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6 results for “oligophagy”
Figure 6 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 6. Secondary structure models of the highly variable proximal part of helix 43 (S6, Fig. 1) in Zygaeninae. All structures are based on thermodynamic folding by minimizing the free energy and have been calculated considering the entire nucleotide sequence of helix 43. The change in the Gibb's free energy (dG) refers to the S6 structure only. Applied ambiguity code: G/A = R, C/U = Y.
Figure 3 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 3. Consensus structure and base pair probability matrix of helix E23-5 (S3, Fig. 1) in Lepidoptera. Nucleotides in circles indicate consistent and/or compensatory substitutions. The size of squares in the grid is proportional to the probability of a base pairing. Note that the species Z. centaureae, Z. laeta and Z. huguenini have been omitted from this analysis because of their deviating secondary structure (compare with Fig. 4).
Figure 2 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 2. Distribution of pairwise tree edit distances between highly variable SSU rRNA secondary structure areas (S1–S6, Fig. 1) of Zygaenoidea excluding taxa of the subgenus Mesembrynus (top) and of Zygaena species belonging to the subgenus Mesembrynus only (bottom). The extreme values in the Zygaenoidea tree edit distance distribution on the right all involve Z. excelsa, a species showing a highly derived secondary structure in the area S6 (compare with Fig. 6).
Figure 1 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 1. Secondary structure model of the SSU (18S) rRNA gene sequence of Zygaena (Mesembrynus) sarpedon lusitanica Reiss, 1936 (Lepidoptera: Zygaenidae; accession no. AJ830858) and structure variation in the helices E10-1 and E23-12 among species of the subfamily Zygaeninae. Nucleotides in the model are continuously numbered beginning at the 5′-end of the molecule; tick marks identify every tenth base. Light shading indicate helices numbered according to Wuyts et al. (2002). S1–S6 (dark shades) denote areas with variable secondary structure in the subfamily Zygaeninae. Roman numerals specify the domains I, II, III and IV. The following ambiguity code has been applied: A/C = M, C/U = Y, G/A = R.
Figure 7 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 7. Neighbour-joining tree based on structural differences in the variable areas S1–S6 (compare with Fig. 1) of the small-subunit (18S) rRNA in taxa of the genus Zygaena. The topology is rooted with Reissita simonyi and Epizygaenella caschmirensis as outgroup. Taxa of the subgenus Mesembrynus are indicated by shading. Numbers in parentheses specify the number of species in a particular group.
Figure 5 in Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
Figure 5. Consensus structure and base pair probability matrix of the proximal part of helix 43 (S6, Fig. 1) in Lepidoptera. Nucleotides in circles indicate consistent and/or compensatory substitutions. The size of squares in the grid is proportional to the probability of a base pairing. Note that the unpaired nucleotides C and G in the helix will most likely bind in individual structures having this specific nucleotide combination, but non-Watson–Crick pairings are too frequent in the alignment for assuming a generally nucleotide interaction at this position in the consensus structure.
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OpenNeuro
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