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22 results for “orthologue”
Fig. 4. Maximum Likelihood phylogenetic tree generated using N in The African buffalo parasite Theileria. sp. (buffalo) can infect and immortalize cattle leukocytes and encodes divergent orthologues of Theileria parva antigen genes
Fig. 4. Maximum Likelihood phylogenetic tree generated using N-terminal sequences of T. sp. (buffalo) and T. parva PIM antigen genes. Maximum composite likelihood trees were constructed using 1000 bootstrap replicates as implemented in MEGA5; the optimal nucleotide substitution model was identified using data monkey. The tree constructed with RAxML (Stamatakis et al., 2014) using a GTR/G/I model with 100 bootstrap iterations.
Fig. 5 in The African buffalo parasite Theileria. sp. (buffalo) can infect and immortalize cattle leukocytes and encodes divergent orthologues of Theileria parva antigen genes
Fig. 5. Maximum Likelihood Phylogenetic trees illustrating the genetic relationships of T. parva CD8 T target antigen gene orthologues from T. sp. (buffalo). Panel (A) Tp6; Panel B Tp7: Panel C Tp8. Sequences were aligned and used to construct a maximum likelihood tree, at which the nodes were confirmed using 1000 bootstrap replications. The bootstrap values indicating the degree of support for each node are shown and also the GenBank accession numbers of the sequences. For Tp6, the tree was rooted using the prohibitin gene sequences present in Babesia bovis (XM001609045) and Theileria orientalis (AB161472). For Tp7, the tree was rooted using the putative Heat shock protein 90 gene sequences from Toxoplasma gondii (AY344115), Babesia bovis (AK442026) and Theileria annulata (XM_947380). For Tp8, the tree was rooted using an orthologue of Tp8 found in Theileria equi (CP001669).
Fig. 3 in The African buffalo parasite Theileria. sp. (buffalo) can infect and immortalize cattle leukocytes and encodes divergent orthologues of Theileria parva antigen genes
Fig. 3. PCR amplification of genes encoding Theileria parva antigens from Marula schizont-infected leukocyte cultures. Panel A, p104 primers; Panel B PIM, primers; Panel C p67 primers. The order of the schizont-infected lymphocyte samples is (1) N6; (2). N13; (3). N18; (4). N20; (5). N33; (6). N36; (7). N38; (8). N43; (9). N50; (10). N55; (11). N69; (12). N76; (13). N77, (14). N79; (15). N86, (16). N88; (17). N99; (18). N100; (19). N102; (20). N103; (21). N106; (22). N107.
Fig. 2 in The African buffalo parasite Theileria. sp. (buffalo) can infect and immortalize cattle leukocytes and encodes divergent orthologues of Theileria parva antigen genes
Fig. 2. Results of a semi-nested PCR assay used to amplify 18S ribosomal subunit DNA using primers specific for T. parva and T. sp. (buffalo). Samples are as follows: 1)N13 2)N18 3) N20 4)N33 5)N36 6) N43 7)N50 8)N55 9) N69 10)N76 11) N79 12) N86 13) N88 14) N99 15)N100 16) N102 17) N103 18)N107 19—21) T. parva clones 22—24) T. sp. (buffalo) clones (documented in Table 2).
Fig. 1 in The African buffalo parasite Theileria. sp. (buffalo) can infect and immortalize cattle leukocytes and encodes divergent orthologues of Theileria parva antigen genes
Fig. 1. Reverse line blot analysis of schizont cultures containing parasites isolated from Marula farm. The following species-specific oligonucleotide probes were used (a) T. annulata, (b) T. parva, (c) T. mutans, (d) T. velifera, (e) T. taurotragi, (f) T. buffeli, (g) T. sp. (buffalo). (h) B. bigemina, (i) B. bovis. The order of the experimental samples hybridized is DNA from cell culture isolates in lanes 1—22 was lane 1; (1) N6, (2) N13, (3) N18, (4) N20, (5) N33, (6) N36, (7) N38 (8) N43, (9) N50 (10) N55, (11) N69, (12) N76, (13) N77, (14) N79, (15) N88, (16) N99, (17) N100 (18) N103, (19) N106, (20) N107, (21) N86, (22) N102 and DNA extracted from whole cattle blood (23) N106 (24) N69 (25) N86.
