Find research datasets worth reusing

opencc-by-4.0Mar 2022View details →

Dataset supporting the paper "Power discontinuity and shift of the energy onset of a molecular de-bromination reaction induced by hot-electron tunneling. Nanoscale 13, 15215 (2021)"

Dataset corresponding to theoretical calculations in the paper "Power discontinuity and shift of the energy onset of a molecular de-bromination reaction induced by hot-electron tunneling. Nanoscale 13, 15215 (2021)". DOI: <a href="https://doi.org/10.1039/D1NR04229G">10.1039/D1NR04229G</a> List of files: Several folders corresponding to the figures of the paper. They contain: <ul> <li>CONTCAR files: relaxed structures in VASP format. They can be visualized with VESTA (<a href="https://jp-minerals.org/vesta/en/">https://jp-minerals.org/vesta/en/</a>).</li> <li>.agr: grace files (<a href="https://plasma-gate.weizmann.ac.il/Grace/">https://plasma-gate.weizmann.ac.il/Grace/</a>).  </li> </ul>

opencc-by-4.0Jul 2022View details →

Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022.

Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022. These data were used to estimate the time-varying reproduction number (R) in South Africa, as described in https://www.medrxiv.org/content/10.1101/2022.07.22.22277932v1.full.

opencc-by-4.0Jul 2022View details →

Dialexical set of Proto-Tai simple onsets

A dialexical set for the study of variation and sound change in the simple onsets of Proto-Tai. Includes columns for the proto-onset, reconstructed form from Pittayaporn (2009), the posited Proto-Tai gloss, the standard Thai reflex in Thai script (if one exists), the cognate ID number from Pittayaporn's reconstructions, and the matching cognate ID number from Hudak (2008), which compiles Gedney's field data (if a match exists).

opencc-by-4.0May 2024View details →

Time Series data from wearable sensors to capture the onset of Fatigue in Runners

The data captured came from mounting a single Shimmer3 IMU on the lumbar of 19 recreational runners. The participants were all regular runners and injury free. The study protocol was reviewed and approved by the human research ethics committee at University College Dublin. The data was collected in three segments; in the first, the participant completed a 400m run at a comfortable pace; the second segment consisted of a beep test which acted as the fatiguing protocol for this study; and the last segment where the runner was required to complete the 400m run at their comfortable pace, this time in their fatigued state. The beep test requires the runner to continuously run between two points 20m apart following an audio which produces `beeps' indicating when the person should begin running from one end to the other. The test eventually requires the runner to increase their pace as the interval between the `beeps' reduces as the test progresses. The fatiguing protocol ends when the runner is unable to keep up the increase in pace. The runs were all done on an outdoor running track. The sensor captured acceleration, angular velocity and magnetometer data throughout the three stages of the trials at a sampling rate of 256Hz. The data included here consists of the raw readings from the sensors across the three phases of the run. The data is saved seperately as 'F' for Fatigued, 'NF' for Not Fatigued, and 'BeepTest' for the data collected during the fatiguing process. For the processed and labelled fatigue and non fatigue data, see: https://zenodo.org/records/7997851 Kindly cite one of the following papers when using this data: B. Kathirgamanathan, B. Caulfield and P. Cunningham, "Towards Globalised Models for Exercise Classification using Inertial Measurement Units," 2023 IEEE 19th International Conference on Body Sensor Networks (BSN), Boston, MA, USA, 2023, pp. 1–4, doi: 10.1109/BSN58485.2023.10331612 B. Kathirgamanathan, T. Nguyen, G. Ifrim, B. Caulfield, P. Cunningham. Explaining Fatigue in Runners using Time Series Analysis on Wearable Sensor Data, XKDD 2023: 5th International Workshop on eXplainable Knowledge Discovery in Data Mining, ECML PKDD, 2023, <a href="http://xkdd2023.isti.cnr.it/papers/223.pdf">http://xkdd2023.isti.cnr.it/papers/223.pdf</a>

opencc-by-4.0May 2024View details →

Quantifying the basic reproduction number and the under-estimated fraction of mpox cases around the world at the onset of the outbreak: a mathematical modeling and machine learning- based study

In 2022, there was a global resurgence of mpox, with different clinico-epidemiological features compared with previous outbreaks. During this resurgence, sexual contact was hypothesized as the primary transmission route, with the community of men having sex with men (MSM) being disproportionately affected. Because of the stigma associated with sexually transmitted infections, especially those impacting MSM, the real burden of mpox could be masked. We quantified the basic reproduction number (R0) and the under-estimated fraction of mpox cases in 16 countries, from the onset of the outbreak until early September 2022, using Bayesian inference and a compartmentalized, risk-structured (high- and low-risk populations), two-route (sexual and non-sexual transmission) mathematical model. Machine learning (ML) was leveraged to identify under-estimation determinants. Estimated R0 ranged between 1·37 (Canada) and 3·68 (Germany). The under-estimation rates for the high- and low-risk populations varied between 25-93% and 65-85%, respectively. The estimated total number of mpox cases, relative to the reported cases, is highest in Colombia (3·60) and lowest in Canada (1·08). In the ML analysis, two clusters of countries could be identified, differing in terms of attitudes towards the 2SLGBTQIAP+ community and importance of religion. Given the substantial mpox under-estimation, surveillance should be enhanced and campaigns against the stigmatization of MSM should be organized. Countries have different social characteristics, potentially explaining the various degrees of under- reporting in mpox cases, which should be considered by studies assessing the effectiveness of community-based interventions.

