metadata.parquet file.</p> <p>Refer to the examples showcased in this <a href="https://github.com/mauro-nievoff/MultiCaRe_Dataset">GitHub repository</a> to understand how to optimize the use of this dataset.<br><br>The license of the dataset as a whole is CC BY-NC-SA. However, its individual contents may have less restrictive license types (CC BY, CC BY-NC, CC0). For instance, regarding image filess, 66K of them are CC BY, 32K are CC BY-NC-SA, 32K are CC BY-NC, and 20 of them are CC0.</p>
ROCOv2: Radiology Objects in COntext Version 2, An Updated Multimodal Image Dataset
<p>Recent advances in deep learning techniques have enabled the development of systems for automatic analysis of medical images. These systems often require large amounts of training data with high quality labels, which is difficult and time consuming to generate.</p> <p>Here, we introduce Radiology Object in COntext Version 2 (ROCOv2), a multimodal dataset consisting of radiological images and associated medical concepts and captions extracted from the PubMed Open Access subset. Concepts for clinical modality, anatomy (X-ray), and directionality (X-ray) were manually curated and additionally evaluated by a radiologist. Unlike MIMIC-CXR, ROCOv2 includes seven different clinical modalities.</p> <p>It is an updated version of the ROCO dataset published in 2018, and includes 35,705 new images added to PubMed since 2018, as well as manually curated medical concepts for modality, body region (X-ray) and directionality (X-ray). The dataset consists of 79,789 images and has been used, with minor modifications, in the concept detection and caption prediction tasks of ImageCLEFmedical 2023. The participants had access to the training and validation sets after signing a user agreement.</p> <p>The dataset is suitable for training image annotation models based on image-caption pairs, or for multi-label image classification using the UMLS concepts provided with each image, e.g., to build systems to support structured medical reporting.</p> <p>Additional possible use cases for the ROCOv2 dataset include the pre-training of models for the medical domain, and the evaluation evaluation of deep learning models for multi-task learning.</p>
Raw data accompanying the manuscript "Multiscale and multimodal optical imaging of the human liver"
<p>These are the raw datasets used to generate the figures for the manuscript entitled "Multiscale and multimodal optical imaging of the human liver". The file CARS_SRS.zip contains folders with all raw CARS and SRS data (TIFF format). The file CLSM.zip contains confocal laser scanning microscopy data using the manufacturers data format (Zeiss). The file LSFM.zip contains light sheet fluorescence microscopy data files using the manufacturers data format (LaVision Biotec). The file OPT.zip contains raw optical projection tomography data at different excitation wavelengths (TIFF format). The file SRSIM.zip contains reconstructed structured illumination microscopy data files (TIFF format).</p>
On the Effectiveness of Text and Image Embeddings in Multimodal Hate Speech Detection
<p>Additional resources for the paper:</p> <h3><strong><a href="https://ieeexplore.ieee.org/abstract/document/10826088">On the Effectiveness of Text and Image Embeddings in Multimodal Hate Speech Detection.</a></strong></h3> <p>Lewis, N., Cavalcante, C. C., Boukouvalas, Z., & Corizzo, R.</p> <p><em>2024 IEEE International Conference on Big Data (BigData)</em> (pp. 3277-3281). IEEE.</p> <pre> </pre> <p> </p> <p>MMHS150K [1] is a manually labeled multimodal dataset that contains $150000$ tweets with two modalities: text, and corresponding image. Tweets are collected from September 2018 until February 2019 and are labeled according to different types of hate speech: no attacks to any community, racist, sexist, homophobic, religion-based attacks, or attacks to other communities. </p> <p>We extract vector embeddings leveraging different text (BERT, OpenAI) and image (ResNet, PVT, ViT) modele backbones and assess their effectiveness in the hate speech detection task.</p> <p> </p> <h2>Citation:</h2> <pre>@inproceedings{lewis2024effectiveness, title={On the Effectiveness of Text and Image Embeddings in Multimodal Hate Speech Detection}, author={Lewis, Nora and Cavalcante, Charles C and Boukouvalas, Zois and Corizzo, Roberto}, booktitle={2024 IEEE International Conference on Big Data (BigData)}, pages={3277--3281}, year={2024}, organization={IEEE} }</pre>
