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23 results for “naip”
Normalized Difference Vegetation Index (NDVI) derived from 2019 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates two vegetation indices—Normalized Difference Vegetation Index (NDVI) and Soil Adjusted Vegetation Index (SAVI) from the National Agriculture Imagery Program (NAIP) remotely sensed imagery. The intent is to make remotely sensed variables and visualizations accessible to stakeholders and researchers studying the Phoenix metropolitan area. NDVI and SAVI are calculated from the 2019 NAIP imagery (1m resolution). This dataset extends the 2010, 2013, 2015, and 2017 NDVI and SAVI products derived from NAIP imagery (also 1m resolution). All images are cropped to the CAP study area boundary.
Soil-Adjusted Vegetation Index (SAVI) derived from 2019 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates two vegetation indices—Normalized Difference Vegetation Index (NDVI) and Soil Adjusted Vegetation Index (SAVI) from the National Agriculture Imagery Program (NAIP) remotely sensed imagery. The intent is to make remotely sensed variables and visualizations accessible to stakeholders and researchers studying the Phoenix metropolitan area. NDVI and SAVI are calculated from the 2019 NAIP imagery (1m resolution). This dataset extends the 2010, 2013, 2015, and 2017 NDVI and SAVI products derived from NAIP imagery (also 1m resolution). All images are cropped to the CAP study area boundary.
Land-cover mapping of the central Arizona region based on 2015 National Agriculture Imagery Program (NAIP) imagery
Detailed land-cover mapping is essential for a range of research issues addressed by sustainability science, especially for questions posed of urban areas, such as those of the Central Arizona-Phoenix Long-Term Ecological Research (CAP LTER) program. This project provides a 1-meter land-cover mapping of the CAP LTER study area (greater Phoenix metropolitan area and surrounding Sonoran desert). The mapping is generated primarily using 2015 National Agriculture Imagery Program (NAIP) four-band data, with auxiliary GIS data used to improve accuracy. Auxiliary data include the 2015 cadastral parcel data, the 2014 USGS LiDAR data (1-meter), the 2014 Microsoft/OpenStreetMap Building Footprint data, the 2015 Street TIGER/Line, and a previous (2010) NAIP-based land-cover map of the study area (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-cap&identifier=623). Among auxiliary data, building footprints and LiDAR data significantly improved the boundary detection of above-ground objects. Post-classification, manual editing was applied to minimize classification errors. As a result, the land-cover map achieves an overall accuracy of 94 per cent. The map contains eight land cover classes, including: (1) building, (2) asphalt, (3) bare soil and concrete, (4) tree and shrub, (5) grass, (6) water, (7) active cropland, and (8) fallow. When compared to the aforementioned, previous (2010) NAIP-based land-cover map for the study area, buildings and tree canopies are classified more accurately in this 2015 land-cover map.
Normalized Difference Vegetation Index (NDVI) derived from 2021 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates two vegetation indices —Normalized Difference Vegetation Index (NDVI) and Soil Adjusted Vegetation Index (SAVI)— from the National Agriculture Imagery Program (NAIP) remotely sensed imagery. The intent is to make remotely sensed variables and visualizations accessible to stakeholders and researchers studying the Phoenix metropolitan area. NDVI and SAVI are calculated from the 2021 NAIP imagery (1m resolution). This dataset extends the 2010, 2013, 2015, 2017, and 2019 NDVI and SAVI products derived from NAIP imagery (also 1m resolution). All images are cropped to the CAP LTER study area boundary of central Arizona, USA. The materials presented here include NDVI data with SAVI data presented in a companion dataset that is also available through the EDI.
Soil-Adjusted Vegetation Index (SAVI) derived from 2021 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates two vegetation indices —Normalized Difference Vegetation Index (NDVI) and Soil Adjusted Vegetation Index (SAVI)— from the National Agriculture Imagery Program (NAIP) remotely sensed imagery. The intent is to make remotely sensed variables and visualizations accessible to stakeholders and researchers studying the Phoenix metropolitan area. NDVI and SAVI are calculated from the 2021 NAIP imagery (1m resolution). This dataset extends the 2010, 2013, 2015, 2017, and 2019 NDVI and SAVI products derived from NAIP imagery (also 1m resolution). All images are cropped to the CAP LTER study area boundary of central Arizona, USA. The materials presented here include SAVI data with NDVI data presented in a companion dataset that is also available through the EDI.