opencc-by-4.0Nov 2018View details →

Device Performance Metrics as Function of Absorption Onset

Updated database and overview plot based on previously published version in J. Mater. Chem. A, 2017, 5, 11401 (Unger et al.)

opencc-by-4.0Nov 2019View details →

Incidences of community onset severe sepsis, Sepsis-3 sepsis, and bacteremia in Sweden – a prospective population-based study.

Sepsis epidemiology study 2011-2012 Sweden Ljungström, Lars; Andersson, Rune; Jacobsson, Gunnar   Data collected during the prospective "Sepsis Skaraborg study" performed 2011-2012 in the western region of Sweden. Adult patients admitted to the emergency department for suspicion of a community-onset sepsis were evaluated. The study was approved by the Regional Ethical Review Board of Gothenburg (376-11). The file includes data for patient characteristics, vital signs, biomarker measurements, cases of bacteremia, and patient classifications using Sepsis-2 and Sepsis-3 criteria.

opencc-by-4.0Mar 2023View details →

Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"

Diel regulation of protein levels and protein modification had been less studied than transcript rhythms. These data tables in .XLSX format report partial proteome (Table_S1) and phosphoproteome data (Table_S2), assayed using shotgun mass-spectrometry, from cultures of the alga Ostreococcus tauri under light-dark cycles, sampled at Zeitgeber times (ZT, hours) 0, 4, 8, 12, 16 and 20. 10% of quantified proteins but two-thirds of phosphoproteins were rhythmic. Gene Ontology enrichment analysis was applied to infer the functional enrichment of the proteins or phosphoproteins, grouped by their loadings in PCA analysis (Table_S3), by hierarchical clustering (Table_S4) or by the peak time of their rhythmic profile (Table_S5).Prompted by night-peaking and apparently dark-stable proteins, we also tested the proteome of cultures transferred to prolonged darkness for 24, 48, 72 or 96h (Table_S6), where the proteome changed less than under the diel cycle. The raw data are available from ProteomeXchange, with identifiers PXD001734, PXD001735 and PXD002909.

opencc-by-4.0Jun 2023View details →

Datasets used in the study "Trends in medication use after the onset of the COVID-19 pandemic in the Republic of Ireland: an interrupted time series study"

This record contains datasets analysed as part of the study "Trends in medication use after the onset of the COVID-19 pandemic in the Republic of Ireland: an interrupted time series study". Two datasets were used, one relating to therapeutic subgroups defined by ATC codes (atc_wide_freq_avg.csv) and one relating to individual medications (drugs_wide_freq_avg.csv). Datasets were collated by combining monthly data reported by HSE Primary Care Reimbursement Services in Ireland relating to dispensing on the General Medical Services scheme at https://www.sspcrs.ie/portal/annual-reporting/ Code used to collate datasets and for data management is included in Stata format (compile_data_export_for_analysis_final.do). The study protocol is available at https://doi.org/10.17605/OSF.IO/B4RTM

opencc-by-4.0Mar 2024View details →

Supplementary AIA Movies for the Solar Flares described in "Investigating the Soft X-ray Spectra of Solar Flare Onsets"

This repository contains flare movies of six solar flares described in the paper "Investigating the Soft X-ray Spectra of Solar Flare Onsets". For each flare both the standard AIA 193 Angstrom Solar Dynamics Observatory (SDO) Atmospheric Imager (AIA) Assembly Extreme Ultra-Violet (EUV) image animations, as well as the running difference animations are included. The format of the file names for the AIA 193 Angstrom images is ‘DOY_NNN_Col.mp4’, where NNN is denotes the Day of Year (for e.g., DOY_065_Col.mp4) and the suffix ‘Col’ denotes ‘Colored’. Similarly the format of the file names for the difference images is ‘DOY_NNN_Diff.mp4’ where the suffix ‘Diff’ denotes ‘Difference Image’. The timestamp of each image in the animations is also shown on the top of the image. The SDO-AIA images are courtesy of NASA/SDO and the AIA and HMI science teams, and have been accessed from <a href="http://jsoc.stanford.edu/">http://jsoc.stanford.edu/</a>.

