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185 results for “plant conservation”
Plant Atlas 2020 — British and Irish plant conservation statuses
<p>Plant Atlas 2020 is the most comprehensive survey of plants (flowering plants, ferns and charophytes) ever undertaken in Britain and Ireland. It is based on over 30 million records, collected mainly by volunteer recorders of the Botanical Society of Britain and Ireland (BSBI) between 2000 and 2019, as well as previous nationwide surveys undertaken in the 1950s and 1990s. This resource provides the data behind the conservation status tables presented on the Conservation tabs of species’ pages of the Plant Atlas 2020 website (<a href="http://www.plantatlas2020.org"><span>www.plantatlas2020.org</span></a><span>).</span></p>
Scored protein-protein interactions accompanying "A pan-plant protein complex map reveals deep conservation and novel assemblies"
<p><a href="http://plants.proteincomplexes.org/static/data/panplant_cfms_scores_annot.txt.gz">All scored pairwise protein-protein interactions with CF-MS scores (3,076,999 unique pairwise interactions)</a></p> <ul> <li>Description: Scores between Orthogroups with the corresponding CF-MS score and eggNOG generated orthogroup descriptions.</li> <li>Note: Only the highest scoring pairs are considered significant. A CF-MS score >= 0.509 corresponds to 10% FDR, >= 0.207 corresponds to 50% FDR</li> <li>Format: OrthogroupID1 [tab] OrthogroupID2 [tab] Score [tab] Annotation1 [tab] Annotation2</li> </ul>
Supplementary material 3 from: Bongard C, Butler K, Fulthorpe R (2013) Investigation of fungal root colonizers of the invasive plant Vincetoxicum rossicum and co-occurring local native plants in a field and woodland area in Southern Ontario. Nature Conservation 4: 55-76. https://doi.org/10.3897/natureconservation.4.3578
Supplementary material 3 from: Bongard C, Butler K, Fulthorpe R (2013) Investigation of fungal root colonizers of the invasive plant Vincetoxicum rossicum and co-occurring local native plants in a field and woodland area in Southern Ontario. Nature Conservation 4: 55-76. https://doi.org/10.3897/natureconservation.4.3578
Direct molecular evidence for an ancient, conserved developmental toolkit controlling post-transcriptional gene regulation in land plants
<p>In plants, miRNA production is orchestrated by a suite of proteins that control transcription of the pri-miRNA gene, post-transcriptional processing and nuclear export of the mature miRNA. Post-transcriptional processing of miRNAs is controlled by a pair of physically-interacting proteins, HYL1 and DCL1. However, the evolutionary history and structural basis of the HYL1-DCL1 interaction is unknown. Here we use ancestral sequence reconstruction and functional characterization of ancestral HYL1 <em>in vitro</em> and in <em>Arabidopsis thaliana </em>to better understand the origin and evolution of the HYL1-DCL1 interaction and its impact on miRNA production and plant development. We found the ancestral plant HYL1 evolved high affinity for both double-stranded RNA (dsRNA) and its DCL1 partner before the divergence of mosses from seed plants (~500 Ma), and these high-affinity interactions remained largely conserved throughout plant evolutionary history. Structural modeling and molecular binding experiments suggest that the second of two double-stranded RNA-binding motifs (DSRMs) in HYL1 may interact tightly with the first of two C-terminal DCL1 DSRMs to mediate the HYL1-DCL1 physical interaction necessary for efficient miRNA production. Transgenic expression of the nearly 200 Ma-old ancestral flowering-plant HYL1 in <em>A. thaliana</em> was sufficient to rescue many key aspects of plant development disrupted by HYL1<sup>-</sup> knockout and restored near-native miRNA production, suggesting that the functional partnership of HYL1-DCL1 originated very early in and was strongly conserved throughout the evolutionary history of terrestrial plants. Overall, our results are consistent with a model in which miRNA-based gene regulation evolved as part of a conserved plant ‘developmental toolkit’.</p>
Protein elution profiles accompanying "A pan-plant protein complex map reveals deep conservation and novel assemblies"
