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52 results for “posterior probability”
FI GU R E 3 Maximum likelihood phylogenetic tree of the Hyalospheniformes with a focus on Apodera, Alocodera, and Padaungiella based on COI gene sequences. Bootstrap values (bs) and Bayesian posterior probabilities (p.p.) are indicated respectively between branches. COI sequences from genera other than Apodera were retrieved from GenBank in Superficially described and ignored for 92 years, rediscovered and emended: Apodera angatakere (Amoebozoa: Arcellinida: Hyalospheniformes) is a new flagship testate amoeba taxon from Aotearoa (New Zealand)
FI GU R E 3 Maximum likelihood phylogenetic tree of the Hyalospheniformes with a focus on Apodera, Alocodera, and Padaungiella based on COI gene sequences. Bootstrap values (bs) and Bayesian posterior probabilities (p.p.) are indicated respectively between branches. COI sequences from genera other than Apodera were retrieved from GenBank
Frasnian, lateral (B1), ventral (B2), anterior (B3), posterior (B4), and dorsal (B5) views of a rounded exfoliated shell, 27.7 mm wide, 25.6 mm long, and about 14.5 mm thick. C. PUM05008, sample PY4, Panxi section, probably Middle Frasnian, lateral (C1), dorsal (C2), and ventral (C3) views of the sectioned specimen (Fig. 6). D. PUM05009, sample PY5, Panxi section, probably Middle Frasnian, ventral beak broken, showing small conjunct deltidial plates (note that true foramen (approximately dashed line) takes up only a small part at the bottom of the seen later enlarged hole). E. PUM05010, sample PY5, Panxi section, probably Middle Frasnian, posterior (E1), lateral (E2), anterior (E3), ventral (E4), and dorsal (E5) views, 26.7 mm wide, 27.7 mm long, 18.5 mm thick, adpressed ventral beak. F. PUM05011, sample GC22, Caiziyan section, Early Frasnian, dorsal view. in Early and Middle Frasnian brachiopod faunas and turnover on the South China shelf
Frasnian, lateral (B1), ventral (B2), anterior (B3), posterior (B4), and dorsal (B5) views of a rounded exfoliated shell, 27.7 mm wide, 25.6 mm long, and about 14.5 mm thick. C. PUM05008, sample PY4, Panxi section, probably Middle Frasnian, lateral (C1), dorsal (C2), and ventral (C3) views of the sectioned specimen (Fig. 6). D. PUM05009, sample PY5, Panxi section, probably Middle Frasnian, ventral beak broken, showing small conjunct deltidial plates (note that true foramen (approximately dashed line) takes up only a small part at the bottom of the seen later enlarged hole). E. PUM05010, sample PY5, Panxi section, probably Middle Frasnian, posterior (E1), lateral (E2), anterior (E3), ventral (E4), and dorsal (E5) views, 26.7 mm wide, 27.7 mm long, 18.5 mm thick, adpressed ventral beak. F. PUM05011, sample GC22, Caiziyan section, Early Frasnian, dorsal view.
Figure 2. Bayesian posterior probability 50 in Population genetic structure and demographic history of the Chinese endemic Mongoloniscus sinensis (Dollfus, 1901) (Isopoda: Oniscidea)
Figure 2. Bayesian posterior probability 50% majority-rule consensus tree of the M. sinensis haplotypes. Out-group was Ligia occidentalis; the map showed mitochondrial haplotype clades of Porcellio gigliotose and Trachelipus semiproiectus. The numbers above joints are the bootstrap support values of MP value, ML value, and the posterior probabilities of the BI tree, respectively (MP/ML/BI).
