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Inter-Chemical Correlation results for the study: HHEARx2016-1534 (A Nested Case-Control Study of Prenatal Exposure to Phthalates and Psychosocial Stress: Adverse Pregnancy Outcomes and the Mediating Role of Placental Function)
Title: A Nested Case-Control Study of Prenatal Exposure to Phthalates and Psychosocial Stress: Adverse Pregnancy Outcomes and the Mediating Role of Placental Function <br>Species: Homo sapiens <br>Number of samples: 5789 <br>Number of named analytes: 17 <br>Datasource url: https://hheardatacenter.mssm.edu/PublicFile/ViewPublicFile?projectid=14 <br>
Genomic evidence for the parallel regression of melatonin synthesis and signaling pathways in placental mammals
<p><strong>Supplementary Material for:</strong></p> <p>Emerling C.A., Springer M.S., Gatesy J., Jones Z., Hamilton D., Xia-Zhu D., Collin M.A., and Delsuc F. (2021). Genomic evidence for the parallel regression of melatonin synthesis and signaling pathways in placental mammals.<strong><em> Open Research Europe</em></strong> 1:75. doi:10.12688/openreseurope.13795.1.</p> <p> </p> <p><strong>Supplementary File Legends:</strong></p> <p><strong>- Supplementary_Figure_S1.pdf:</strong> <em>AANAT</em> PAML ‘master model’ showing branch categories, corresponding to “Model 1: 24 ratio” in Supplementary Table S7.</p> <p><strong>- Supplementary_Figure_S2.pdf:</strong> <em>ASMT</em> PAML ‘master model’ showing branch categories, corresponding to “Model 2: 24 ratio” in Supplementary Table S8.</p> <p><strong>- Supplementary_Figure_S3.pdf:</strong> <em>MTNR1A</em> PAML ‘master model’ showing branch categories, corresponding to “Model 1: 27 ratio” in Supplementary Table S9.</p> <p><strong>- Supplementary_Figure_S4.pdf:</strong> <em>MTNR1B</em> PAML ‘master model’ showing branch categories, corresponding to “Model 1: 46 ratio” in Supplementary Table S10.</p> <p><strong>- Supplementary_Figure_S5.pdf:</strong> RAxML <em>AANAT</em> gene tree. Numbers at nodes correspond to bootstrap support values.</p> <p><strong>- Supplementary_Figure_S6.pdf: </strong>RAxML <em>ASMT</em> gene tree. Numbers at nodes correspond to bootstrap support values.</p> <p><strong>- Supplementary_Figure_S7.pdf: </strong>RAxML <em>MTNR1A</em>+<em>MTNR1B</em> tree. Numbers at nodes correspond to bootstrap support values.</p> <p><strong>- Supplementary_Figure_S8.pdf: </strong>Supporting data showing the inactivation of <em>MTNR1A</em> exon 2 in cetaceans. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S9.pdf: </strong>Supporting data showing the inactivation of <em>ASMT</em> in spalacids and <em>Fukomys damarensis</em>. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S10.pdf: </strong>Supporting data showing the inactivation of <em>MTNR1A</em> in hyracoids and <em>Cyclopes didactylus</em>. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S11.pdf: </strong>Supporting data showing the inactivation of <em>MTNR1A</em> in sirenians. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S12.pdf: </strong>Supporting data showing the inactivation of <em>AANAT</em> in sirenians and a polymorphic premature stop codon in exon 5 of <em>ASMT</em> in <em>Trichechus manatus</em>. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S13.pdf: </strong>Supporting data showing the inactivation of <em>MTNR1A</em> in <em>Condylura cristata</em>. Read Supplementary Table S13 for further details.</p> <p><strong>- Supplementary_Figure_S14.pdf: </strong>Supporting data showing the inactivation of <em>MTNR1A</em> in <em>Phataginus tricuspis</em>. Read Supplementary Table S14 for further details.</p> <p><strong>- Supplementary_Figure_S15.pdf: </strong>PAML <em>AANAT</em> results, Model 1: 24 ratio (see Supplementary Table S7).</p> <p><strong>- Supplementary_Figure_S16.pdf: </strong>PAML <em>ASMT</em> results, Model 2: 24 ratio (see Supplementary Table S8).</p> <p><strong>- Supplementary_Figure_S17.pdf: </strong>PAML <em>MTNR1A</em> results, Model 1: 27 ratio (see Supplementary Table S9).</p> <p><strong>- Supplementary_Figure_S18.pdf: </strong>PAML <em>MTNR1B</em> results, Model 1: 46 ratio (see Supplementary Table S10).