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3,761 results for “phylogenetic relationships”
Dataset of the article "Bayesian phylogenetics illuminate shallower relationships in Trans-Himalayan languages in Tibet-Arunachal area"
<p>This repository archives the dataset of the article "Bayesian phylogenetics illuminate shallower relationships in Trans-Himalayan languages in Tibet-Arunachal area". The cognate annotation of Tshangla, Kho-Bwa, Hrusish, Mishmic, and Tani languages were done by us. The cognate decision on the other languages was annotated by Sagart et al. (2019). Please use the following information to cite our work: <br> Wu, M.-S, Bodt, T. A, Tresoldi, T. (2022). Bayesian phylogenetics illuminate shallower relationships Trans-Himalayan languages in the Tibet-Arunachal area. Linguistics of the Tibeto-Burman Area. [forthcoming]</p>
Supplementary Materials associated with paper 'Complete linear mitochondrial genomes for Cephea cephea and Mastigias albipunctata (Scyphozoa: Rhizostomeae), with an analysis of phylogenetic relationships'
<p>This is a repository for coverage depth graphs and ML-phylogenetic trees that are associated with the paper 'Complete linear mitochondrial genomes for Cephea cephea and Mastigias albipunctata (Scyphozoa: Rhizostomeae), with an analysis of phylogenetic relationships' by Tan KC, Collins AG and Ames CL.</p>
FIG. 1 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 1. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene. Skull MNHN.F.ACA292, probably belonging to a female individual, in dorsal (A), occipital (B), ventral (C) and right lateral (D) views. Scale bar: 50 mm.
FIG. 3 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 3. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene: A-C, right mandible MNHN.F.ACA549 in occlusal (A), labial (B) and lingual (C), views; D-F, right mandible fragment MNHN.F.ACA294 in occlusal (D), labial (E) and lingual (F) views; G-I, right mandible fragment MNHN.F.ACA295 in occlusal (G), labial (H) and lingual (I) views; J, K, left mandible fragment FSL-212806 in lingual (J) and labial (K) views. Scale bar: 50 mm.
FIG. 2 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 2. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene. Skull MNHN.F.ACA291, probably belonging to a male individual, in dorsal (A), occipital (B), ventral (C) and right lateral (D) views. Scale bar: 50 mm.
Fig. 6. a in Phylogenetic relationships of Chanidae (Teleostei: Gonorynchiformes) as impacted by Dastilbe moraesi, from the Sanfranciscana basin, Early Cretaceous of Brazil
Fig. 6. a. Maxilla of Dastilbe moraesi (CPUFMT 734), lateral view, anterior to left; b. Maxilla and premaxilla of Dastilbe crandalli, uncatalogued specimen, lateral view, anterior to left; c. Maxilla and premaxilla of Chanos chanos, ANSP 63199, lateral view, anterior to left. d. Jaws and suspensorium of Dastilbe moraesi (CPUFMT 730, 30.0 mm TFL), lateral view, anterior to left. Synapomorphies of Chanoidei observed are: 1-Large, very broad, concave-convex premaxilla, with long oral process; 2- posterior region of the maxilla expanded in a bulbous outline; 3- quadrate-mandibular articulation anteriorly displaced, anterior to orbit; 4- symplectic elongated; 5- metapterygoid process of hyomandibula present on its anterior border.
Fig. 5 in Description of a new species of Moenkhausia (Characiformes: Characidae) from the upper Paraguay basin, Central Brazil, with comments on its phylogenetic relationships
Fig. 5. Map showing the localities of Moenkhausia flava. Red star represents the type locality. Black square represents the Salto das Nuvens fall and the white square represents Salto Maciel fall.
Fig. 3. Phylogenetic relationships among a in Phylogenomic Species Delimitation, Taxonomy, and 'Bird Guide' Identification for the Neotropical Ant Genus Rasopone (Hymenoptera: Formicidae)
Fig. 3. Phylogenetic relationships among a curated set of COI barcode sequences for Rasopone. Black samples were sequenced for UCEs. Red samples were downloaded from the BOLD database.The tree was inferred using IQ-TREE with the data partitioned by codon position. Black circles on nodes indicate high support, which we define as ≥95% ultrafast bootstrap support and ≥95% SH-like branch support.Terminal names match taxonomic changes proposed in paper and provide useful sample identifiers (e.g., extraction codes [EX#] or BOLD process IDs).A complete, unpruned COI tree is available in Supp Fig. S1 (online only).
Fig. 55. One ofthreetreesfromtotalevidenceanalysiswith POYof 92-taxondatasetusing 2 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 55. One ofthreetreesfromtotalevidenceanalysiswith POYof 92-taxondatasetusing 2: 2 indel ⁄ transition–transversioncostratio, whichhad the lowest MRI value. Bremer support values are shown.
Fig. 53 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 53. One of six trees from total evidence analysis with POY of 92-taxon data set using 1: 1 indel ⁄ transition–transversion cost ratio. (d) Non-homoplasious; (s) homoplasious.
