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15
datasets available to search
ShareScore release 0.9.0
Dataset results
15 results for “prion-like domain”
Rotational electron diffraction patterns of TIA-1 prion-like domain, A381T mutant
<p>Rotational electron diffraction patterns of TIA-1 prion-like domain, A381T mutant. Collected with a JEOL CRYO ARM 300 electron microscope operated at an accelerating voltage of 300kV on a DirectElectron DE64 detector at RIKEN, SPring-8 Center. The PDB ID associated with this data is 7VI5.The PDB ID associated with this data is 7VI4.</p>
Rotational electron diffraction patterns of TIA-1 prion-like domain, wild type
<p>Rotational electron diffraction patterns of TIA-1 prion-like domain, wild type. Collected with a JEOL CRYO ARM 300 electron microscope operated at an accelerating voltage of 300kV on a DirectElectron DE64 detector at RIKEN, SPring-8 Center. The PDB ID associated with this data is 7VI5.</p>
ELF3 prion-like domain Martini clustering simulations
<p>This dataset contains Martini coarse-grain simulations of ELF3-PrD, with each simulation containing 100 PrD monomers. These trajectories were created as part of a publication exploring the temperature-responsive condensation of the ELF3-PrD in the scientific pulication titled, "Molecular dynamics simulations illuminate the role of sequence context in the ELF3-PrD-based temperature sensing mechanism in plants." Included are trajectories for ELF3-PrD variants including wildtype (7 glutamine-long polyQ tract), 0Q (variable poly-glutamine tract removed), 19Q (polyQ tract extenden to 19 glutamine residues) and the F527A mutant. Each variant includes trajectories at 290K, 300K, 320K and 405K. There are three replicates for each condition, except for wildtype 300K and 19Q 340K, of which two replicates are provided.</p>
ELF3 prion-like domain REST2 simulation trajectories
<p>This dataset contains ELF3 prion-like domain (PrD) trajectories obtained with replica exchange with solute tempering (REST2). These trajectories were created as part of a publication exploring the temperature-responsive condensation of the ELF3-PrD in the scientific pulication titled, "Molecular dynamics simulations illuminate the role of sequence context in the ELF3-PrD-based temperature sensing mechanism in plants." Included are trajectories for ELF3-PrD variants including wildtype, 0Q (variable poly-glutamine tract removed), and an F527A mutant, each at a range of temperatures between 290K and 405K.</p>
Expanding molecular grammar of polar residues and arginine in FUS prion-like domain
<p>Codes to reporoduce simualtion results presented in the paper "Expanding molecular grammar of polar residues and arginine in FUS prion-like domain". </p> <p>Simulation_Codes.zip - Contains python codes for calcualtion of contacts, intrachain distances and angle-distance probability distributions along with files to check the output of the codes. </p> <p>ThT_Assay_Fitting_Scripts.zip - Contains scripts to fit ThT curve.</p>
Cancer-specific retargeting of BAF complexes by a prion-like domain [RNA-Seq]
GEO Series GSE94277. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing.
mRNA expression and translation regulated by the prion-like domain of Ilf3 in the mouse amygdala under chronic stress
GEO Series GSE209902. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
Defining RNA oligonucleotides that reverse deleterious phase transitions of RNA binding proteins with prion-like domains
GEO Series GSE249059. Escherichia coli. 4 samples. Type: Other.
Activation and memory of the heatshock response is mediated by Prion-like domains in Arabidopsis [RNA-seq]
GEO Series GSE260655. Arabidopsis thaliana. 42 samples. Type: Expression profiling by high throughput sequencing.
Cancer-specific retargeting of BAF complexes by a prion-like domain [ChIP-Seq]
GEO Series GSE94275. Homo sapiens. 43 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The mutational landscape of a Prion-like domain
GEO Series GSE128165. Saccharomyces cerevisiae. 23 samples. Type: Other.
Activation and memory of the heatshock response is mediated by Prion-like domains in Arabidopsis [ChIP-seq]
GEO Series GSE260654. Arabidopsis thaliana. 72 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cancer-specific retargeting of BAF complexes by a prion-like domain [ATAC-Seq]
GEO Series GSE94272. Homo sapiens. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cancer-specific retargeting of BAF complexes by a prion-like domain
GEO Series GSE94278. Homo sapiens. 85 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
RNA-Seq and ChIP-Seq profiling of ELF3, an prion-like domain-containig in ELF3 that functions as a thermosensor in Arabidopsis.
GEO Series GSE137264. Arabidopsis thaliana. 64 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.