</p> <p><strong>- Supplementary_Table_S1.xlsx: </strong>List of species examined in this study and the sources of the genes. Source key: WGS: Sequences derived from NCBI's Whole Genome Shotgun database, with accession prefix provided; Whole Genome Sequencing of Short Reads: whole genomes were sequenced using short-read technologies. The methodologies varied for the species, and will be or have been published with other projects, so please contact the author(s) for information on the specific methodology and samples used (Xenarthrans, <em>Proteles cristatus</em>, <em>Otocyon megalotis</em>: Frédéric Delsuc, e-mail: Frederic.Delsuc@umontpellier.fr; Crocodylians: John Gatesy, e-mail: jgatesy@amnh.org; <em>Dugong dugon</em>: Mark Springer, e-mail: mark.springer@ucr.edu; SRA: sequences derived from NCBI's Sequence Read Archive; GenBank: sequences derived from NCBI's nucleotide collection; Bowhead Whale Genome Resource: sequences derived from http://www.bowhead-whale.org; Ensembl: sequences derived from Ensembl genome browser (www.ensembl.org)l; Discovar de novo: sequences derived genomes assembled via Discovar de novo (<a href="https://software.broadinstitute.org/software/discovar/blog/">https://software.broadinstitute.org/software/discovar/blog/</a>). Coverage: indicates coverage of the whole genome (reported in NCBI or other source) or individual genes (derived from short read mapping). Scaffold and contig N50: reported in NCBI or other source.</p> <p><strong>- Supplementary_Table_S2.xlsx: </strong>Accession numbers and functionality of <em>AANAT</em> in species examined. If Accession # indicated as “New”, sequence generated for this study and can be found in Supplementary Dataset S1. Parentheses after accession number indicates coordinates for sequence on the contig / scaffold. Exon colors code for the following: green = putatively functional; yellow = missing (e.g., negative BLAST results, negative mapping results); pink = one or more inactivating mutations found. Abbreviations for mutations are as follows: del = deletion; ins = insertion; start = start codon mutation; stop = premature stop codon; ? = ambiguity whether the mutation is shared among all members of the clade. Abbreviations in brackets following an inactivating mutation indicate shared inactivating mutation. Key for each abbreviation follows: Bacu = <em>Balaenoptera acutorostrata</em>; BALA = Balaenidae; BALAEN = Balaenopteridae; Bbon = <em>Balaenoptera bonaerensis</em>; CAB = <em>Cabassous</em>; Ccap = <em>Cebus capucinus</em>; CETA = Cetacea; CHLAM = Chlamyphoridae; CHOL = <em>Choloepus</em>; Cjac = <em>Callithrix jacchus</em>; CING = Cingulata; DASY = Dasypodidae; DELP = Delphinidae; DERM = Dermoptera; Erob = <em>Eschrichtius robustus</em>; INIA = <em>Inia</em>; FOLI = Folivora; GALE = <em>Galeopterus</em>; LIPO = <em>Lipotes</em>; Lobl = <em>Lagenorhynchus obliquidens</em>; MANI = Manidae; MONO = Monodontidae; MYRM = Myrmecophagidae; MYST = Mysticeti; NPP = Not present in <em>Platanista</em> or Physeteroidea, but present in other Odontocetes; NPZ = Not present in Ziphiidae, but present in other Odontocetes; Oorc = <em>Orcinus orca</em>; PEUT = Tolypeutinae; PHOC = Phocoenidae; PHOL = Pholidota; PHOR = Chlamyphorinae; PILO = Pilosa; PHYS = Physeteroidea; PONT = <em>Pontoporia</em>; Schi = <em>Sousa chinensis</em>; SIRE = Sirenia; Tadu = <em>Tursiops aduncus</em>; TOLY = <em>Tolypeutes</em>; VERM = Vermilingua; XEN = Xenarthra.</p> <p><br> <strong>- Supplementary_Table_S3.xlsx: </strong>Accession numbers and functionality of <em>ASMT</em> in species examined. See Table S2 caption for details.</p> <p><strong>- Supplementary_Table_S4.xlsx: </strong>Accession numbers and functionality of <em>MTNR1A</em> in species examined. See Table S2 caption for details.</p> <p><strong>- Supplementary_Table_S5.xlsx: </strong>Accession numbers and functionality of <em>MTNR1B</em> in species examined. See Table S2 caption for details.</p> <p><strong>- Supplementary_Table_S6.xlsx: </strong>Codon frequency model selection. These are the results from one ratio dN/dS analyses using different codon frequency models. AIC = Akaike Information Criterion.