Dataset accompanying manuscript "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope"
<p>Raw images and microscope calibration metadata for reconstruction of datasets presented in Fig. 1 and Fig. 3 of "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope". Notebooks demonstrating steps in the label-free and fluorescence anisotropy reconstruction pipelines can be found at https://github.com/mehta-lab/miPolScope.</p>
Fabrication and characterization of a multimodal 3D printed mouse phantom for ionoacoustic quality assurance in image-guided pre-clinical proton radiation research
<p>Dataset related to the publication: "Fabrication and characterization of a multimodal 3D printed mouse phantom for ionoacoustic quality assurance in image-guided pre-clinical proton radiation research"</p>
MSD-I: Million Song Dataset with Images for Multimodal Genre Classification
<p>The Million Song Dataset (https://labrosa.ee.columbia.edu/millionsong/) is a collection of metadata and precomputed audio features for 1 million songs. Along with this dataset, a dataset with annotations of 15 top-level genres with a single label per song was released. In our work, we combine the CD2c version of this genre datase (http://www.tagtraum.com/msd_genre_datasets.html) with a collection of album cover images. </p> <p><br> The final dataset contains 30,713 tracks from the MSD and their related album cover images, each annotated with a unique genre label among 15 classes. Based on an initial analysis on the images, we identified that this set of tracks is associated to 16,753 albums, yielding an average of 1.8 songs per album.</p> <p>We randomly divide the dataset into three parts: 70% for training, 15% for validation, and 15% for test, with no artist and album overlap across these sets. This is crucial to avoid possible overfitting, as the classifier may learn to predict the artist instead of the genre. </p> <p> </p> <p>Content:</p> <p>MSD-I dataset (mapping, metadata, annotations and links to images)<br> Data splits and feature vectors for TISMIR single-label classification experiments </p> <p>These data can be used together with the Tartarus deep learning python module https://github.com/sergiooramas/tartarus.</p> <p> </p> <p>Scientific References:</p> <p>Please cite the following paper if using MSD-I dataset or Tartarus software.</p> <p>Oramas, S., Barbieri, F., Nieto, O., and Serra, X (2018). Multimodal Deep Learning for Music Genre Classification, Transactions of the International Society for Music Information Retrieval, V(1).</p>
Dataset related to article "Distribution of pamiparib, a novel inhibitor of poly(ADP-ribose)-polymerase (PARP), in tumor tissue analyzed by multimodal imaging"
<p>This record contains data related to article "Distribution of pamiparib, a novel inhibitor of poly(ADP-ribose)-polymerase (PARP), in tumor tissue analyzed by multimodal imaging"</p> <p><span>Pamiparib is a potent and selective oral PARP1/2 inhibitor (PARPi). Pamiparib has good bioavailability and showed greater cytotoxic potency and similar DNA-trapping capacity compared to olaparib. It is not affected by ATP-binding cassette transporters. Consequently, pamiparib may be useful in overcoming drug resistance caused by poor drug distribution in tumor due to overexpression of these efflux pump [1]. Mass spectrometry imaging (MSI) is a powerful technology that allows to study drugs distribution in tissues while maintaining spatial information [2]. Here, MSI was applied to visualize pamiparib in tumor in combination with spatial metabolomics and lipidomics, LC-MS/MS analysis, immunofluorescence analysis, and histological staining to gain a comprehensive understanding of how pamiparib is distributed. The results show that pamiparib was evenly distributed in ovarian tumor models, including those that overexpress P-glycoprotein (P-gp). In contrast, olaparib was not detected by MSI in any of the analyzed tumors, despite the comparable sensitivity of the analytical method. This difference in tumor distribution was confirmed by LC-MS/MS analysis. </span></p>
