Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
68
datasets available to search
ShareScore release 0.9.0
Dataset results
68 results for “non-coding sequences”
Massive Chinese domestic pigs provide missing sequences in reference genome and reveal non-coding sequence variations regulating gene expression across Eurasian boars
<p>This dataset contains novel sequences in Chinese domestic pigs but is absent in Sscrofa 11.1 reference genome. The detailed information for each file is recorded in the README file.</p>
Identification of a novel non-coding deletion in Allan-Herndon-Dudley syndrome by long-read HiFi genome sequencing
<p>These are the VCF files of structural variant (SV) calls for two sibling patients (II:2 [GMPB009_1] and II:3 [GMPB009_4]) generated by PacBio HiFi long-read genome sequencing.</p> <p>Sequence reads were processed using the <a href="https://github.com/PacificBiosciences/pb-human-wgs-workflow-snakemake">PacBio Human WGS workflow</a> with the human reference genome (hg38), and SVs were identified using '<a href="https://github.com/PacificBiosciences/svpack">svpack</a>'.</p>
FIGURE 3 in Sansevieria (Asparagaceae, Nolinoideae) is a herbaceous clade within Dracaena: inference from non-coding plastid and nuclear DNA sequence data
FIGURE 3. Bayesian maximum clade reliability trees based on combined nuclear At103 and chloroplast rps16, trnL-F datasets for Dracaena, Sansevieria, and selected outgroups. The values above the branch represent the maximum parsimony bootstrap percentage (BS), and the ones below are the Bayesian posterior probability (PP). Bold branches indicate strong support, interpreted as ≥ 70 BS and ≥ 95 PP. Long branches were shortened by half their length (indicated by \\).
FIGURE 2 in Sansevieria (Asparagaceae, Nolinoideae) is a herbaceous clade within Dracaena: inference from non-coding plastid and nuclear DNA sequence data
FIGURE 2. Bayesian maximum clade credibility trees based on nuclear At103 (A) and chloroplast rps16, trnL-F (B) datasets for Dracaena and Sansevieria. Outgroups were trimmed from the Figure. The values above the branch represent the maximum parsimony bootstrap percentage (BS), and the ones below are the Bayesian posterior probability (PP). Bold branches indicate strong support, interpreted as ≥ 70 BS and ≥ 95 PP.
FIGURE 1 in Sansevieria (Asparagaceae, Nolinoideae) is a herbaceous clade within Dracaena: inference from non-coding plastid and nuclear DNA sequence data
FIGURE 1. Representative morphological diversity in the dracaenoid genera, Dracaena and Sansevieria. A, Dracaena draco subsp. draco, Spain, Canary Islands, Tenerife, Icod de los Vinos; B, D. konaensis, origin: USA, Hawai'i, Big Island, Kona coast, in cultivation at Kew (Acc. No. 2008-239); C, D. arborea, Gabon, Woleu-Ntem Rd, Mitzic to Njole; D, D. laxissima, São Tomé and Príncipe, São Nicolau; E, D. goldieana, origin: Gabon, in cultivation at Kew (Acc. No. 1990-2300); F, D. aubryana, Gabon, Woleu-Ntem Rd Mitzic to Njole; G, Sansevieria frequens, Kenya, Laikipia District, Ngare Ndare Farm (type locality); H, S. aethiopica, Namibia, 74 km from Windhoek, on road to Walvis Bay; I, S. fischeri, Kenya, Munda, 18.9 km NE of Mwatate on Taveta road; J, S. pinguicula, Kenya, by Kowi airstrip, north bank of Tiva Lugga; K, S. ascendens, Kenya, Coast Province, Kwale District, around base of Taru Hill (type locality); L, S. kirkii var. pulchra, in cultivation (private collection, Miami, FL). Photographs by A, L. Mucina; B, I. Willey; C, E–F, T.H.J. Damen; D, J.J.F.E. de Wilde; G-K, L. E. Newton; L, S. Zona.
Data from: The importance of being genomic: non-coding and coding sequences suggest different models of toxin multi-gene family evolution
Open the record for dataset details and reuse information.
Total RNA sequencing in multiple Sus Scrofa tissues reveals novel long non-coding RNAs functioning in skeletal muscle development
GEO Series GSE73763. Sus scrofa. 13 samples. Type: Expression profiling by high throughput sequencing.
sRNA sequencing to compare small non-coding RNA profiles of hepatocellular carcinoma cell lines Huh7, HepG2, and Hep3B against the normal liver cell HL7702
GEO Series GSE215349. Homo sapiens. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Non-coding small RNA profiling by high throughput sequencing of bovine primary retinal microvascular endothelial cells
GEO Series GSE31340. Bos taurus. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential.
GEO Series GSE178230. Mus musculus. 58 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Simultaneous sequencing of coding and non-coding RNA from APP/PS1 transgenic mice at 15-months
GEO Series GSE163878. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Dissecting long non-coding RNAs derived from microRNA genes in hematopoiesis (Illumina short-read sequencing)
GEO Series GSE180565. Homo sapiens. 61 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other.
Expression profile analysis of long non-coding RNAs in condyloma acuminatum in a Chinese female population by RNA-sequencing and bioinformatics
GEO Series GSE172140. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing; Other.
RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer
GEO Series GSE104178. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements
GEO Series GSE19371. Mus musculus. 12 samples. Type: Expression profiling by array.
Dissecting long non-coding RNAs derived from microRNA genes in hematopoiesis (scRNA sequencing)
GEO Series GSE181338. synthetic construct; Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Other.
Simultaneous detection and relative quantification of coding and non-coding RNA using a single sequencing reaction
GEO Series GSE99065. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles
GEO Series GSE68559. Homo sapiens. 98 samples. Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Genome-wide identification of Drought-responsive Regulatory Coding and Non-coding Transcripts from Oryza sativa L. by deep RNA sequencing
GEO Series GSE74465. Oryza sativa Indica Group. 27 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Transcriptome sequencing of a large human family identifies the impact of rare non-coding variants
GEO Series GSE56961. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.