</p> <p><strong>- Supplementary_Table_S7.xlsx: </strong>Results of <em>AANAT</em> PAML dN/dS analyses for mammals. Model: BG = branch(es) grouped with background; fixed 1 = branch(es) fixed at 1. p’-value: p-value after Holm-Bonferroni correction for multiple testing. Model Comparison: if model comparison yields statistically significant differences (p < 0.05), model comparison bolded and given green background; if model comparison is still significant after Holm-Bonferroni correction, asterisk (*) added. For most models, w only shown for branch(es) of interest. Numbers in front of taxonomic names in first row correspond to numbers in the master model shown in Supplementary Figure S1.</p> <p><strong>- Supplementary_Table_S8.xlsx: </strong>Results of <em>ASMT</em> PAML dN/dS analyses for mammals. Refer to Table S7 caption for additional details. Numbers in front of taxonomic names in first row correspond to numbers in the master model shown in Supplementary Figure S2.</p> <p><strong>- Supplementary_Table_S9.xlsx: </strong>Results of <em>MTNR1A</em> PAML dN/dS analyses for mammals. Refer to Table S7 caption for additional details. Numbers in front of taxonomic names in first row correspond to numbers in the master model shown in Supplementary Figure S3.</p> <p><strong>- Supplementary_Table_S10.xlsx: </strong>Results of <em>MTNR1B</em> PAML dN/dS analyses for mammals. Refer to Table S7 caption for additional details. Numbers in front of taxonomic names in first row correspond to numbers in the master model shown in Supplementary Figure S4.</p> <p><strong>- Supplementary_Table_S11.xlsx: </strong>Results of PAML analyses for sauropsids.</p> <p><strong>- Supplementary_Table_S12.xlsx: </strong>Results of BLASTing and mapping short reads from <em>Alligator mississippiensis</em> RNA sequencing experiments.</p> <p><strong>- Supplementary_Table_S13.xlsx: </strong>Supporting data for validating putative inactivating mutations. Validating data came from four general sources of information: mutations shared by more than one species within a clade, mutations shared by two sources of sequencing data for the same species, mutations validated by coverage of mapped short reads and statistically elevated dN/dS ratio estimates. For additional details, see Supplementary Tables S2–S5 and S7–S10, as well as Figure 2 and Supplementary Figures S8–S18.</p> <p><strong>- Supplementary_Dataset_S1.txt:</strong><strong> </strong>Genomic alignments in fasta format used to determine the pseudogene/functional status of all four melatonin genes in different taxonomic groups.</p> <p><strong>- Supplementary_Dataset_S2.txt:</strong><strong> </strong>Alignment of <em>AANAT</em> in phylip format used in maximum likelihood phylogenetic reconstruction with RAxML. </p> <p><strong>- Supplementary_Dataset_S3.txt: </strong>Alignment of <em>ASMT</em> in phylip format used in maximum likelihood phylogenetic reconstruction with RAxML. </p> <p><strong>- Supplementary_Dataset_S4.txt: </strong>Alignment of <em>MTNR1A</em> and <em>MTNR1B</em> in phylip format used in maximum likelihood phylogenetic reconstruction with RAxML. </p> <p><strong>- Supplementary_Dataset_S5.txt:</strong><strong> </strong>Codon alignments of <em>AANAT</em> used in selection pressure analyses with PAML. </p> <p><strong>- Supplementary_Dataset_S6.txt: </strong>Codon alignments of <em>ASMT</em> used in selection pressure analyses with PAML.</p> <p><strong>- Supplementary_Dataset_S7.txt:</strong><strong> </strong>Codon alignments of <em>MTNR1A</em> used in selection pressure analyses with PAML.</p> <p><strong>- Supplementary_Dataset_S8.txt: </strong>Codon alignments of <em>MTNR1B</em> used in selection pressure analyses with PAML.</p> <p><strong>- Supplementary_Dataset_S9.txt: </strong>Tree topologies in newick format used in selection pressure analyses with PAML.</p>
2d U-net models trained to segment human placental maternal/fetal blood volumes and blood vessels from syncrotron micro-CT data along with a sample data volume.
