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4 results for “myExperiment”
myExperiment Workflows, "abstracted" (all non-analytical nodes removed)
<p>To do the SCOFF analysis (detecting highly similar workflow fragments) we took all bioinformatics-related workflows from myExperiment and removed all non-analytical nodes. These included nodes referred-to as "shims" - those that do data structure/type transformations, but not any "semantic" transformation. This deposit contains all such abstracted workflows.</p>
OPMW Formatted Workflow Fragments from myExperiment Workflows
<p>The bioinformatics-associated workflows from myExperiment.org, fragmented randomly into 2 or 3-node (overlapping) fragments. Each fragment is then represented as an OPMW ontology instance (opmw:WorkflowTemplateProcess), which is annotated with as many ontological terms as could be discovered based on the kinds of services in each node of that fragment.</p>
Output from the SCOFF clustering of myExperiment Workflow Fragments
<p>Using a semantic-similarity approach, we clustered the annotated, abstracted workflow fragments (see https://doi.org/10.5281/zenodo.1147545 and https://doi.org/10.5281/zenodo.1147485). This zip file contains the results of that clustering.</p>
myExperiment workflow types
<p>A JSON document containing the list of workflow types available on http://myexperiment.org, and the number of workflows available of each type.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.