Supplementary material - Non-invasive Multimodal Imaging Reveals Early Therapy-Induced Senescence in Human Cancer Cells
<p>The repository features .xls and .txt worksheets including all the data used through this work and reported in the manuscript figures and graphs. More precisely, we included the following: </p> <ul> <li>Figure 2. Raw pixel-wise signals detected in NLO images of TIS cells control cells that were used to perform the colocalization graphs and analyses reported. We describe the average colocalization of SRS and F-CARS signals, and TPEF and E-CARS signals, in both phenotypes.</li> <li>Figure 4. Raw data from image analyses of TPEF and SRS channels of multimodal NLO images, divided in 5 different time points over the therapy follow-up period. The data describe the early rearrangement of mitochondria (TPEF) and lipid vesicles (SRS) in TIS cells, with respect to control counterparts.</li> <li>Figure 6. Raw data from image analyses of QPI images, divided in 4 different time points over the therapy follow-up period. The data describe the early morphological modifications of TIS cells, with respect to control counterparts.</li> </ul>
Study of Innovative Multimodal Imaging Biomarkers to Predict Anatomical Outcome in Naive Patients With wAMD Treated With Brolucizumab.
ClinicalTrials.gov study NCT04774926. IPD Sharing: YES. Countries: 1. Publications: 1.
msiFlow: Automated Workflows for Reproducible and Scalable Multimodal Mass Spectrometry Imaging and Immunofluorescence Microscopy Data Processing and Analysis
<p>This record contains example and result data of msiFlow.</p> <p>msiFlow is a collection of automated workflows for reproducible and scalable multimodal mass spectrometry imaging (MSI) and immunofluorescence microscopy (IFM) data processing and analysis. Using an experimental mouse model for urinary tract infection, induced by uropathogenic E.coli (UPEC), we generated data by</p> <ul> <li>matrix-assisted laser desorption ionisation mass spectrometry imaging with laser-induced postionisation (MALDI-2 MSI) using the Bruker timsTOFfleX instrument</li> <li>transmission-mode MALDI-2 MSI (t-MALDI-2)</li> <li>immunofluorescence microscopy (IFM) using the MACSima system from Miltenyi </li> </ul> <p>msiFlow was tested on MALDI-2 MSI, t-MALDI-2 MSI and IFM data of control and UPEC-infected mouse bladder sections. In IFM we used Ly6G and actin for staining neutrophils and the muscle layer. We validated msiFlow on MALDI MSI data of bone marrow (BM)-derived neutrophils. Tentative lipid annotations were validated by MALDI DDA MSI and MALDI MS/MS. All data used and results generated by msiFlow are included in this dataset (besides the intermediate results of the MALDI-2 preprocessing due to data size).</p> <p>The dataset contains the following zip files:</p> <table> <tbody> <tr> <td><strong>zip file</strong></td> <td><strong>description</strong></td> </tr> <tr> <td>ly6g_heterogeneity.zip</td> <td>example and result data (Ly6G clusters) for molecular_heterogeneity_flow</td> </tr> <tr> <td>if_segmentation.zip</td> <td>example and result data (Ly6G segmentation) for if_segmentation_flow</td> </tr> <tr> <td>ly6g_heterogeneity_signatures.zip</td> <td>example and result data (lipids for Ly6G clusters) for molecular_signatures_flow</td> </tr> <tr> <td>ly6g_molecular_signatures.zip</td> <td>example and result data (lipids for Ly6G) for