<p>This dataset contains a 512 x 512 x 512 pixel volume taken from an imaging dataset of human placental tissue collected at Diamond Light Source Manchester Imaging Branchline, I13-2 on visits MG23941 and MG22562 using in-line high-resolution synchrotron-sourced phase contrast micro-computed X-ray tomography. This data is saved in HDF5 format with a uint8 datatype. Alongside this are two 2d binary U-net models that have been trained to segment this data. One model segments the data into regions of maternal/fetal blood volume, the other segments the blood vessels. Both models were trained using the fastai python package, which utilises the pytorch library. These models were used to segment the data in our paper "A massively multi-scale approach to characterising tissue architecture by synchrotron micro-CT applied to the human placenta" which can be found at <a href="https://www.biorxiv.org/content/10.1101/2020.12.07.411462v1">https://www.biorxiv.org/content/10.1101/2020.12.07.411462v1</a>. The code used for training the U-net models and for predicting the segmentation of the data volume can be found at <a href="https://github.com/DiamondLightSource/placental-segmentation-2dunet">https://github.com/DiamondLightSource/placental-segmentation-2dunet</a> and is published at <a href="https://doi.org/10.5281/zenodo.4252562">https://doi.org/10.5281/zenodo.4252562</a> </p>
Morgan Ernest, 2003: Life history characteristics of placental non-volant mammals
S. K. Morgan Ernest. 2003. Life history characteristics of placental non-volant mammals. Ecology 84:3402.<p></p>S. K. Morgan Ernest. 2003. Life history characteristics of placental non-volant mammals. Ecology 84:3402.
FIG. 15 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 15. — Upper molar proportions in Euungulata, "Condylarthra", SANUs, and the kollpaniines from Tiupampa described here. Molar proportions are plotted in the developmental 'morphospace' (Kavanagh et al. 2007; Polly 2007) where the white region is consistent with the IC model; the broken line is the relationship predicted for lower molar of murine rodents (see Material and methods and Table 8). Abbreviations: Kalith., Kalitherium.
FIG. 11 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 11. — Pucanodus gagnieri: partial right mandible with m2-3 (MHNC 13869): A, stereophotograph of occlusal view; B, the same in labial view. Scale bar: 5 mm.
FIG. 4 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 4. — Molinodus suarezi: partial maxilla (MHNC 13870) with incomplete M1-2 and complete M3. Stereophotograph of occusal view. Scale bar: 5 mm.
FIG. 7 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 7. — Simoclaenus sylvaticus: partial right mandible with alveolus of p1, root of p2-3, p4 and m1 (MHNC 13872): A, stereophotographs of occlusal view; B, the same in lateral view; C, the same in medial view. Scale bar: 5 mm.
FIG. 2 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 2. — Partial left mandible of Molinodus suarezi (MHNC 13867) bearing p3-m3: A, stereophotographs of the occlusal view; B, lingual view; C, labial view. Scale bar: 5 mm.
FIG. 13. — A, B in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 13. — A, B, Lamegoia conodonta; C, didolodontidae indet.; A, occlusal view of a left m2 of Lamegoia conodonta (cast of holotype MNRJ 1463-V); B, occlusal view of a right M2 (reversed) of Lamegoia conodonta (cast of MNRJ 1465-V); C, occlusal view of a left M2 (cast of MNRJ 1464-V) of and undetermined didolodont (referred by Paula Couto [1952a] to L. conodonta). Scale bar: 5 mm.
FIG. 5 in New remains of kollpaniine "condylarths" (Panameriungulata) from the early Palaeocene of Bolivia shed light on hypocone origins and molar proportions among ungulate-like placentals
FIG. 5. — Molinodus suarezi: partial maxilla (MHNC 13870): A, occlusal view; B, lingual view. Scale bar: 5 mm.
