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Dataset results
9 results for “peptide modifications”
Raw data for the article "Small Peptide Diversification through Photoredox-Catalyzed Oxidative C-Terminal Modification"
<p>Raw IR, NMR and Mass data for the article "Small Peptide Diversification through Photoredox-Catalyzed Oxidative C-Terminal Modification" published in Chemical Science: </p> <p><a href="https://doi.org/10.1039/D0SC06180H">https://doi.org/10.1039/D0SC06180H</a></p> <p>The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.</p>
Code and data sets for "DeepLC can predict retention times for peptides that carry as-yet unseen modifications"
<p>Code used to prepare the data sets, calibrate retention times, generate DeepLC models, make predictions, and generate the figures. See README.md for more information on how to use these files and reproduce the results reported in the manuscript titled "DeepLC can predict retention times for peptides that carry as-yet unseen modifications".</p>
Chemical modification of proteins by insertion of synthetic peptides using tandem protein trans-splicing
<p>Source data underlying Figs 2c-e, 3c,e-f, 6c,d,f, and Supplementary Figs S1c, S3a, S4c-e,h-j, S5c, S8b, S9d-e, S10d-e, S11d</p>
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase
<p>MD simulations for MprE7 alone and MprE7 in complex with SprI</p>
Data deposit for "Resolving sulfation post-translational modifications on a peptide hormone using nanopores"
<p><strong>Data and code deposit for the <a href="https://www.biorxiv.org/content/10.1101/2024.05.08.593138v1" target="_blank" rel="noopener">pre-print</a> and the <a href="https://doi.org/10.1021/acsnano.4c09872">published</a> manuscript at ACS nano.</strong></p> <p><strong>See README.md for more information.</strong></p>
Data from: Biologically and diagenetically derived peptide modifications in Moa collagens
The modifications that occur on proteins in natural environments over time are not well studied, yet characterizing them is vital to correctly interpret sequence data recovered from fossils. The recently extinct moa (Dinornithidae) is an excellent candidate for investigating the preservation of proteins, their post-translational modifications (PTMs) and diagenetic alterations during degradation. Moa protein extracts were analysed using mass spectrometry, and peptides from collagen I, collagen II and collagen V were identified. We also identified biologically derived PTMs (i.e. methylation, di-methylation, alkylation, hydroxylation, fucosylation) on amino acids at locations consistent with extant proteins. In addition to these in vivo modifications, we detected novel modifications that are probably diagenetically derived. These include loss of hydroxylation/glutamic semialdehyde, carboxymethyllysine and peptide backbone cleavage, as well as previously noted deamidation. Moa collagen sequences and modifications provide a baseline by which to evaluate proteomic studies of other fossils, and a framework for defining the molecular relationship of moa to other closely related taxa.
Data from: Biologically and diagenetically derived peptide modifications in Moa collagens
Open the record for dataset details and reuse information.
LKRSDH-dependent histone modifications of insulin-like peptide sites contribute to age-related circadian rhythm changes
GEO Series GSE235532. Drosophila melanogaster. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Histone modification-dependent production of peptide hormones facilitates acquisition of pluripotency during leaf-to-callus transition in Arabidopsis
GEO Series GSE236361. Arabidopsis thaliana. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.