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6 results for “nrLSU”
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
FIGURE 2. The nrLSU-RPB2 in A new species, Russula luteolamellata (Russulaceae, Russulales) from China
FIGURE 2. The nrLSU-RPB2-mtSSU multi-loci phylogenetic tree obtained from the Bayesian analysis. Numbers above branches are Bayesian Posterior Probability (pp) values and Maximum Likelihood Bootstrap (MLB). Numbers above branches represent strong, and moderate support (pp≥0.95 and/or MLB≥50%). The red font indicates the position of newly obtained sequences. The GenBank accession number for the sequence information used is indicated in Table 1.
FIGURE 4. A combined nrLSU and RPB2 in A new species of Inocybe representing the Nothocybe lineage
FIGURE 4. A combined nrLSU and RPB2-sequence based phylogram generated from ML analysis showing the placement of Inocybe distincta within the Nothocybe clade. Except the Mallocybella clade, which was proposed as the genus Tubariomyces by Alvarado et al. (2010), all other clade nomenclature follows Matheny et al. (2009). Values at nodes indicate bootstrap support. BS values ≥50% are shown.
FIGURE 1. The nrLSU-rpb2 in A new species of Russula subgenus Russula (Russulaceae, Russulales) from Yanshan Mountains, North China
FIGURE 1. The nrLSU-rpb2-mtSSU-tef1α multi-locus phylogenetic tree obtained from Bayesian analysis. Numbers above branches represent strong support (pp≥0.95 or MLB≥50 %). Numbers above branches are Bayesian Posterior Probability (PP) values and Maximum Likelihood Bootstrap (MLB). The red font indicates the position of the new sequences. See Table 1 for sequence data. Asterisks (*) denotes branches with PP = 1.00, MLB = 100 %.
ITS and nrLSU DNA sequence data from four species of Coreomyces (Laboulbeniomycetes)
<p>The genus <i>Coreomyces</i> (Laboulbeniaceae, Laboulbeniomycetes, Ascomycota) includes minute parasites on water boatmen (Corixidae, Hemiptera, Insecta). This taxonomic study is primarily based on freshly sampled corixids infected by <i>Coreomyces</i> from Sweden, although a few samples from Denmark and Turkey were also included. All records were verified using DNA sequence data from the internal transcribed spacer region and large subunit of the nuclear ribosomal DNA repeat region. We recognise four species, two of which are new to science: <i>Coreomyces confusus</i> H. Sundb. et al. sp. nov., <i>C. dextrorsus</i> H. Sundb. et al. sp. nov., <i>C. macropus</i> Thaxt., and <i>C. corixae</i> Thaxt. <i>C. corixae</i> is a new record for Denmark, Sweden, and Turkey, while <i>C. macropus</i> is a new record for Denmark and Sweden. All four species can inhabit two different yet distinct positions on the host. We observe that morphology is affected by the position on the host and that different species sharing the same position on the host tend to be difficult or impossible to separate on morphology only. We conclude that species circumscriptions in <i>Coreomyces</i> must be based on the integration of molecular and morphological data.</p>
ITS and nrLSU DNA sequence data from four species of Coreomyces (Laboulbeniomycetes)
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