Text-fig. 12. Lower molars of (a) Omanitherium dhofarense and (b) Moeritherium chehbeurameuri. a) stereo occlusal views of ONHM TN 2017-50, posterior lophid of an unworn right lower molar, probably m/2, from Mohammed's molar site, Dhofar, Oman, b) stereo occlusal views of MNHN 1890-14, left lower molar from "Khenchella", Algeria (note the longitudinal sulcus in the centre-line of the tooth of Moeritherium and its absence in Omanitherium). Arrows show the course of the sulcus in the molar from "Khenchella" (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 12. Lower molars of (a) Omanitherium dhofarense and (b) Moeritherium chehbeurameuri. a) stereo occlusal views of ONHM TN 2017-50, posterior lophid of an unworn right lower molar, probably m/2, from Mohammed's molar site, Dhofar, Oman, b) stereo occlusal views of MNHN 1890-14, left lower molar from "Khenchella", Algeria (note the longitudinal sulcus in the centre-line of the tooth of Moeritherium and its absence in Omanitherium). Arrows show the course of the sulcus in the molar from "Khenchella" (scale bar 10 mm).
Figure 2. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 2. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 2. - Bayesian (GTR+Γ+I and HKY+Γ models) and maximum likelihood 50% majority-rule consensus tree. Numbers in the nodes represent posterior probabilities (GTR+Γ+I and HKY+Γ, respectively), and bootstrap value for maximum likelihood and parsimony analyses, respectively. c1–Bragança, Pará; c2–Santa Maria do Pará, Pará; c3–National Forest of Amapá, Amapá; c4–Belém, Pará; i1–Solimões River, near Manaus, Amazonas; i2–Xingu River, Altamira, Pará; i3 and i4–Itacoatiara, Amazonas. MYBP–million years before present.
Figure 2. - Bayesian (GTR+Γ+I and HKY+Γ models) and maximum likelihood 50% majority-rule consensus tree. Numbers in the nodes represent posterior probabilities (GTR+Γ+I and HKY+Γ, respectively), and bootstrap value for maximum likelihood and parsimony analyses, respectively. c1–Bragança, Pará; c2–Santa Maria do Pará, Pará; c3–National Forest of Amapá, Amapá; c4–Belém, Pará; i1–Solimões River, near Manaus, Amazonas; i2–Xingu River, Altamira, Pará; i3 and i4–Itacoatiara, Amazonas. MYBP–million years before present.
Figure 4. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI and 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 4. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI and 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 3. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 3. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 1. - Bayesian phylogeny of Euptychia based on one mitochondrial (COI) and one nuclear (EF1-a) gene. Posterior probabilities are listed above and bootstrap values below branches. A dash denotes bootstrap support lower than 50%. (Euptychiaattenboroughi is not included in the analysis – see text for details.)
Figure 1. - Bayesian phylogeny of Euptychia based on one mitochondrial (COI) and one nuclear (EF1-a) gene. Posterior probabilities are listed above and bootstrap values below branches. A dash denotes bootstrap support lower than 50%. (Euptychiaattenboroughi is not included in the analysis – see text for details.)
FIGURE 7. Phylogenetic tree from Bayesian analysis. Thick branches indicate posterior probabilities over 80 in Revision of the Ranitomeya fantastica species complex with description of two new species from Central Peru (Anura: Dendrobatidae)
FIGURE 7. Phylogenetic tree from Bayesian analysis. Thick branches indicate posterior probabilities over 80.
FIGURE 1. Bayesian tree inferred from SSU gene DNA sequences. Posterior probabilities exceeding 50 in A review of the genus Tripylina Brzeski, 1963 (Nematoda: Triplonchida), with descriptions of five new species from New Zealand
FIGURE 1. Bayesian tree inferred from SSU gene DNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species, GenBank numbers, locations are listed for each taxon if known.
FIGURE 2. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50 in A review of the genus Tripylina Brzeski, 1963 (Nematoda: Triplonchida), with descriptions of five new species from New Zealand
FIGURE 2. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species, GenBank numbers, locations are listed for each taxon if known.