<p>Key to files</p> <p><strong>Experiment_Order.csv</strong></p> <ul> <li>Description: Meta details of each experiment.</li> <li>Format: experiment_name,ExperimentID_order,tissue,experiment_type,spec,ExperimentID</li> </ul> <p><strong>Fraction_Details.csv</strong></p> <ul> <li>Description: Meta details of each fraction</li> <li>Format:FractionID,frac_order,ExperimentID</li> </ul> <p><strong>plant_virNOG_orthology.csv.gz</strong></p> <ul> <li>Description: Conversion between orthogroup and protein IDs.</li> <li>Format:ID,ProteinID,spec</li> </ul> <p><strong>orthogroup_annotation.csv.gz</strong></p> <ul> <li>Description: Orthogroup annotations</li> <li>Format:ID,Annotation,arath_genenames,arath_Entries,arath_Entry_names,arath_Protein_names,disruptions,tair_disruptions,lloyd2012_LOFs,arath_functions,arath_misc,pathway,unipathway,BioCyc,Reactome,BRENDA,kegg_pws,ec,arath_masses,arath_protein_names,arath_GO,devstages,tissues,tair,araport,orysj_genenames,orysj_Entries,orysj_Entry_names,orysj_Protein_names,orysj_disruptions,orysj_functions,orysj_misc</li> </ul> <p><strong>panplant_tidy_elution_virNOG.csv.gz</strong></p> <ul> <li>Description: Tidy (long format) table of counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong> for all experiments. Includes parts per million in each fraction. </li> <li>Format: ExperimentID,FractionID,ID,Total_PeptideCount,spec,ExperimentID_order,FractionID_order,abundance_ppm</li> </ul> <p><strong>panplant_tidy_elution_protcount.csv.gz</strong></p> <ul> <li>Description: Tidy (long format) table of counts of peptide spectral matches (PSMs) for all observed <strong>proteins</strong> for all experiments. </li> <li>Format: ExperimentID,FractionID,ProteinID,ProteinCount,spec,ExperimentID_order,FractionID_order</li> </ul> <p><strong>panplant_wide_elution_virNOG.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong></li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>panplant_wide_elution_virNOG_annot.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong>, includes annotation columns.</li> <li>Format: OrthogroupID,[Annotations],[Fractions]</li> </ul> <p><strong>panplant_wide_elution_expnorm.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles reporting per-fractionation experiment-normalized peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong></li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>panplant_wide_elution_expnorm_annot.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles reporting per-fractionation experiment-normalized peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong>, including columns with annotations</li> <li>Format: OrthogroupID,[Annotations],[Fractions]</li> </ul> <p><strong>[experiment_name].virNOG.wide.gz</strong></p> <ul> <li>Description: Elution profile of raw counts of peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong> in one experiment</li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <ul> </ul> <p><strong>[experiment_name].protcount.wide.gz</strong></p> <ul> <li>Description: Elution profile of raw counts of peptide spectral matches (PSMs) counts for all observed <strong>proteins </strong>in one experiment</li> <li>Format: ProteinID,[Fractions]</li> </ul> <p><strong>[species]_specconcat.virNOG.wide.gz</strong></p> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups </strong>from a particular species. Only present for species with more than one experiment. </li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>[species]_specconcat.protcount.wide.gz</strong></p> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>proteins</strong> from a particular species. Only present for species with more than one experiment. </li> <li>Format: ProteinID,[Fractions]</li> </ul> <p> </p> <ul> </ul> <p>Species codes</p> <p>|Code | Species | Common name | Use |<br> |---|---|---|<br> | arath | Arabidopsis Thaliana | Arabidopsis | <br> | braol | Brassica oleracea | Broccoli |<br> | cansa | Cannabis sativa | hemp | <br> | cerri | Ceratopteris richardii | C-fern | <br> | chlre | Chlamydomonas reinhardtii | Chlamydomonas |<br> | chqui | Chenopodium quinoa | Quinoa | <br> | orysj | Oryza sativa var. japonica | Rice |<br> | selml | Selaginella moellendorffii | Selaginella | <br> | sollc | Solanum lycopersicum | Tomato | <br> | wheat | Triticum Aestivum | Wheat | <br> | soybn | Glycine max | Soybean | <br> | cocnu | Cocos nucifera | Coconut | </p> <p>| maize | MAIZE | maize | </p> <p> </p>
Fig. 3 in The vascular plant diversity of Burkina Faso (West Africa) - a quantitative analysis and implications for conservation
Fig. 3. – Origin of introduced plant species in Burkina Faso. The majority of introduced species originates in the Americas.
