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Text-fig. 2. Species of Masillamys considered on the phylogenetic tree of theridomorphs (Vianey-Liaud and Marivaux 2017: fig. 7), within the basal Theridomorpha, before the polyphyletic genus Protadelomys. Position inferred from their dental features (see text). in A Reevaluation Of The Taxonomic Status Of The Rodent Masillamys Tobien, 1954 From Messel (Germany, Late Early To Early Middle Eocene, 48-47 M.Y.)
Text-fig. 2. Species of Masillamys considered on the phylogenetic tree of theridomorphs (Vianey-Liaud and Marivaux 2017: fig. 7), within the basal Theridomorpha, before the polyphyletic genus Protadelomys. Position inferred from their dental features (see text).
Data from: Phylogeny and systematics of the "Pronophila clade", with two new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae, Satyrinae)
<p>Analysis of a target enrichment molecular dataset confirms the monophyly of the Neotropical montane butterfly group known as the <em>Pronophila</em> Westwood clade, one of two major lineages of the satyrine subtribe Pronophilina. The <em>Pronophila </em>clade comprises 18-20 recognized genera and some 125 species. Within this group, the genus <em>Pseudomaniola</em>Röber appears as paraphyletic, and is split here into three genera, <em>Pseudomaniola </em>sensu novum<em> </em>with six species, including four previously considered as subspecies of <em>P. phaselis </em>(Hewitson), the monobasic <em>Fahraeusia </em>Pyrcz n. gen. for <em>Catargynnis asuba </em>Thieme, n. comb., and <em>Boyeriana </em>Pyrcz, Espeland & Willmott<strong> </strong>n. gen., with nine species. The adults of all three genera can be recognized by their wing colour patterns, but the strongest synapomorphies are found in the genitalia, especially those of the male, supporting the above systematic decisions. Notable differences are also found in scale organization and morphology. A divergence time analysis suggests that <em>Fahraeusia </em>diverged<em> </em>from <em>Pseudomaniola </em>+<em>Boyeriana </em>in the mid-Miocene, around 12 Mya, and the subsequent separation of the last two genera occurred at the start of the Pliocene at around 5 Mya.</p>
Molecular phylogeny of Dermestidae (Coleoptera) reveals the polyphyletic nature of Trogoderma Latreille, and the taxonomic placement of the Khapra Beetle Trogoderma granarium Everts
<p>The hide, larder and carpet beetles (Coleoptera: Dermestidae) are a family of mainly scavenger beetles, with numerous species such as the khapra beetle (<em>Trogoderma</em> <em>granarium</em> Everts, 1898), the black carpet beetle (<em>Attagenus</em> <em>unicolor</em> (Brahm, 1791)) and the hide beetle (<em>Dermestes</em> <em>maculatus</em> De Geer, 1774) being widely recognised as serious economic pests of stored products and museum collections (Fig. 1). A stable classification and reliable identification of genera and species of these pests and their 1,700 relatives are of great relevance for trade restrictions, biosecurity, pest management, forensics and biodiversity surveys.</p> <p>In this study, we examined and sequenced mitochondrial genomes of 477 dermestid specimens, representing all subfamilies and 90% of the globally recognised tribes and subtribes. Our study provides the most comprehensive, taxonomically verified and vouchered resource of mitochondrial reference sequences linked to specimen images and occurrence records of pests and their relatives, enabling eDNA surveys, metabarcoding and molecular species identification. It also reconstructs the phylogeny of Dermestidae based on molecular and morphological data for the first time, thereby providing robust phylogenetic hypotheses for a stable classification system from family to genus-level.</p> <p>Accordingly, a revised classification of Dermestidae with formal nomenclatural changes is proposed, recognising six subfamilies: Orphilinae, Trinodinae, Trogoparvinae subfam. nov. (type genus <em>Trogoparvus</em> Háva, 2001), Dermestinae, Attageninae and Megatominae. Trinodinae is recovered towards the base of Dermestidae with three tribes: Trinodini (=Trinoparvini syn. nov.), Thylodriini and Trichelodini. Dermestinae is the only subfamily with adults lacking a median ocellus, and it includes the tribes Thorictini stat. nov. (that is downgraded from Thorictinae), Marioutini and Dermestini. The endemic Australian genus <em>Derbyana</em> Lawrence and Ślipiński, was recovered within Holarctic <em>Dermestes</em> Linnaeus. Attageninae is strongly supported and includes the monogeneric Adelaidiini and polygenic Attagenini. Former subgenera of <em>Attagenus</em> Latreille, i.e., <em>Lanorus</em> Mulsant and Rey (= Paranovelsis Casey syn. nov.), <em>Telopes</em> Redtenbacher, and <em>Aethriostoma</em> Motschulsky, are elevated to generic level. The largest clade, Megatominae, is confirmed as monophyletic and is divided into three tribes: Anthrenini, Ctesiini and Megatomini. Megatomini is divided into three subtribes: Megatomina, Orphinina subtribe nov. (type genus <em>Orphinus</em> Motschulsky) and Trogodermina. Within the economically important lineage Trogodermina, <em>Trogoderma</em> Latreille, is delimited to contain only Holarctic species including the Khapra beetle <em>T</em>. <em>granarium</em> Everts, while a Southern Hemisphere clade is here recognised as <em>Eurhopalus</em> Solier in Gay, 1849 (= <em>Anthrenocerus</em> Arrow, 1915; <em>Myrmeanthrenus</em> Armstrong, 1945; <em>Neoanthrenus</em> Armstrong, 1941; <em>Sodaliatoma</em> Háva, 2013; <em>Reesa</em> Beal, 1967 syn. nov.). A revised classification of the extant genera of Dermestidae is also provided.</p>
Molecular phylogeny of Dermestidae (Coleoptera) reveals the polyphyletic nature of Trogoderma Latreille, and the taxonomic placement of the Khapra Beetle Trogoderma granarium Everts
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Data from: The Phylogeny of the Diploporita: a polyphyletic assemblage of blastozoan echinoderms
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The first phylogenetic reconstruction of Nippostrongylinae (Nematoda: Heligmonellidae) reveals 3 new genera, the polyphyletic nature of Carolinensis and Vexillata, and identifies 5 clades with varying associations with mammals
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Data from: Towards resolving and redefining Amphipyrinae (Lepidoptera, Noctuoidea, Noctuidae): a massively polyphyletic taxon
Amphipyrinae have long been a catchall taxon for Noctuidae, with most members lacking discernible morphological synapomorphies that would allow their assignment to one of the many readily diagnosable noctuid subfamilies. Here data from seven gene regions (>5,500 base pairs) for more than 120 noctuid genera are used to infer a phylogeny for Amphipyrinae and related subfamilies. Sequence data for 57 amphipyrine genera—most represented by the type species of the genus—are examined. Presented here are: the first large-scale molecular phylogenetic study of Amphipyrinae and largest molecular phylogeny of Noctuidae to date; several proposed nomenclatural changes for well supported results; and the identification of areas of noctuid phylogeny where greater taxon sampling and/or genomic-scale data are needed. Adult and larval morphology, along with life history traits, for taxonomic groupings most relevant to the results are discussed. Amphipyrinae are significantly redefined; many former amphipyrines, excluded as a result of these analyses, are reassigned to other noctuid subfamily-level taxa. Four genera, Chamaeclea Grote, Heminocloa Barnes & Benjamin, Hemioslaria Barnes & Benjamin, and Thurberiphaga Dyar are transferred to the tribe Chamaecleini Keegan & Wagner New Tribe in Acontiinae. Stiriina is elevated to Stiriinae Revised Status, Grotellina is elevated to Grotellinae Revised Status, and Annaphilina is elevated to Annaphilini Revised Status. Acopa Harvey is transferred to Bryophilinae, Aleptina Dyar is transferred to Condicinae, Leucocnemis Hampson and Oxycnemis gracillinea (Grote) are transferred to Oncocnemidinae, Nacopa Barnes & Benjamin is transferred to Noctuinae, and Narthecophora Smith is transferred to Stiriinae. Azenia Grote (and its subtribe Azeniina), Cropia Walker, Metaponpneumata Möschler, Sexserrata Barnes & Benjamin, and Tristyla Smith are transferred to Noctuidae incertae sedis. Hemigrotella Barnes & McDunnough (formerly in subtribe Grotellina) is retained in Amphipyrinae.
FIGURE 8 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 8. Environmental Scanning Electron Microscope (FEI Quanta 200) photographs of periostracum hairs on Pilosphaera and Japonia shells. A: Paratype of Pilosphaera yentoensis n. sp. NMNS5635-002 (28°18'32.7" N; 120°32' 30" E); B: Pilosphaera zebra from Nei-Hu, Taipei, Taiwan (25°5'19.1" N; 121°37'42.4" E); C: Holotype of Japonia boonkioensis n. sp.; D: Japonia formosana from in Sin-Xu, Taiwan (24°34'57.1" N; 120°52'30.0" E).