FIGURE 6. Our Bayesian phylogenetic hypothesis. Thicker branches represent posterior probabilities greater than 80 in Complicated histories: three new species of poison frogs of the genus Ameerega (Anura: Dendrobatidae) from north-central Peru
FIGURE 6. Our Bayesian phylogenetic hypothesis. Thicker branches represent posterior probabilities greater than 80 (nodes of particular interest to this study are labeled with observed posterior probabilities). Ameerega ignipedis sp. nov., A. yoshina sp. nov., and A. pepperi sp. nov. are highlighted with green, orange and red boxes, respectively. Since this study focused on the bassleri and petersi clades, to simplify visualization of the tree we reduced individuals of other species of Ameerega and other genera to a single representative (reducing the number of terminals to 76 from 135, and in every case, each clade comprised a monophyletic lineage).
FIGURE 5 Bayesian phylogenetic tree inferred from SSU gene DNA sequences. Posterior probabilities great than 50 in New Zealand species of the genus Tripyla Bastian, 1865 (Nematoda: Triplonchida: Tripylidae). I: A new species, a new record and key to long-tailed species
FIGURE 5 Bayesian phylogenetic tree inferred from SSU gene DNA sequences. Posterior probabilities great than 50% are given on appropriate clades. Nematode species, GenBank numbers, locations are listed for each taxon if known.
FIGURE 6 Bayesian phylogenetic tree inferred from LSU gene DNA sequences. Posterior probabilities greater than 50 in New Zealand species of the genus Tripyla Bastian, 1865 (Nematoda: Triplonchida: Tripylidae). I: A new species, a new record and key to long-tailed species
FIGURE 6 Bayesian phylogenetic tree inferred from LSU gene DNA sequences. Posterior probabilities greater than 50% are given on appropriate clades. Nematode species, GenBank numbers, locations are listed for each taxon if known.
FIGURE 6. Bayesian inference tree derived from 16S rRNA for all species. The nodal numbers are posterior probability values. Only values above 50 in Cophecheilus bamen, a new genus and species of labeonine fishes (Teleostei: Cyprinidae) from South China
FIGURE 6. Bayesian inference tree derived from 16S rRNA for all species. The nodal numbers are posterior probability values. Only values above 50% are given.
FIGURE 3 Bayesian tree inferred from SSU gene rDNA sequences. Posterior probabilities exceeding 50 in A review of the genus Trischistoma Cobb, 1913 (Nematoda: Enoplida), with descriptions of four new species from New Zealand
FIGURE 3 Bayesian tree inferred from SSU gene rDNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species, GenBank numbers are listed for each taxon.
FIGURE 4 Bayesian tree inferred from LSU gene rDNA sequences. Posterior probabilities exceeding 50 in A review of the genus Trischistoma Cobb, 1913 (Nematoda: Enoplida), with descriptions of four new species from New Zealand
FIGURE 4 Bayesian tree inferred from LSU gene rDNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species and GenBank numbers are listed for each taxon if known.
FIGURE 4. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50 in Laimaphelenchus persicus n. sp. (Nematoda: Aphelenchoididae) from Iran
FIGURE 4. Bayesian tree inferred from LSU gene DNA sequences. Posterior probabilities exceeding 50% are given on appropriate clades. Nematode species and GenBank numbers are listed for each taxon.
FIGURE 4. Bayesian posterior probability tree was reconstructed from 16S in A new species of Kaloula (Amphibia: Anura: Microhylidae) from southern Guangxi, China
FIGURE 4. Bayesian posterior probability tree was reconstructed from 16S ribosomal RNA mitochondrial gene sequences with Metaphrynella pollicaris, Metaphrynella sundana and Phrynella pulchra as outgroups. Maximum-likelihood tree produced near-identical topology. Two reliability indices are given on nodes: the Bayesian posterior probabilities/the maximum likelihood bootstrap percentages. Symbol (*) indicates nodes with good bootstrap supports for ML (>80%) inferences and Bayesian posterior probabilities (BPP> 95%), and symbol (-) represents that node values are less than 60%.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.