molecular_signatures_flow</td> </tr> <tr> <td>msi_if_registration.zip</td> <td>example and result data for msi_if_registration_flow</td> </tr> <tr> <td>msi_segmentation.zip</td> <td>example and result data (segmented MSI bladder data) for msi_segmentation_flow</td> </tr> <tr> <td>region_group_analysis.zip</td> <td>example and result data (regulated lipids in different bladder tissue regions) for region_group_analysis_flow</td> </tr> <tr> <td>macsima.zip</td> <td>raw IFM data of UPEC-infected bladders containing Ly6G, actin and autofluorescence images</td> </tr> <tr> <td>maldi-bm-neutrophils.zip</td> <td>raw and pre-processed MALDI MSI data of BM-derived neutrophils</td> </tr> <tr> <td>t-maldi-2.zip</td> <td>raw t-MALDI-2 MSI data of a UPEC-infected bladder section</td> </tr> <tr> <td>maldi-2-<em>group-sampleno</em>.zip</td> <td>raw MALDI-2 MSI data of a control/UPEC bladder section</td> </tr> <tr> <td>MALDI_DDA_MSI.zip</td> <td>raw MALDI MSI data acquired in DDA mode</td> </tr> <tr> <td>TIMS_MS_MS.zip</td> <td>raw MALDI TIMS MS/MS data</td> </tr> </tbody> </table> <p> </p>
Analysis on Multimodal Imaging of 'stealth' Choroidal Neovascularization in Central Serous Chorioretinopathy
<p><strong>Purpose:</strong> To investigate the prevalence of concurrent choroidal neovascularization (CNV) in patients with clinically diagnosed of central serous chorioretinopathy (CSC) and analyze the multimodal imaging characteristics of CSC with ‘stealth’ CNV (CSC-sCNV). <strong>Design: </strong>Retrospective, observational cross-sectional study. <strong>Methods</strong><strong>:</strong> The current study analyzed the clinical data of 111 clinically diagnosed of CSC patients (134 eyes) who received fluorescein fundus angiography (FFA), indocyanine green angiography (ICGA), and optical coherence tomography angiography (OCTA) at their initial visit. The CSC-CNV that can be detected by FFA+ICG was defined as classic CSC-CNV (CSC-cCNV), and CSC-CNV that cannot be detected by FFA+ICG but can be detected by OCTA was defined as CSC-sCNV. The multimodal imaging characteristics of CSC-sCNV were analyzed.<strong> Results: </strong>The concurrent CNV was found in 29 eyes (21.6%) of 28 patients (25.2%), who were significantly older than those without CNV (P=0.039). Among the 29 eyes, 6 eyes (20.7%) were CSC-cCNV and 23 (79.3%) were CSC-sCNV. All CSC-sCNV eyes were type 1 CNV, of which, 22 had photoreceptor layer defects of varying severities. OCTA showed 4 (17.4%) were active CNV and 19 (82.6%) were inactive CNV based on the morphology features. CSC-sCNV lesions manifested as smoke-stack leakage, diffuse RPE changes with/without ink-blot leakage and normal fluorescence on FFA (1 eye, 7 eyes, 10 eyes and 5 eyes respectively). ICGA showed no typical CNV features in CSC-sCNV but choroidal vasodilation beneath CNV lesions and choroidal hyperpermeability at the posterior pole.<strong> Conclusion:</strong> CSC-sCNV may be the primary phenotype of CSC-CNV and its inactivity might be the reason that it cannot be detected by FFA.</p>
Datasets for Evaluation of Multimodal Image Registration
<p><strong>Description</strong></p> <ul> <li><strong>Aerial data</strong></li> <li>The Aerial dataset is divided into 3 sub-groups by IDs: {7, 9, 20, 3, 15, 18}, {10, 1, 13, 4, 11, 6, 16}, {14, 8, 17, 5, 19, 12, 2}. Since the images vary in size, each image is subdivided into the maximal number of equal-sized non-overlapping regions such that each region can contain exactly one 300x300 px image patch. Then one 300x300 px image patch is extracted from the centre of each region. The particular 3-folded grouping followed by splitting leads to that each evaluation fold contains 72 test samples. <ul> <li> <p>Modality A: Near-Infrared (NIR)</p> </li> <li> <p>Modality B: three colour channels (in B-G-R order)</p> </li> </ul> </li> <li><strong>Cytological data</strong></li> <li>The Cytological data contains images from 3 different cell lines; all images from one cell line is treated as one fold in 