opencc-by-4.0Jul 2024View details →

Data: Constraining Ice Slab Thickness at the Onset of Visible Surface Runoff from the Greenland Ice Sheet

<h1>Data repository associated with the manuscript 'Constraining Ice Slab Thickness at the Onset of Visible Surface Runoff from the Greenland Ice Sheet', Nicolas Jullien, Andrew J. Tedstone, Horst Machguth, (under review in the Journal of Glaciology)</h1> <h2> </h2> <h2>Introduction:</h2> We provide a short description of each file present in this data repository, and flag to the corresponding reference when applicable. Please cite the appropriate references when using these data. <h2> </h2> <h2>Data:</h2> <h3>In this repository:</h3> <ul> <li>'Ice_Layer_Output_Thicknesses_Likelihood_2010_2018_jullienetal2021_modified.csv'. Modified 2010-2018 ice slabs thickness retrievals from Jullien et al., (2023) where ice slabs thickness > 16 m thick and < 1 m thick are retained, and flight-lines not holding ice slab were set to hold an ice content of 0 m thick.</li> <li>'master_maps.zip'. Raster files. Surface hydrology connectivity map over the Greeland Ice sheet, first presented in Tedstone and Machguth (2022). The easiest way to handle this dataset is to use the 'master_map_GrIS_mean.vrt' file.</li> <li>'MARv.3.14_MoA_2000_2012.nc'. Melt over accumulation from 2000 to 2012 extracted from MARv3.14. See file '<a title="melt_over_accumulation_calculations.py" href="https://github.com/jullienn/IceSlabs_SurfaceRunoff/blob/main/melt_over_accumulation_calculations.py">melt_over_accumulation_calculations.py</a>' in the code repository for post processing analysis.</li> <li>'RunoffLimits.zip'. '.csv' files. Maximum visible runoff limits in 2012 and 2019, sorted for each boxes generated by Tedstone and Machguth (2022). Each '.csv' file stores the data points coordinates (Geographical Reference System: WGS 84 / NSIDC Sea Ice Polar Stereographic North (EPSG:3413)) of the maximum visible runoff limit retrievals after filtering out the outliers. The maximum visible runoff limits where first presented in Tedstone and Machguth (2022).</li> </ul> <h3>Used in this study but from other datasets:</h3> <ul> <li>The ice slabs extent and ice slabs thickness were first presented in Jullien et al., (2023), and are accessible at: https://zenodo.org/records/7505426</li> <li>The radargrams displayed in Fig. 5c-f were first presented in Jullien et al., (2023), and are accessible at: https://zenodo.org/records/7505426. The following files were used: <ul> <li>'L1_may12_03_1_aggregated.pickle'</li> <li>'L1_may12_03_2_aggregated.pickle'</li> <li>'20100508_01_114_115_Depth_CORRECTED.pickle'</li> <li>'20140424_01_002_004_Depth_CORRECTED.pickle'</li> <li>'20180427_01_170_172_Depth_CORRECTED.pickle'</li> </ul> </li> <li>The surface topography present in Fig. 5g are 10 m resolution mosaics from the ArcticDEMv3 (Porter et al., 2018), and accessible at: https://data.pgc.umn.edu/elev/dem/setsm/ArcticDEM/mosaic/v3.0/</li> <li>The winter time strain rates map displayed in Fig. 5h were first presented in Poinar and Andrews (2021), and are accessible at: https://ubir.buffalo.edu/xmlui/handle/10477/82127</li> </ul>   <h2>References:</h2> Jullien, N., Tedstone, A. J., Machguth, H., Karlsson, N. B., & Helm, V. (2023). Greenland Ice Sheet Ice Slab Expansion and Thickening. Geophysical Research Letters, 50(10), e2022GL100911. https://doi.org/10.1029/2022GL100911 Poinar, K., & Andrews, L. C. (2021). Challenges in predicting Greenland supraglacial lake drainages at the regional scale. The Cryosphere, 15(3), 1455–1483. https://doi.org/10.5194/tc-15-1455-2021 Porter, C., Morin, P., Howat, I., Noh, M.-J., Bates, B., Peterman, K., Keesey, S., Schlenk, M., Gardiner, J., Tomko, K., Willis, M., Kelleher, C., Cloutier, M., Husby, E., Foga, S., Nakamura, H., Platson, M., Wethington, M., Jr., Williamson, C., … Bojesen, M. (2018). ArcticDEM, Version 3 (Version V1) [dataset]. Harvard Dataverse. https://doi.org/10.7910/DVN/OHHUKH Tedstone, A. J., & Machguth, H. (2022). Increasing surface runoff from Greenland’s firn areas. Nature Climate Change. https://doi.org/10.1038/s41558-022-01371-z

opencc-by-4.0Mar 2022View details →

Dataset Related to article "NEURODEVELOPMENTAL DISORDER AND LATE-ONSET DEGENERATIVE PARKINSONISM IN A PATIENT WITH A WDR45 DEFECT"