Fig. 6 in The vascular plant diversity of Burkina Faso (West Africa) - a quantitative analysis and implications for conservation
Fig. 6. – Province species richness in relation to province characteristics. Species richness per province is shown dependent on 4 factors.
Fig. 1 in The vascular plant diversity of Burkina Faso (West Africa) - a quantitative analysis and implications for conservation
Fig. 1. – The provinces of Burkina Faso and their assignment to the phytogeographic zones used in this study. The classification of provinces to the PGZs is modified after WHITE (1983) and GUINKO (1984a). [1: Les Balé; 2: Bam; 3: Banwa; 4: Bazègua. 5: Bougouriba; 6: Boulgou; 7: Boulkiemdé; 8: Ganzourgou; 9: Gnagna; 10: Gourma; 11: Houet; 12: Ioba; 13: Kadiogo; 14: Kénédougou; 15: Comoé; 16: Komandjari; 17: Kompienga; 18: Kossi; 19: Koulpélogo; 20: Kouritenga; 21: Kourwéogo; 22: Léraba; 23: Loroum; 24: Mouhoun; 25: Nahouri; 26: Namentenga; 27: Nayala; 28: Oubritenga; 29: Oudalan; 30: Passoré; 31: Sanguié; 32: Sanmatenga; 33: Séno; 34: Sissili; 35: Soum; 36: Sourou; 37: Tapoa; 38: Tuy; 39: Yagha; 40: Yatenga; 41: Ziro; 42: Zondoma; 43: Zoundwéogo; 44: Poni; 45: Noumbiel]
Data from: Diversity among rare and common congeneric plant species from the Garry oak and Okanagan shrub-steppe ecosystems in British Columbia: implications for conservation
<p>Using universal non-coding chloroplast DNA markers (cpDNA), we investigated genetic diversity and genetic structure in four rare and common plant species pairs inhabiting threatened ecosystems (Garry Oak and Okanagan shrub-steppe) in British Columbia. <span>The species found in the Garry oak ecosystem are:</span><span> </span><em>Sanicula bipinnatifida </em><span>(purple sanicle; Apiaceae; rare),</span><span> </span><em>Sanicula crassicaulis </em><span>(Pacific sanicle; Apiaceae; common), and</span><span> </span><em>Balsamorhiza deltoidea </em><span>(deltoid balsamroot; Asteraceae; rare). The species found in the Okanagan shrub-steppe ecosystem are:</span><span> </span><em>Balsamorhiza sagittata </em><span>(arrowleaf balsamroot; Asteraceae; common),</span><span> </span><em>Orthocarpus barbatus </em><span>(Grand Coulee owl-clover; Orobanchaceae; rare),</span><span> </span><em><u>Orthocarpus </u>luteus </em><span>(yellow owl-clover; Orobanchaceae; common),</span><span> </span><em>Phacelia ramosissima </em><span>(branching phacelia; Hydrophyllaceae; rare), and</span><span> </span><em>Phacelia linearis </em><span>(thread-leaved phacelia; Hydrophyllaceae; common). </span>Eight cpDNA regions were sequenced for each study species. Sequences were aligned and concatenated within each species, and single nucleotide polymorphisms (SNPs) were used to analyze patterns of regional genetic diversity and phylogeographic structure within genera and species. Results include: total gene diversity (Ht), nucleotide diversity (π), number of private alleles, haplotype networks, isolation by distance, and analysis of molecular variance. </p> <p> </p>
Supplementary material 1 from: Bongard C, Butler K, Fulthorpe R (2013) Investigation of fungal root colonizers of the invasive plant Vincetoxicum rossicum and co-occurring local native plants in a field and woodland area in Southern Ontario. Nature Conservation 4: 55-76. https://doi.org/10.3897/natureconservation.4.3578
Supplementary material 1 from: Bongard C, Butler K, Fulthorpe R (2013) Investigation of fungal root colonizers of the invasive plant Vincetoxicum rossicum and co-occurring local native plants in a field and woodland area in Southern Ontario. Nature Conservation 4: 55-76. https://doi.org/10.3897/natureconservation.4.3578