3-folded cross-validation. Each image in the dataset is subdivided from 600x600 px into 2x2 patches of size 300x300 px, so that there are 420 test samples in each evaluation fold. <ul> <li> <p>Modality A: Fluorescence Images</p> </li> <li> <p>Modality B: Quantitative Phase Images (QPI)</p> </li> </ul> </li> <li><strong>Histological dataset</strong></li> <li>For the Histological data, to avoid too easy registration relying on the circular border of the TMA cores, the evaluation images are created by cutting 834x834 px patches from the centres of the original 134 TMA image pairs. <ul> <li> <p>Modality A: Second Harmonic Generation (SHG)</p> </li> <li> <p>Modality B: Bright-Field (BF)</p> </li> </ul> </li> </ul> <p>The evaluation set created from the above three publicly available 2D datasets consists of images undergone 4 levels of (rigid) transformations of increasing size of displacement. The level of transformations is determined by the size of the rotation angle θ and the displacement tx & ty, detailed in <a href="https://github.com/MIDA-group/MultiRegEval/tree/master/Datasets">this table</a>. Each image sample is transformed exactly once at each transformation level so that all levels have the same number of samples.</p> <ul> <li><strong>Radiological data</strong></li> <li>The Radiological dataset is divided into 3 sub-groups by patient IDs: {109, 106, 003, 006}, {108, 105, 007, 001}, {107, 102, 005, 009}. Since the Radiological dataset is non-isotropic (and also of varying resolution), it is resampled using B-spline interpolation to 1 mm<sup>3</sup> cubic voxels, taking explicit care to not resample twice; displaced volumes are transformed and resampled in one step. <ul> <li> <p>Modality A: T1-weighted MRI</p> </li> <li> <p>Modality B: T2-weighted MRI</p> </li> </ul> </li> </ul> <p>(Run <a href="https://github.com/MIDA-group/MultiRegEval/blob/master/utils/make_rire_patches.py"><code>make_rire_patches.py</code></a> to generate the sub-volumes.)</p> <p>Reference sub-volumes of size 210x210x70 voxels are cropped directly from centres of the (non-displaced) resampled volumes. Similarly as for the aforementioned 2D datasets, random (uniformly-distributed) transformations are composed of rotations θx, θy ∈ [-4, 4] degrees around the x- and y-axes, rotation θz ∈ [-20, 20] degrees around the z-axis, translations tx, ty ∈ [-19.6, 19.6] voxels in x and y directions and translation tz ∈ [-6.5, 6.5] voxels in z direction. 40 rigid transformations of increasing sizes of displacement are applied to each volume. Transformed sub-volumes, of size 210x210x70 voxels, are cropped from centres of the transformed and resampled volumes.</p> <p> </p> <p>In total, it contains 864 image pairs created from the aerial dataset, 5040 image pairs created from the cytological dataset, 536 image pairs created from the histological dataset, and metadata with scripts to create the 480 volume pairs from the radiological dataset. Each image pair consists of a reference patch <span class="math-tex">\(I^{\text{Ref}}\)</span> and its corresponding initial transformed patch <span class="math-tex">\(I^{\text{Init}}\)</span> in both modalities, along with the ground-truth transformation parameters to recover it.</p> <p>Scripts to calculate the registration performance and to plot the overall results can be found in <a href="https://github.com/MIDA-group/MultiRegEval">https://github.com/MIDA-group/MultiRegEval</a>, and instructions to generate more evaluation data with different settings can be found in <a href="https://github.com/MIDA-group/MultiRegEval/tree/master/Datasets#instructions-for-customising-evaluation-data">https://github.com/MIDA-group/MultiRegEval/tree/master/Datasets#instructions-for-customising-evaluation-data</a>.