Figs 45–48. 45. Oneoftwotreesderivedfromanalysisofcombinedmoleculardatawith 1 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Figs 45–48. 45. Oneoftwotreesderivedfromanalysisofcombinedmoleculardatawith 1: 1 indel ⁄ transition–transversioncostratio. 46. Singletree derivedfromanalysisofcombinedmoleculardatawith 2: 2 indel ⁄ transition–transversioncostratio. 47. Singletreederivedfromanalysisof ~500 bp of 16S rRNAdatausing 1: 1 indel ⁄ transition–transversioncost ratio. 48. Singletreederivedfromanalysis of ~1800 bpof 18S rRNAusing 1: 1 indel ⁄ transition–transversioncostratio.
Fig. 43 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 43. Strict consensus of three trees derived from successive weighting of the results shown in Fig. 42. (d) Non-homoplasious; (s) homoplasious.
Figs 16–24. 16 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Figs 16–24. 16. Saileriola sandakanensis (Saileriolidae). Coxae of middle and hind legs more distant from each other. 17a. Cydnus aterrimus (Cydnidae): hind tibiae, posterior view; 17b. Dallasiellus dilatipes (Cydnidae): fore tibiae, anterior view. 18. Ruckesona vitrella (Saileriolidae). Abdominal trichobothria. 19. Serbana borneensis (Phloeidae). Abdominal trichobothria. 20. Atarsocoris sp. (Cydnidae). Abdominal trichobothria. 21. Edessa sp. (Pentatomidae). Abdominal spiracles well removed from lateral margins of sternum. 22. Phloea subquadrata (Phloeidae). Male abdominal segment VIII with spiracles. 23. Tessaratoma papillosa (Tessaratomidae). Spiracles on second segment totally exposed and far removed from lateral margins of sternum. 24. Ruckesona vitrella (Saileriolidae), female. Sternite VII split on the midline.
Data from: New cranial fossils of the Jurassic turtle Neusticemys neuquina and phylogenetic relationships of the only thalassochelydian known from the Eastern Pacific
Neusticemys neuquina is a turtle from the Upper Jurassic of the Neuquén Basin, Patagonia, Argentina. Here we describe in detail a new skull, lower jaw, and a vertebra, utilizing both traditional anatomical description and computed tomography (CT). New diagnostic cranial characters of Ne. neuquina are: a round depression on the ventral surface of the basisphenoid, a relatively larger oval foramen nervi trigemini and reduced and steepened triturating surfaces on both the maxilla and dentary. The new morphological information presented in this study was included in a phylogenetic analysis, the primary result of which was recovery of Ne. neuquina within Thalassochelydia. Characters recognized as synapomorphies of this clade include (1) anterolateral recess of the anterior surface of the quadrate positioned lateral to the processus trochlearis oticum, (2) presence of a fossa on the supraoccipital-opisthotic-exoccipital contact area, (3) foramina anterius caroticus cerebralis located close together but independently perforating the basisphenoid, and (4) presence of the splenial in the mandible. Two contrasting dispersal scenarios may explain how this species of Thalassochelydia can be found outside of Europe. The presence of Ne. neuquina in the Neuquén Basin could be the consequence of an early dispersion event, for which we lack intermediate forms, or it may be the result of a later event once the clade was already established in Europe.
Fig. 25 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 25. Habitat of Tachydromia ebejeri Gonçalves, Grootaert & Andrade sp. nov. in a forest of Quercus pyrenaica Willd. in Portugal, Arganil, Benfeita (Mata da Margaraça), a region under submediterranean influence.
Fig. 24 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 24. Forest of Fagus sylvatica L. in the Apennine Mountains, where Tachydromia apterygon Plant & Deeming, 2006 can be found.
Fig. 21 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 21. Drawings of the tip of stenopterous wings and images obtained by scanning electron microscope (SEM) of the micropterous wings. Males are pictured in the left column, females in the right. A, C. T. pandellei (Séguy, 1941). B–C. T. pieltaini (Gil Collado, 1936). D–E. T. semiaptera (Gil Collado, 1923). F–G. T. stenoptera Gonçalves, Grootaert & Andrade sp. nov. Scale bars: A–D, F = 50 µm; E, G = 10 µm.
Fig. 19 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 19. Images obtained by scanning electron microscopy of the spur-like structures present on the apical portion of the male mid tibia. A. T. lusitanica (Grootaert, Shamshev & Andrade, 2009). B. T. pandellei (Séguy, 1941). C. T. pieltaini (Gil Collado, 1936). D. T. ebejeri Gonçalves, Grootaert & Andrade sp. nov. E–F. T. semiaptera (Gil Collado, 1923). G. T. stenoptera Gonçalves, Grootaert & Andrade sp. nov. H. T. cantabrica Gonçalves, Grootaert & Andrade sp. nov. I. T. nigrohirta Gonçalves, Grootaert & Andrade sp. nov. J. T. apterygon Plant & Deeming, 2006. Scale bars: 10 µm.
Fig. 17 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 17. Mounted specimens of the Iberian ant-like Tachydromia Meigen, 1803. Males are pictured in the left column, females in the right. A–B. T. lusitanica (Grootaert, Shamshev & Andrade, 2009). C–D. T. nigrohirta Gonçalves, Grootaert & Andrade sp. nov. E–F. T. ebejeri Gonçalves, Grootaert & Andrade sp. nov. G–H. T. stenoptera Gonçalves, Grootaert & Andrade sp. nov. Scale bars: 1 mm.
Fig. 23 in Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Fig. 23. Distribution of Tachydromia apterygon Plant & Deeming, 2006 in Italy. Nine localities are currently known.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.