Improving the application of Important Plant Areas to conserve threatened habitats: a case study of Uganda
<p><strong>This data set relates to the publication: Richards, S. L., Kalema, J., Ojelel, S., Williams, J., & Darbyshire, I. (2024). Improving the application of Important Plant Areas to conserve threatened habitats: A case study of Uganda. Conservation Science and Practice, e13246. https://doi.org/10.1111/csp2.13246<br></strong></p> <p><strong>Abstract:</strong></p> <p>Important Plant Areas (IPAs) are a successful method of identifying priority areas for plant conservation. Assessment of IPAs, however, often relies on criteria related to species, while incorporation of habitats has been less consistent. Using Uganda as a case study, we test the application of the threatened habitat criterion – criterion C. We identified nationally threatened habitats using Red List of Ecosystems criteria and assess, for the first time, how differing application of thresholds under IPA criterion C can influence IPA network outcomes. Eleven threatened habitats were identified, with declines switching from predominantly forest to savanna after the mid-20<sup>th</sup> century. Significantly, we found current IPA guidance on use of criterion C needlessly limits the number of sites that qualify as IPAs. The “five best sites” IPA threshold is reserved for countries where quantitative data is unavailable, however, the application of the relevant numerical thresholds (site contains ≥10% of national resource or site is among the best quality examples required to collectively prioritisie up to 20% of the national resource) to quantitative data largely generated fewer than five IPAs, comparably limiting conservation opportunities identified. We recommend, therefore, that the “five best” threshold is available for application on both qualitative and quantitative data. This will bolster the value of IPAs in conserving and restoring threatened and ecologically important habitats under the Kunming-Montreal Global Biodiversity Framework.</p> <p><strong>Dataset:</strong></p> <p>Within this dataset is a shapefile of the estimated extent of threatened habitats in Uganda. Each polygon represents a single "site" for each threatened habitat, with methodology for site identification given in the manuscript. Feature area and percentage national resource are given for each site, enabling users to identify those that trigger the different IPA criterion C thresholds.</p> <p><strong>In this study, we have preliminarily identified the threatened habitats and IPAs for Uganda. However, it is important to seek the expertise and views of stakeholders, consider other IPA criteria met and any complementarity between sites when identifying IPAs. In addition, ground-truthing or more localised data could validate the threat status of a vegetation type as well as identifying which sites are best to conserve these habitats. </strong></p>
Fig. 3 in Laboratory evaluations of the foraging success of Tamarixia radiata (Hymenoptera: Eulophidae) on flowers and extrafloral nectaries: potential use of nectar plants for conservation biological control of Asian citrus psyllid (Hemiptera: Liviidae)
Fig. 3. Choice of cups with either unscented sucrose solution or with bananascented sucrose solution made by Tamarixia radiata following a pre-test exposure to either 1.0 M sucrose solution or 1.0 M sucrose solution and banana flavor extract (G-test; ** = P ≤ 0.01; NS = not significant).