</p> <p> </p> <p><strong>Metadata</strong></p> <p>In the <code>*.zip</code> files, each row in <code>{Zurich,Balvan}_patches/fold[1-3]/patch_tlevel[1-4]/info_test.csv</code> or <code>Eliceiri_patches/patch_tlevel[1-4]/info_test.csv</code> provides the information of an image pair as follow:</p> <ul> <li> <p>Filename: identifier(ID) of the image pair</p> </li> <li> <p>X1_Ref: x-coordinate of the upper-left corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>Y1_Ref: y-coordinate of the upper-left corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>X2_Ref: x-coordinate of the lower-left corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>Y2_Ref: y-coordinate of the lower-left corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>X3_Ref: x-coordinate of the lower-right corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>Y3_Ref: y-coordinate of the lower-right corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>X4_Ref: x-coordinate of the upper-right corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>Y4_Ref: y-coordinate of the upper-right corner of reference patch I<sub>Ref</sub></p> </li> <li> <p>X1_Trans: x-coordinate of the upper-left corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>Y1_Trans: y-coordinate of the upper-left corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>X2_Trans: x-coordinate of the lower-left corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>Y2_Trans: y-coordinate of the lower-left corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>X3_Trans: x-coordinate of the lower-right corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>Y3_Trans: y-coordinate of the lower-right corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>X4_Trans: x-coordinate of the upper-right corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>Y4_Trans: y-coordinate of the upper-right corner of transformed patch I<sub>Init</sub></p> </li> <li> <p>Displacement: mean Euclidean distance between reference corner points and transformed corner points</p> </li> <li> <p>RelativeDisplacement: the ratio of displacement to the width/height of image patch</p> </li> <li> <p>Tx: randomly generated translation in the x-direction to synthesise the transformed patch I<sub>Init</sub></p> </li> <li> <p>Ty: randomly generated translation in the y-direction to synthesise the transformed patch I<sub>Init</sub></p> </li> <li> <p>AngleDegree: randomly generated rotation in degrees to synthesise the transformed patch I<sub>Init</sub></p> </li> <li> <p>AngleRad: randomly generated rotation in radian to synthesise the transformed patch I<sub>Init</sub></p> </li> </ul> <p>In addition, each row in <code>RIRE_patches/fold[1-3]/patch_tlevel[1-4]/info_test.csv</code> has following columns:</p> <ul> <li>Z1_Ref: z-coordinate of the upper-left corner of reference patch I<sub>Ref</sub></li> <li>Z2_Ref: z-coordinate of the lower-left corner of reference patch I<sub>Ref</sub></li> <li>Z3_Ref: z-coordinate of the lower-right corner of reference patch I<sub>Ref</sub></li> <li>Z4_Ref: z-coordinate of the upper-right corner of reference patch I<sub>Ref</sub></li> <li>Z1_Trans: z-coordinate of the upper-left corner of transformed patch I<sub>Init</sub></li> <li>Z2_Trans: z-coordinate of the lower-left corner of transformed patch I<sub>Init</sub></li> <li>Z3_Trans: z-coordinate of the lower-right corner of transformed patch I<sub>Init</sub></li> <li>Z4_Trans: z-coordinate of the upper-right corner of transformed patch I<sub>Init</sub></li> <li>(...and similarly, coordinates of the 5th-8th corners)</li> <li>Tz: randomly generated translation in z-direction to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleDegreeX: randomly generated rotation around X-axis in degrees to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleRadX: randomly generated rotation around X-axis in radian to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleDegreeY: randomly generated rotation around Y-axis in degrees to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleRadY: randomly generated rotation around Y-axis in radian to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleDegreeZ: randomly generated rotation around Z-axis in degrees to synthesise the transformed patch I<sub>Init</sub></li> <li>AngleRadZ: randomly generated rotation around Z-axis in radian to synthesise the transformed patch I<sub>Init</sub></li> </ul> <p> </p> <p><strong>Naming convention</strong></p> <ul> <li><strong>Aerial Data</strong> <ul> <li> <pre> zh{ID}_{iRow}_{iCol}_{ReferenceOrTransformed}.png</pre> </li> <li>Example: <code>zh5_03_02_R.png</code> indicates the <em>Reference </em>patch of the <em>3rd row</em> and <em>2nd column</em> cut from the image with ID <code>zh5</code>.