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49 results for “phase E”
Long term response of arctic tussock tundra to thermal erosion features: A modeling analysis. Tussock tundra regrowth after a thermal erosion event: Simulation E - reduced Phase I soil organic matter
The Multiple Element Limitation (MEL) model is used to simulate the recovery of Alaskan arctic tussock tundra to thermal erosion features (TEFs) caused by permafrost thaw and mass wasting. TEFs could be significant to regional carbon (C) and nutrient budgets because permafrost soils contain large stocks of soil organic matter (SOM) and TEFs are expected to become more frequent as climate warms. These simulations deal only with recovery following TEF stabilization and do not address initial losses of C and nutrients during TEF formation. To capture the variability among and within TEFs, we simulate a range of post-stabilization conditions by varying the initial size of SOM pools and nutrient supply rates. This file contains the results for 100 years of tussock tundra recovery after a thermal erosion event. This simulation is of TEF recovery with decreasing Phase I soil organic matter compared to the base simulation. Data is presented for day 250 of each year.
BBS phase 1 & phase 2 high quality E. coli bin assembled genomes
<p>1,402 <em>Escherichia coli</em> bin assembled genomes derived from the metagenome data collected as part of the <a href="https://www.ucl.ac.uk/global-health/research/a-z/baby-biome-study">BabyBiome study (BBS)</a> phase 1 & phase 2.</p> <p>The data in this upload was first published as part of "<em>Group 2 and 3 ABC-transporter dependant K-antigen loci contribute significantly to variation in the invasive potential of Escherichia coli"</em> (Gladstone et al. 2024, to be released).</p> <h2>Files</h2> <p>Assembly data:</p> <ul> <li>BBS_E_coli_BAGs.tar: Archive containing sequences of the 1,402 bin assembled genomes.</li> <li>BBS_E_coli_metadata.tsv: Table linking the sequence assemblies to the subject data.</li> </ul> <p>Capsule predictions:</p> <ul> <li>BBS_E_coli_Kaptive_output.csv: Capsule predictions for all sequence data.</li> <li>BBS_E_coli_deduplicated_sequences_IDs.txt: Filenames for assemblies that constitute the 873 deduplicated sequences analysed in Gladstone et al. 2024.</li> </ul> <p>Quality control data:</p> <ul> <li>BBS_E_coli_demix_check_scores.tsv: Output from demix_check for the sequence assemblies.</li> <li>BBS_E_coli_checkm_results.tsv: Output from checkm.</li> <li>BBS_E_coli_gunc_results.tsv: Output from gunc.</li> </ul> <h2>Methods</h2> <h3>Bin assembled genomes</h3> <p>Source data:</p> <ul> <li>BBS phase 1: <a href="https://doi.org/10.1038/s41586-019-1560-1">Shao et al. 2019</a></li> <li>BBS phase 2: <a href="https://doi.org/10.1038/s41564-024-01804-9">Shao et al. 2024</a></li> </ul> <p>The data was produced using the mSWEEP and mGEMS pipeline (<a href="https://doi.org/10.12688/wellcomeopenres.15639.2">Mäklin et al. 2020</a> & <a href="https://doi.org/10.1099/mgen.0.000691">Mäklin et al. 2021</a>) following the steps described in <a href="https://doi.org/10.1038/s41467-024-49591-5">Khawaja, Mäklin, Kallonen, et al. 2024</a>.</p> <h3>Quality control</h3> <p>The BAGs in this upload were filtered with demix_check (<a href="https://github.com/harry-thorpe/demix_check">https://github.com/harry-thorpe/demix_check</a>) and only those with a quality score 1 or 2 are included. For the capsule type annotations, contigs shorter than 5,000bp were removed but the short contigs are still present in the uploaded files). Further QC data is available from checkm (<a href="https://genome.cshlp.org/content/25/7/1043.short">Parks et al. 2015</a>) and gunc (<a href="https://link.springer.com/article/10.1186/s13059-021-02393-0">Orakov et al. 2022</a>) results.</p> <h3>Multilocus sequence typing</h3> <p>Sequence type (ST) was determined using fastmlst (<a href="https://journals.sagepub.com/doi/10.1177/11779322211059238">Guerrero-Araya et al. 2021</a>) with the `ecoli#1` database.</p> <h3>PopPUNK clustering</h3> <p>Sequence clusters (SC) correspond to the database available from <a href="https://zenodo.org/records/12528310">https://zenodo.org/records/12528310</a> and were created using PopPUNK (<a href="https://genome.cshlp.org/content/29/2/304.short">Lees et al. 2019</a>). Construction is described in <a href="https://doi.org/10.1038/s41467-024-49591-5">Khawaja, Mäklin, Kallonen, et al. 2024</a>.</p> <h3>Capsule type annotations</h3> <p>The capsule type annotations were created using Kaptive (<a href="https://doi.org/10.1099/mgen.0.000800">Lam et al. 2022</a>) with an <em>E. coli</em> specific database available from <a href="https://github.com/rgladstone/EC-K-typing">https://github.com/rgladstone/EC-K-typing</a> and described in Gladstone et al. 2024.</p>
Single-crystal elasticity of phase E at high pressure and temperature: Implications for the low-velocity layer atop the 410-km depth
<p>This is the dataset for the paper "Single-crystal elasticity of phase E at high pressure and temperature: Implications for the low-velocity layer atop the 410-km depth".</p>
Figure 2. Stylopallene longicauda, A, B, male dorsal and lateral views of trunk; C, male carrying juveniles, D, mating pair, male dorsal; E, swimming; F, plummeting on completion of the swimming phase.