Data from: Analysis of the PEBP gene family and identification of a novel FLOWERING LOCUS T orthologue in sugarcane
<p>Sugarcane (<i>Saccharum</i> spp.) is an important economic crop for both sugar and biomass, the yields of which are negatively affected by flowering. The molecular mechanisms controlling flowering in sugarcane are nevertheless poorly understood. RNA-seq data analysis and database searches have enabled a comprehensive description of the PEBP gene family in sugarcane. It is shown to consist of at least 13 <i>FLOWERING LOCUS T </i>(<i>FT</i>)-like genes, two <i>MOTHER OF FT AND TFL </i>(<i>MFT</i>)<i>-</i>like genes, and four <i>TERMINAL FLOWER </i>(<i>TFL</i>)-like genes. As expected, these genes all show very high homology to their corresponding genes in <i>Sorghum</i>, and also to <i>FT</i>-like, <i>MFT-</i>like, and <i>TFL</i>-like genes in maize, rice, and Arabidopsis. Functional analysis in Arabidopsis showed that the sugarcane <i>ScFT3</i> gene can rescue the late flowering phenotype of the Arabidopsis <i>ft-10</i> mutant, whereas <i>ScFT5</i> cannot. High expression levels of <i>ScFT3</i> in leaves of short day-induced sugarcane plants coincided with initial stages of floral induction in the shoot apical meristem as shown by histological analysis of meristem dissections. This suggests that <i>ScFT3</i> is likely to play a role in floral induction in sugarcane; however, other sugarcane <i>FT</i>-like genes may also be involved in the flowering process.</p>
Three haplotype-resolved pentaploid Rosa assemblies with assembled and extracted single copy orthologue (SCO) sequences from Rosa canina genome, diploid Rosa species, and sect. Caninae pollen
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Data from: Analysis of the PEBP gene family and identification of a novel FLOWERING LOCUS T orthologue in sugarcane
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Structural insights into trypanosomatid Mnk kinase orthologues (kMnks) suggest altered mechanism in the kinase domain
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Supplementary Structural Models (SARS-CoV-2 Spike-RBD:ACE2 complex and TMPRSS2) - SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals
<p>Structural Models (PDB) of SARS-CoV-2 Spike RBD bound to ACE2 receptors of 215 animals.</p> <p>Structural model of Human TMPRSS2.</p> <p>Modelled using the FunMod pipeline and referenced in the preprint</p> <p><a href="https://www.biorxiv.org/content/10.1101/2020.05.01.072371v5">SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals</a></p> <p> </p>
The orthologue of the RNA chaperone Hfq is essential for cell motility of the cyanobacterium Synechocystis PCC 6803
GEO Series GSE10708. Synechocystis sp. PCC 6803. 8 samples. Type: Expression profiling by array.
Transcriptome analysis of N140fs and T141_L142delinsMISLISV mutations in the zebrafish orthologue of the Alzheimer's disease gene PSEN2
GEO Series GSE158233. Danio rerio. 30 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome profiling of murine cardiomyocytes after treatment with recombinant murine Leukemia inhibitory factor (mLIF), murine Oncostatin M (mOSM) and human-like Oncostatin M orthologue (hlOSM).
GEO Series GSE185305. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The Arabis alpina APETALA2 orthologue delays flowering by repressing floral meristem identity genes during vernalization
GEO Series GSE117977. Arabis alpina. 9 samples. Type: Expression profiling by high throughput sequencing.
Porphyromonas gingivalis 33277 wild-type vs Fur orthologue Har isogenic mutant ECR455
GEO Series GSE37099. Porphyromonas gingivalis ATCC 33277; Porphyromonas gingivalis W83. 6 samples. Type: Expression profiling by array.
The retinoblastoma orthologue, rblA, is a major regulator of S-phase, mitotic, and developmental gene expression in Dictyostelium
GEO Series GSE30368. Dictyostelium discoideum. 22 samples. Type: Expression profiling by high throughput sequencing.
Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
GEO Series GSE11721. Canis lupus familiaris; Mus musculus. 7 samples. Type: Expression profiling by array.
Characterization of CD1- and CD1+ porcine blood dendritic cells confirm them as orthologues of the two major mammalian conventional subsets
GEO Series GSE84029. Sus scrofa. 12 samples. Type: Expression profiling by array.
The gain of function mutation blf13 in the barley orthologue of the rice growth regulator NARROW LEAF1 is associated with increased leaf width.
GEO Series GSE232155. Hordeum vulgare. 12 samples. Type: Expression profiling by high throughput sequencing.
The P. falciparum orthologue of Male Development Protein 3 is a Male-associated regulator of translation initiation or enhancement [CLIP-Seq]
GEO Series GSE267362. Plasmodium falciparum. 24 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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