</li> </ul> </li> <li><strong>Cytological data</strong> <ul> <li> <pre> {{cellline}_{treatment}_{fieldofview}_{iFrame}}_{iRow}_{iCol}_{ReferenceOrTransformed}.png</pre> </li> <li>Example: <code>PNT1A_do_1_f15_02_01_T.png</code> indicates the <em>Transformed </em>patch of the <em>2nd row</em> and <em>1st column</em> cut from the image with ID <code>PNT1A_do_1_f15</code>.</li> </ul> </li> <li><strong>Histological data</strong> <ul> <li> <pre> {ID}_{ReferenceOrTransformed}.tif</pre> </li> <li>Example: <code>1B_A4_T.tif</code> indicates the <em>Transformed </em>patch cut from the image with ID <code>1B_A4</code>.</li> </ul> </li> </ul> <ul> <li><strong>Radiological Data</strong> <ul> <li> <pre> patient_{ID}_{iTransform}_T.mhd</pre> </li> <li> <pre> patient_{ID}_R.mhd </pre> </li> <li>Example: <code>patient_003_8_T.mhd</code> indicates the sub-volume <em>Transformed </em>with the <em>8th random transformation</em> cut from the volume with patient ID <code>003</code>; <code>patient_003_R.mhd</code> indicates the <em>Reference </em>sub-volume the volume with patient ID <code>003</code>.</li> </ul> </li> </ul> <p> </p> <p>This dataset was originally produced by the authors of <em><a href="https://arxiv.org/abs/2103.16262">Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Study</a></em>.</p>
A Non-interventional, International, Multicentre Clinical Research Study to Build the Largest Collection of Multimodal Data (Including Clinical Data, Imaging Data and Omics Data) in Oncology
ClinicalTrials.gov study NCT06625203. IPD Sharing: YES. Countries: 4. Publications: 7.
A Study to Investigate Aqueous Humor and Multimodal Imaging Biomarkers in Treatment-Naïve Participants With Diabetic Macular Edema Treated With Faricimab
ClinicalTrials.gov study NCT04597918. IPD Sharing: YES. Countries: 7. Publications: 0.
Multimodal Imaging Diagnosis and Decision Aid System for Hepatic Echinococcosis Based on Image Omics and Vision Macromodel
ClinicalTrials.gov study NCT06540742. IPD Sharing: NO. Countries: 1. Publications: 1.
Image distortion data from "An open-source MRI compatible frame for multimodal presurgical mapping in macaque and capuchin monkeys"
Open the record for dataset details and reuse information.
Multimodality Imaging Assessment of Desmoid Tumors: The Great Mime in the Era of Multidisciplinary Team
<p>I uploaded the images of manuscript "Multimodality Imaging Assessment of Desmoid Tumors: The Great Mime in the Era of Multidisciplinary Team".</p>
Speckle Images for Single-Pixel Multimode Fiber Spectrometer
<p>** General Information ** </p> <p>- Dataset includes 2500 speckle images of size 256x320 used to calibrate the system</p> <p>- Dataset includes 2500 speckle images of size 256x320 used to test the system</p> <p>- 50 wavelengths between 1549.750 nm and 1550.240 nm are used in the measurements</p> <p>- The separation between the consecutive wavelengths is 10 pm</p> <p><br> ** FOLDER: calibration_data **</p> <p>- This folder consists of the speckle images used to construct the calibration matrix</p> <p>- "calibration_WAVX_SLMY.png" is the speckle image of wavelength X under SLM pattern optimized for wavelength Y</p> <p><br> ** FOLDER: test_data **</p> <p>- This folder consists of the speckle images used to test the system in the reconstruction step</p> <p>- "test_WAVX_SLMY.png" is the speckle image of wavelength X under SLM pattern optimized for wavelength Y</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.