Figure 2. Stylopallene longicauda, A, B, male dorsal and lateral views of trunk; C, male carrying juveniles, D, mating pair, male dorsal; E, swimming; F, plummeting on completion of the swimming phase.
E-PRISM: Phase II Trial of Elotuzumab Lenalidomide and Dexamethasone in High-Risk Smoldering Multiple Myeloma
ClinicalTrials.gov study NCT02279394. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Safety and Neuroprotective Effects of Polyphenon E in MS; Phase II
ClinicalTrials.gov study NCT01451723. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Co-crystal E-58425 vs Tramadol and Celecoxib for Moderate to Severe Acute Pain After Bunionectomy. Phase III Clinical Trial.
ClinicalTrials.gov study NCT03108482. IPD Sharing: NO. Countries: 1. Publications: 2.
A Phase III Trial of e-TNS for the Acute Treatment of Migraine
ClinicalTrials.gov study NCT03465904. IPD Sharing: NO. Countries: 1. Publications: 1.
FIGURE 2. Magnolia javieri. A. Flower after male phase. B-C. Flowering branches and leaves. D. Dehiscing fruit. E in Three new species of Magnolia (Magnoliaceae) endemic to the north-wet-arc in the Maya Highlands of Guatemala
FIGURE 2. Magnolia javieri. A. Flower after male phase. B-C. Flowering branches and leaves. D. Dehiscing fruit. E. Abaxial side of leaf. F. Seedlings. Photographs by F. Archila.
Dataset for 'Aluminum and iron effects on the electrical conductivity of the dense hydrous magnesium silicate phase E'
<p>This dataset include the raw data of impedance spectra of the 5 samples reported in 'Aluminum and iron effects on the electrical conductivity of the dense hydrous magnesium silicate phase E'. Reading the raw data may need the software 'CView' (http://www.scribner.com).</p> <p>The mossbauer spectra of two samples are also included.</p>
Source data for Ordouie, E. et al. Differential phase-diversity electrooptic modulator for cancellation of fiber dispersion and laser noise.
<p>The experimental data and primary simulation results.</p>
Phase III Randomized Study of SYNSORB Pk in Children With E. Coli-Associated Hemolytic Uremic Syndrome
ClinicalTrials.gov study NCT00004465. IPD Sharing: NO. Countries: 2. Publications: 3.
Phase Ⅳ Clinical Trial of Recombinant Hepatitis E Vaccine（Hecolin®）
ClinicalTrials.gov study NCT02189603. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A Phase III Study of Entecavir vs Lamivudine in Adults With Chronic Hepatitis B Infection and Negative for Hepatitis B e Antigen
ClinicalTrials.gov study NCT00035789. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A Phase III Trial to Assess the Efficacy, Acceptability and Safety of Moviprep® Versus a 4L PEG+E Standard Solution
ClinicalTrials.gov study NCT00389233. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Phase III Study With Idebenone in Patients With Duchenne Muscular Dystrophy (SIDEROS-E)
ClinicalTrials.gov study NCT03603288. IPD Sharing: Not stated. Countries: 9. Publications: 4.
A Phase III Study of Entecavir vs Lamivudine in Adults With Chronic Hepatitis B Infection and Positive for Hepatitis B E Antigen
ClinicalTrials.gov study NCT00035633. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A Phase Ⅳ Clinical Trial of the Recombinant Hepatitis E Vaccine (Escherichia Coli)
ClinicalTrials.gov study NCT02417597. IPD Sharing: Not stated. Countries: 1. Publications: 1.
WALL-E/Vocus AIM data: Online particle phase chemical composition
Open the record for dataset details and reuse information.
Adaptive Empirical Modeling Data for "Thin Current Sheet Formation and Reconnection at $X\sim$-10\,R$_E$ during the Main Phase of a Magnetic Storm"
<p>The ZIP file contains results of AM03 model run for the magnetic storm event on 17 June 2012. </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.