Open data repository, Boehm-Sturm et al., Phenotyping placental oxygenation in Lgals1 deficient mice using 19F MRI
<p>Open data repository of journal article "Phenotyping placental oxygenation in Lgals1 deficient mice using <sup>19</sup>F MRI"</p>
Placental Expression Quantitative Trait Loci In An East Asian Population
<p>Analysis script, full eQTL summary statistics, and fine-mapping statistics of article "Placental Expression Quantitative Trait Loci In An East Asian Population". This data contains workflow and result of 102 East Asian placental expression quantitative trait loci analysis.</p><p>Genotype from 102 cord blood used in the analysis is also included. Variants with minor allele frequencies less than 0.01 was filtered out to prevent personnel identification.</p>
Single-cell sequencing data of human umbilical cord and placental mesenchymal stem cells
<p>Expression matrix of umbilical cord and placenta single-cell sequencing data from the same donor.Table1 is the umbilical cord and Table2 is the placenta.</p>
Text-fig. 8. Scanning electron micrographs (a–f, h) and X-ray microtomographic orthoslices (g) of flowers from Zliv-Řídká Blana locality. a: Taxon 27, epigynous flower, no. NM-F 4504; b: Taxon 30, epigynous flower, remains of two thick sepals, a massive nectary disk (arrowhead) and two styles, no. NM-F 3199; c: Taxon 29, flower with stamens have long filament, calyx (ca) and corolla (co), no. NM-F 3198; d: Taxon 32, flower, no. NM-F 4503; e–h: Taxon 14, e – hypogenous flower, no. NM-F 3196, f – floral bud with a thick pedicel, no. NM-F 3196, g – flower with gynoecium showing central placentation and several seeds, no. NMF 3196, h – flower with gynoecium showing several seeds, no. NM-F 4505. in Plant Mesofossils From The Late Cretaceous Klikov Formation, The Czech Republic
Text-fig. 8. Scanning electron micrographs (a–f, h) and X-ray microtomographic orthoslices (g) of flowers from Zliv-Řídká Blana locality. a: Taxon 27, epigynous flower, no. NM-F 4504; b: Taxon 30, epigynous flower, remains of two thick sepals, a massive nectary disk (arrowhead) and two styles, no. NM-F 3199; c: Taxon 29, flower with stamens have long filament, calyx (ca) and corolla (co), no. NM-F 3198; d: Taxon 32, flower, no. NM-F 4503; e–h: Taxon 14, e – hypogenous flower, no. NM-F 3196, f – floral bud with a thick pedicel, no. NM-F 3196, g – flower with gynoecium showing central placentation and several seeds, no. NMF 3196, h – flower with gynoecium showing several seeds, no. NM-F 4505.
Text-fig. 4. Scanning electron micrographs (a, c, e–k) and X-ray microtomographic orthoslices (b, d) of capsular fruits compose of five carpels from Zliv-Řídká Blana locality. a–d: Taxon 4, a – fruit elliptical in shape, no. NM-F 3188, b – young fruit with reminisce of free styles at top and showing central placentation of seeds, no. NM-F 3188, c – pentacarpellate capsules in apical view, no. NM-F 3188, d – fruit with five locules, no. NM-F 3235; e, f: Taxon 6, e – elongated fruit in lateral view, the persistent perianth at the base of the fruit (arrowhead), no. NM-F 3194, f – fruit in apical view, no. NM-F 3194; g, h: Taxon 5, g – elongated fruit in lateral view, no. NM-F 3193, h – fruit showing remains of a persistent calyx in the basal part (arrowhead), no. NM-F 3193; i–k: Taxon 7, i – pentacarpellate capsules of broadly elliptical shape, no. NM-F 4091, j – fruit, apical view, no. NM-F 4091, k – fruit with five seeds (arrowheads) ellipsoidal or triangular in outline and with a thick seed coat, no. NM-F 4091. in Plant Mesofossils From The Late Cretaceous Klikov Formation, The Czech Republic
Text-fig. 4. Scanning electron micrographs (a, c, e–k) and X-ray microtomographic orthoslices (b, d) of capsular fruits compose of five carpels from Zliv-Řídká Blana locality. a–d: Taxon 4, a – fruit elliptical in shape, no. NM-F 3188, b – young fruit with reminisce of free styles at top and showing central placentation of seeds, no. NM-F 3188, c – pentacarpellate capsules in apical view, no. NM-F 3188, d – fruit with five locules, no. NM-F 3235; e, f: Taxon 6, e – elongated fruit in lateral view, the persistent perianth at the base of the fruit (arrowhead), no. NM-F 3194, f – fruit in apical view, no. NM-F 3194; g, h: Taxon 5, g – elongated fruit in lateral view, no. NM-F 3193, h – fruit showing remains of a persistent calyx in the basal part (arrowhead), no. NM-F 3193; i–k: Taxon 7, i – pentacarpellate capsules of broadly elliptical shape, no. NM-F 4091, j – fruit, apical view, no. NM-F 4091, k – fruit with five seeds (arrowheads) ellipsoidal or triangular in outline and with a thick seed coat, no. NM-F 4091.