FIGURE 6 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 6. Lateral, apex and basal view of Japonia shells. A–C: Holotype of J. boonkioensis n. sp. NMNS5636-001 (23°29'31.1" N; 120°41'59.4" E); D–F: J. lanyuensis from Lan-Yu, Taiwan (22°1'41.6" N; 121°34'46.8" E); G–H: J. formosana from Sin-Xu, Taiwan (24°34'57.1" N; 120°52'30.0" E). Scale bar = 1 mm.
FIGURE 7 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 7. Living specimens of Pilosphaera and Japonia species A–B: P. yentoensis n. sp. from Yen-To town near Nan-Xi river in Zhejiang province, China (28°18'32.7" N; 120°32'30" E); C: P. zebra from Nei-Hu, Taipei, Taiwan (25°5' 19.1" N; 121°37'42.4" E); D: J. boonkioensis n. sp. NMNS5636-001 from Fen-chi-hu in Jia-i County, central Taiwan (23° 29'31.1" N; 120°41'59.4" E).
FIGURE 3 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 3. Molecular phylogenies of Cyclophoridae produced by maximum likelihood (ML) analysis of individual gene sequence data from COI (A) and 16S (B). Relative branch support indices are given as approximate likelihood ratio test. (aLRT).
FIGURE 2 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 2. Molecular phylogenies of Cyclophoridae produced by Neighbor-joining (NJ) analysis of individual gene sequence data from COI (A) and 16S (B). Relative branch support indices are given as bootstraps test consisted of 1000 iterations.
FIGURE 1 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 1. East Asia map, with sampling sites indicated. Solid asterisk and square indicated type locality of Pilosphaera yentoensis n. sp. and Japonia boonkioensis n. sp. respectively. Open circles indicate other sampling sites.
FIGURE 5 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 5. Lateral, apex and basal view of Pilosphaera shells. A–C: Holotype of Pilosphaera yentoensis n. sp. NMNS5635-001 (28°18'32.7" N; 120°32'30" E); D–F: Paratype of Pilosphaera yentoensis n. sp. NMNS5635-002 (28° 18' 32.7" N; 120°32'30" E); H–J: Pilosphaera zebra from Wu-Lai, Taipei, Taiwan (24°50'57.1" N; 121°34'11.5" E). Scale bar = 1 mm.
FIGURE 4 in Molecular evidence for a polyphyletic genus Japonia (Architaenioglossa: Cyclophoridae) and with the description of a new genus and two new species
FIGURE 4. Molecular phylogenies of Cyclophoridae produced by Bayesian analysis of individual gene sequence data from COI (A) and 16S (B). Relative branch support indices are given as Bayesian probability.
Fig. 8 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:
Fig. 8. Scale morphology of Boyeriana n. gen. (left column), and Pseudomaniola (right column): A) hairy scales among cover scales, with narrower upcurved scales in Pseudomaniola; B) cover scale ultrastructure; C) terminal, pencil-like parts of androconial scales.
Fig. 7 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:
Fig. 7. Scales of Boyeriana n. gen. (left column), and Pseudomaniola (right column): A. Organization of cover scales in the median part of the forewing upperside; B. unique morphotype of cover scales in Boyeriana and 2 morphotypes of cover scales in Pseudomaniola, with visible hair-like and androconial scales; C. cover scales.
Fig. 5 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:
Fig. 5. Male genitalia (lateral view), aedeagus (lateral and dorsal view): A) Fahraeusia asuba (prep. genit. H367), B) Pseudomaniola gigas (prep. genit. n/n), C) Pseudomaniola macasica (prep. genit. H361), D) Pseudomaniola phaselis (prep. genit. H359), E) Pseudomaniola pholoe (prep. genit. H362), F) Pseudomaniola argyritis (prep. genit. H7742).
Fig. 2 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:
Fig. 2. Divergence timing hypothesis inferred from Bayesian analysis of a reducedTE dataset in BEAST2.
Fig. 3 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:
Fig. 3. Adults (ventral view, except A and C—dorsal view): A) Fahraeusia asuba male (S Ecuador, Morona-Santiago), B) Fahraeusia asuba male (S Ecuador, Morona-Santiago), C) Fahraeusia asuba female (S Ecuador, Zamora-Chinchipe), D) Fahraeusia asuba female (S Ecuador, Zamora-Chinchipe), E) Pseudomaniola gigas male (S Mexico,Oaxaca), F) Pseudomaniola rogersi male (Costa Rica,Talamanca),G) Pseudomaniola phaselis male (NVenezuela,Vargas),H) Pseudomaniola pholoe male (W Colombia,Valle).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.