Normalized Difference Vegetation Index (NDVI) derived from 2010 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Normalized Difference Vegetation Index (NDVI) from 2010 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as fifteen individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf, png, and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_NDVI_CAP2010-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf, png, and kml index map). Javascript code used to process NDVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Normalized Difference Vegetation Index (NDVI) derived from 2013 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Normalized Difference Vegetation Index (NDVI) from 2013 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as fifteen individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf, png, and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_NDVI_CAP2013-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf, png, and kml index map). Javascript code used to process NDVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Normalized Difference Vegetation Index (NDVI) derived from 2015 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Normalized Difference Vegetation Index (NDVI) from 2015 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as fifteen individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf, png, and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_NDVI_CAP2015-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf, png, and kml index map). Javascript code used to process NDVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Normalized Difference Vegetation Index (NDVI) derived from 2017 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Normalized Difference Vegetation Index (NDVI) from 2017 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as fifteen individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf, png, and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_NDVI_CAP2017-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf, png, and kml index map). Javascript code used to process NDVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Soil-Adjusted Vegetation Index (SAVI) derived from 2010 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Soil-adjusted Vegetation Index (SAVI) from 2010 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as multiple individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_SAVI_CAP2010-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf and kml index maps). Javascript code used to process SAVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Soil-Adjusted Vegetation Index (SAVI) derived from 2013 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Soil-adjusted Vegetation Index (SAVI) from 2013 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as multiple individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_SAVI_CAP2013-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf and kml index maps). Javascript code used to process SAVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Soil-Adjusted Vegetation Index (SAVI) derived from 2015 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Soil-adjusted Vegetation Index (SAVI) from 2015 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as multiple individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_SAVI_CAP2015-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf and kml index maps). Javascript code used to process SAVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Soil-Adjusted Vegetation Index (SAVI) derived from 2017 National Agriculture Imagery Program (NAIP) data for the central Arizona region
This project calculates the Soil-adjusted Vegetation Index (SAVI) from 2017 National Agriculture Imagery Program (NAIP) imagery (1-meter resolution) for the central Arizona region. Because of their large size, data (as GeoTIFF files) for each survey year are provided as multiple individual tiles each comprising a portion of the overall coverage area. An index of the relative position of each tile in the coverage area is provided as a pdf and kml where the tile index contains a portion of the GeoTIFF file name (e.g., the relative position of the data file NAIP_SAVI_CAP2017-0000000000-0000000000.tif to the overall coverage area is identified by the index id 0000000000-0000000000 in the pdf and kml index maps). Javascript code used to process SAVI values is included with this dataset. This data set is one in a series of NDVI and SAVI (Soil Adjusted Vegetation Index) data sets for the central Arizona region spanning multiple years (2010-2017). Related data are available through the Environmental Data Initiative - see resouce listing in the methods of this data set for references.
Gridded 1-hectare estimates of shrub community structure at the Jornada Basin LTER site derived from NAIP (2011) and LiDAR (2019) data
This dataset contains four raster maps of shrub community structure at the Jornada Basin LTER site in southern New Mexico U.S.A. These shrub structure estimates were created by combining an existing categorical shrub map (Ji et al. 2019) with USGS LiDAR shrub height estimates from 2019. The resulting raster dataset includes four bands of spatially aligned shrub volume, cover, height, and density estimates at one hectare resolution. Data are also included in tabular format, extracted from the 1 hectare grid upon which estimates were created. These shrub structure estimates are intended to facilitate analyses of habitat structure and community dynamics within the northern Chihuahuan Desert.
Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for CoastTrain/8-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for CoastTrain 8-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Residual-UNet model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:</p> <p>water<br> whitewater<br> sediment<br> other_bare_natural_terrain<br> marsh_vegetation<br> terrestrial_vegetation<br> agricultural<br> development</p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>References<br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. et al. A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. Sci Data 10, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p> <p> </p>
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/5-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/5-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Segformer model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:</p> <p>water<br> whitewater<br> sediment<br> other_bare_natural_terrain<br> other<br> </p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p> </p> <p><strong>References</strong><br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. et al. A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. Sci Data 10, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p> <p> </p>
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/8-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/8-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Segformer model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:</p> <p>water<br> whitewater<br> sediment<br> other_bare_natural_terrain<br> marsh_vegetation<br> terrestrial_vegetation<br> agricultural<br> development</p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p> </p> <p><strong>References</strong><br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. et al. A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. Sci Data 10, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p> <p> </p>
TLR priming licenses NAIP inflammasome activation by immunoevasive ligands
Open the record for dataset details and reuse information.
National Agriculture Imagery Program (NAIP) Orthoimagery from 2005, Niwot Ridge LTER Project Area, Colorado
This data set contains imagery from the National AgriculturalImagery Program (NAIP). NAIP acquires digital ortho imageryduring the agricultural growing seasons in the continental U.S..A primary goal of the NAIP program is to enable availabilty ofortho imagery within a year of acquisition. NAIP provides twomain products: 1 meter ground sample distance (GSD) orthoimagery rectified to a horizontal accuracy of within +/- 5meters of reference digital ortho quarter quads (DOQQS) fromthe National Digital Ortho Program (NDOP); and, 2 meter GSDortho imagery rectified to within +/- 10 meters of referenceDOQQs. The tiling format of NAIP imagery is based on a 3.75'x 3.75' quarter quadrangle with a 360 meter buffer on all foursides. NAIP quarter quads are rectified to the UTM coordinatesystem NAD83. NAIP imagery can obtain as much as 10% cloudcover per tile. NOTE: This EML metadata file does not contain important geospatial data processing information. Before using any NWT LTER geospatial data read the arcgis metadata XML file in either ISO or FGDC compliant format, using ArcGIS software (ArcCatalog > description), or by viewing the .xml file provided with the geospatial dataset.
Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for CoastTrain/5-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for CoastTrain 5-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Residual-UNet model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p><em>classes:</em></p> <ol> <li>water</li> <li>whitewater</li> <li>sediment</li> <li>other_bare_natural_terrain</li> <li>other_terrain</li> </ol> <p><em>File descriptions</em></p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p><em>References</em><br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. <em>et al.</em> A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. <em>Sci Data</em> <strong>10</strong>, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.