Fig. 1 in Laboratory evaluations of the foraging success of Tamarixia radiata (Hymenoptera: Eulophidae) on flowers and extrafloral nectaries: potential use of nectar plants for conservation biological control of Asian citrus psyllid (Hemiptera: Liviidae)
Fig. 1. Diagrammatic representation of nectary architectures presented to Tamarixia radiata in foraging evaluations. Location of nectaries shown in red. A. Cy- athium of euphorbiaceous species with exposed nectaries. B. Partially exposed nectaries as found in buckwheat. C. Partially hidden nectaries as found in alyssum. D. Partially exposed nectaries covered with trichomes as found in marjoram. E. Hidden nectaries as found in composites. Drawings are only indicative of size and spatial relationships and are not to scale.
Fig. 2 in Laboratory evaluations of the foraging success of Tamarixia radiata (Hymenoptera: Eulophidae) on flowers and extrafloral nectaries: potential use of nectar plants for conservation biological control of Asian citrus psyllid (Hemiptera: Liviidae)
Fig. 2. Mean (± SE) feeding time of Tamarixia radiata when presented with different concentrations of sugars commonly occurring in nectar (sucrose, fructose, glucose) and honeydew (melizitose, raffinose). Bars within the same concentration having different letters are different at P ≤ 0.05 (ANOVA).
Network analysis highlights increased generalisation and evenness of plant-pollinator interactions after conservation measures
<p><strong>DATASET used in the article entitled</strong> “Network analysis highlights increased generalisation and evenness of plant-pollinator interactions after conservation measures”.</p> <p>We supply weighted and binary matrices used for plant-pollinator network analyses, before and after the implementation of conservation measures.</p> <p>We also supply the list of plant and pollinator species recorded in this study.</p>
Figure 1 in A Damage-Limiting Method for Extracting Bark and Ambrosia Beetles (Coleoptera: Curculionidae: Scolytinae) from Their Tunnels in Host Plants of Conservation Concern
Figure 1. Use of sticky cockroach traps to extract the Hawaiian endemic bark beetle Xyleborus mauiensis Perkins, 1900, from a Hawaiian endemic olapa (Cheirodendron trigynum) tree on the island of Lanai. a: Section of sticky trap ready for action; note the glue pushed to one side of the strip to form a globule; b: Beetle stuck to the glue and extracted from the wood.
Figs. 1–2 in First high-altitude record of Bucculatrix mirnae Vargas and Moreira (Lepidoptera, Bucculatricidae) on a newly documented host plant: the importance of host plant distribution for conservation on the western slopes of the Andes mountains of northern Chile
Figs. 1–2. The habitats of Bucculatrix mirnae in the arid northern Chile. (1) The lowland Azapa Valley (type locality) located in the coastal Atacama Desert close sea level. (2) The highland neighborhood of Putre village at about 3500 m elevation on the western slopes of the Andes.
Fig. 1 in Evaluation of reduced-risk insecticides to control chilli thrips (Thysanoptera: Thripidae) and conserve natural enemies on ornamental plants
Fig. 1. Mean percentage (± SEM) of Rhaphiolepsis indica foliage with Scirtothrips dorsalis feeding damage 42 days afer insecticide treatment. Different letters indicate significant differences between treatments using Tukey-Kramer HSD means comparison (P <0.05). Cyantraniliprole low (59.1 mL per 378.5 L) and cyantraniliprole high (236.6 mL per378.5 L).
Figure S2 in Plant diversity and conservation value of wetlands along a rural-urban gradient
Figure S2. MDS ordination indicating the clear separation of the two land use groups based on the urbanisation measures.
Figure 6. A in Plant diversity and conservation value of wetlands along a rural-urban gradient
Figure 6. A, Percentage distribution of alien and indigenous species per site; B, the indigenous (ISR) and alien (ASR) species richness per site; C, the percentage of the total average cover of all alien species per site; D, the associated adjusted Floristic Quality Assessment Index values (adjFQAI) of each site; arranged along a gradient of increasing percentage urban landcover.
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