Text-fig. 3. Juglandaceae. Carya (a–x). Scale bars = 1 cm. a–e: USNM PAL 772346. Micro-CT scan surface rendering. a, b: Lateral, c: apical, d: basal views. e: Virtual equatorial transverse section. f–n: USNM PAL 772347. f: Lateral view, reflected light, showing path of saw cut for transverse section of (i). g: Basal view, reflected light. h: Apical view, micro-CT surface rendering. i: Physical transverse section displaying locule and cellular preservation of parts of wall. j–n: Virtual sections from micro-CT scan data. j: Transverse section at apical 1/3 of nut. Note narrow lacunae (arrows). k: Longitudinal section parallel to primary septum, traversing one of the cotyledon lobes and showing secondary septum at base. l: Longitudinal section in plane at right angles to (k) in plane of primary septum, showing divergent placental bundles arising from base of nut (arrows). m: Equatorial transverse section showing two lobes of locule separated by primary septum. n: Transverse section near base of nut showing primary and secondary septa, creating four basal lobes of locule; note diverging placental bundles (arrows). o–x: USNM PAL 772351. o: Lateral view of broken nut with exposed locule cast, reflected light. p: Same orientation of nut, micro-CT surface rendering. q: Same specimen lateral view, rotated 90° from (p), micro-CT surface rendering. r: Apical view, reflected light. s–x: Virtual sections from micro-CT in The Early Middle Eocene Wagon Bed Carpoflora Of Central Wyoming, U.S.A.
Text-fig. 3. Juglandaceae. Carya (a–x). Scale bars = 1 cm. a–e: USNM PAL 772346. Micro-CT scan surface rendering. a, b: Lateral, c: apical, d: basal views. e: Virtual equatorial transverse section. f–n: USNM PAL 772347. f: Lateral view, reflected light, showing path of saw cut for transverse section of (i). g: Basal view, reflected light. h: Apical view, micro-CT surface rendering. i: Physical transverse section displaying locule and cellular preservation of parts of wall. j–n: Virtual sections from micro-CT scan data. j: Transverse section at apical 1/3 of nut. Note narrow lacunae (arrows). k: Longitudinal section parallel to primary septum, traversing one of the cotyledon lobes and showing secondary septum at base. l: Longitudinal section in plane at right angles to (k) in plane of primary septum, showing divergent placental bundles arising from base of nut (arrows). m: Equatorial transverse section showing two lobes of locule separated by primary septum. n: Transverse section near base of nut showing primary and secondary septa, creating four basal lobes of locule; note diverging placental bundles (arrows). o–x: USNM PAL 772351. o: Lateral view of broken nut with exposed locule cast, reflected light. p: Same orientation of nut, micro-CT surface rendering. q: Same specimen lateral view, rotated 90° from (p), micro-CT surface rendering. r: Apical view, reflected light. s–x: Virtual sections from micro-CT
Fig. 7 in The new Southeast Asian genus Cambonilla gen. nov. (Zodariidae, Araneae): ' bis repetita placent'
Fig. 7. Cambonilla securicula Jocqué gen. et sp. nov. A–B. Male holotype. C. Female paratype (RBINS IG 33.889/003). A. Male palp, ventral view. B. As preceding, retrolateral view. C. Epigyne, ventral view. Abbreviations: C = conductor; E = embolus; EB = embolus base; MA = median apophysis; TM = tegular membranous area. Scale bars: A–B = 0.5 mm; C = 0.2 mm.
Fig. 10 in The new Southeast Asian genus Cambonilla gen. nov. (Zodariidae, Araneae): ' bis repetita placent'
Fig. 10. Cambonilla symphonia Jocqué & Henrard gen. et sp. nov. A–B. Male holotype. C. Female paratype (RBINS IG 33.889/008). A. Male palp, retrolateral view. B. As preceding, ventral view. C. Epigyne, ventral view. Abbreviations: C = conductor; E = embolus; EB = embolus base; MA = median apophysis; TM = tegular membranous area. Scale bars: A–B = 0.5 mm; C = 1 mm; D–F = 0.2 mm.
Fig. 9 in The new Southeast Asian genus Cambonilla gen. nov. (Zodariidae, Araneae): ' bis repetita placent'
Fig. 9. Cambonilla symphonia Jocqué & Henrard gen. et sp. nov., female paratype (RBINS IG 33.889/008) A. Habitus, dorsal view. B. Habitus, ventral view. C. Abdomen, posterior part, ventral view. D. Epigyne, ventral view. Scale bars A–B = 5 mm; C = 0.5 mm; D–F = 0.2 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.