NGS data (.vcf; .bam; .bam.bai; .csv; .fastq) of patient analysed and sanger sequencing (.abi) for confirm the mutation.

opencc-by-4.0Apr 2022View details →

Sample labialized onsets in Shiguzi Rma (Qiang)

This is a short video file of Bumtsi, a native speaker of Shiguzi Rma (Qiang) (ISO code: cng) saying the words 'water' and 'bridge' in her mother tongue. The purpose of this recording is to illustrate the labialized onsets for both these forms.

opencc-by-4.0Mar 2022View details →

Prosociality as response to slow- and fast-onset climate hazards

This repository contains the information videos used in the treatments, as well as the data and code that replicates tables and figures for the following paper: Title: Prosociality as response to slow- and fast-onset climate hazards Authors: Ivo Steimanis1 & Björn Vollan1,* Affiliations: 1 Department of Economics, Philipps University Marburg, 35032 Marburg, Germany *Correspondence to: Björn Vollan <a href="mailto:bjoern.vollan@wiwi.uni-marburg.de">bjoern.vollan@wiwi.uni-marburg.de</a> ORCID: Steimanis: 0000-0002-8550-4675; Vollan: 0000-0002-5592-4185 Classification: Social Sciences, Economic Sciences Keywords: climate hazards, prosociality, in-group favoritism, antisociality

opencc-by-4.0Sep 2022View details →

IDENTIFYING AND MITIGATING CONGESTION ONSET (Project J3)

These data were used in the Sacramento and Tampa case studies as described in the final report of the STRIDE J3 project.

opencc-by-4.0Oct 2022View details →

Pre-processed ex vivo MRI data for manuscript titled "Neuroanatomical and cognitive biomarkers of alpha-synuclein propagation in a mouse model of synucleinopathy prior to onset of motor symptoms""

Repository for ex vivo magnetic resonance imaging data from the project titled "Presymptomatic neuroanatomical and cognitive biomarkers of alpha-synuclein propagation in a mouse model of synucleinopathy" Contains the pre-processed ex vivo T1-weighted images (Bruker 7T; 70 micron isotropic voxel resolution) for M83 alpha-synuclein A53T hemizygous mice that received either a phosphate buffered saline (PBS) or alpha-synuclein pre-formed fibrils (PFF) injection in the right dorsal striatum. Full subject list can be viewed with the "subject_list.csv" file. More details are available in the manuscript.

FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians

FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in ventral aspect. 1. Vertebrae 23,24,25, anterior end, to right. Scale bar, 5 cm. 2. Enlargement of osteophytic bridging between vertebrae 23-24, 24- 25. Abbreviations: ns, neural spine; cr, cervical rib. Scale bar equals 5 cm.

FIGURE 2 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians

FIGURE 2. Pathological cervical vertebra from Colymbosaurus megadeirus (CAMSM J63919) in 1. anterior view 2. right lateral view 3. ventral view. 4. Left lateral view of pathological vertebrae in series, museum numbers CAMSM J63919 v, w, x, aa; estimated positions in cervical series 26 to 29. 5. Plesiosauroid (indet) (GPIT.RE.03173) terminal cervical and first pectoral in left lateral view and 6. right lateral view. Abbreviations: cv, cervical vertebra; pv, first pectoral vertebra; ve, pathological ventral expansions. Scale bar equals 3 cm.

FIGURE 5. 1 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians

FIGURE 5. 1. General diagram of spondylosis deformans grades (based on Kranenberg et al., 2012) 2. Schematic diagram of plesiosaur cervical vertebrae showing spondylosis deformans grades. Grade 0: no enthesophytes. Grade 1: small enthesophyte at the edge of the epiphysis, not extending past the end plate. Grade 2: enthesophyte extending beyond the end plate but not connecting to enthesophyte on adjacent vertebra. Grade 3: enthesophytes on adjacent vertebrae connected forming bony bridges between vertebrae. 3. Reproduction of radiographic images of spondylosis deformans grades in a dog, for comparison. https://veteriankey.com/spondylosis-deformans/

FIGURE 1. Fused cervical vertebrae 12 and 13 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians

FIGURE 1. Fused cervical vertebrae 12 and 13 in juvenile Muraenosaurus sp. (NWM 19.96.G17) in 1. ventral 2. left lateral 3. right lateral and 4. dorsal view. 5. Ventral view of vertebral series (numbered), showing abnormal position of ventral foramina in vertebrae 10 and 11, and symmetrical positioning in 14, 15. 6. Reconstruction of Muraenosaurus (from Andrews, 1910) showing position of vertebral fusion. Abbreviations: for, foramina subcentralia; naf, neural arch facets. Scale bar equals 4 cm.