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37
datasets available to search
ShareScore release 0.9.0
Dataset results
37 results for “non-coding variants”
Data accompanying MetaChrom and "Annotating functional effects of non-coding variants in neuropsychiatric cell types by Deep Transfer Learning"
<p>This is the data accompanying the paper " Annotating functional effects of non-coding variants in neuropsychiatric cell types by Deep Transfer Learning" and the GitHub repository https://github.com/bl-2633/MetaChrom. </p> <p><strong>/data/bed_files/ </strong>contains the unprocessed bed file used in analysis</p> <p><strong>/data/seq_data/</strong> contains processed data from the bed files with corresponding partition and labels for each sequence segment.</p> <p><strong>/trained_model/MetaChrom_model/</strong> contains the pre-trained MetaChrom model on neural developmental context</p> <p><strong>/trained_models/MetaFeat_model/ </strong>contains the MetaFeat model used in training</p> <p><strong>/tool/</strong> contains files and software necessary for the processing pipeline.</p>
Functional dissection of human cardiac enhancers and non-coding de novo variants in congenital heart disease
<p>This is the CHD MPRA motif analysis input file. Please see the detail in : https://github.com/pulab/CHD_DNVs/tree/main/MPRA-Enhancer/CHD_MPRA_project/CHD_MPRA_library</p>
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits
GEO Series GSE136703. Homo sapiens; unidentified plasmid. 210 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Non-coding variants alter Gata2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis
GEO Series GSE223274. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases [RNA-seq]
GEO Series GSE185908. Homo sapiens. 120 samples. Type: Expression profiling by high throughput sequencing.
Identification of functional non-coding variants associated with orofacial cleft [MPRA]
GEO Series GSE297145. Homo sapiens. 8 samples. Type: Other.
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [MPRA]
GEO Series GSE136702. Homo sapiens; unidentified plasmid. 33 samples. Type: Other.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases [STARR-seq]
GEO Series GSE185939. Homo sapiens. 16 samples. Type: Other.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases
GEO Series GSE185941. Homo sapiens. 146 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases [ChIP-seq]
GEO Series GSE185928. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A functional genomics atlas enhanced by convolutional neural networks facilitates clinical interpretation of disease relevant variants in non-coding regulatory elements [ATAC-seq]
GEO Series GSE263338. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptome sequencing of a large human family identifies the impact of rare non-coding variants
GEO Series GSE56961. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
A functional genomics atlas enhanced by convolutional neural networks facilitates clinical interpretation of disease relevant variants in non-coding regulatory elements [ChIP-seq]
GEO Series GSE263337. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [CRISPR guide-seq]
GEO Series GSE136693. Homo sapiens. 168 samples. Type: Other.
A functional genomics atlas enhanced by convolutional neural networks facilitates clinical interpretation of disease relevant variants in non-coding regulatory elements [wt RNA-seq]
GEO Series GSE267549. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases [HiChIP]
GEO Series GSE189453. Homo sapiens. 2 samples. Type: Other.
A functional genomics atlas enhanced by convolutional neural networks facilitates clinical interpretation of disease relevant variants in non-coding regulatory elements [STARR-RNA-seq]
GEO Series GSE263335. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Small non-coding differentially-methylated copy-number variants, involving lncRNAs, cause a lethal lung developmental disorder
GEO Series GSE39258. Homo sapiens. 14 samples. Type: Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array; Other.
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [ATAC-seq]
GEO Series GSE136686. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification and Characterization of Novel Non-Coding Variants That Contribute to Genetic Disorders
ClinicalTrials.gov study NCT04399694. IPD Sharing: YES. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.