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706 results for “protected area”
Water, Soil, Floc, Plant Total Phosphorus, Total Carbon, and Bulk Density data (FCE) from Everglades Protection Area (EPA) from 2004 to 2016
These data are a compillation of data from multiple sources including South Florida Water Management District (SFWMD) DBhydro web database, United States Environment Protection Agency Regional, Environmental Monitoring and Assessment (REMAP), Everglades Soil Mapping (ESM), and Florida Coastal Everglades Long Term Ecological Research (FCE-LTER). The matrix of these data were compiled for soil, surface water, floc, and plants where the nutrients are counted for total phosphorus, total carbon, and bulk density. When downloading the data from DBhydro, only regularly collected samples (SAMP) were included these data. As per DBhydro metadata, the regular samples were collected monthly by grab method throughout the year from 2004 to 2016 for SFWMD monitoring stations across the EPA. All flagged and field quality controlled values were excluded to avoid the duplication of data. In order to maintain the quality assurance/ quality control (QA/QC) the method detection limit for water TP was fixed at 2 µg/L by the SFWMD. This data set were used to assess the decadal trend of TP concentration in surface water and soil in EPA. Available data from 2004 to 2014 was collected for soils and from 2004 to 2016 for water to understand a decade of trends. Both Geographic Information System (GIS) and statistical data analysis were applied to determine changes in water quality and soil chemistry. These data are the basis for Shishir Sarker's Master's thesis.
Soil biogeochemical measurements from the Antarctic Specially Protected Area No. 131 (ASPA 131), McMurdo Dry Valleys Antarctica, December 2022
These data include soil biological properties (16S ASV community sequences, invertebrate community counts, ash-free dry mass, pigment concentrations), physical properties (location, gravimetric soil moisture, pH, electrical conductivity, remote detection of soil moisture change), chemical properties (dissolved inorganic nitrogen, extractable sulfate ions, extractable Cl ions) from soils collected within the Antarctic Specially Protected Area No. 131 (ASPA-131) surrounding Canada Stream in the McMurdo Dry Valleys of Antarctica. Collection sites were associated with a warming event that occurred on March 22, 2022, and include the following remotely-sensed categories: V - validation sites representing arid soils with little soil moisture and minimal detectable change in liquid water, S - significant sites that had a significant increase in liquid water, and N - nonsignificant sites that had detectable moisture but did not experience a significant increase in liquid water. These data aid in our understanding of how landscape heterogeneity and hydroclimate variability influence soil biota communities sensitive to changes in liquid water availability in a polar desert.
Dataset for Sandboxing use case SUC2 related to cyber attacks affecting Wide Area Protection
<p><span>This dataset is related to the operation of the second KIOS CoE sandboxing use case (SUC2) which inclused 3 scenarios (S1-S3) which examins the behavious a WAP scheme of power grids in case of a short circuit fault and in case of two types of cyber attacks. The description of the architecture of the University of Cyprus/ KIOS CoE sandboxing environmnet used for extracting these datasets along with the full list of scenarios and their detailed implementation are described in the supporting documents.</span></p> <p><span>Brief description of each of the 3 scenarios of this SUC2 are provided below.</span></p> <p><span>The datasets for the first scenario (S1) of SUC2</span><span> examines the operation of a wide area protection scheme in a transmission line which receives data sent from PMUs at the two ends of the lines, when a short-circuit fault occurred in the range of the transmission line between buses 7 and 8 of the system. More details about the scenario SUC2/S1 related to this scenario's dataset can be found in Section </span><span>1.3.1</span><span> of the SUC2 supporting document. </span><span><span>The dataset includes electrical measurements of the current flow in line 7-8 (of the IEEE 9-bus system), in both magnitude and sinusoidal form</span><span>.</span><span> The dataset is provided in the form of time-series measurements available as MATLAB (.mat) and CSV files, which were recorded with a 30-second and 40-second time resolution, respectively. The measurements of RMS values were recorded by the Typhoon controller as they were sent by the two PMUs, while the sine wave measurements were recorder through the OPAL-RT</span></span></p> <p><span>The datasets for second scenario (S2) of SUC2 investigates the operation of a wide area protection scheme which receives data sent from PMUs when a MITM FDI cyber-attack is conducted on the measurements of bus 7</span><span>, virtually implemented within the sandboxing, and introduces a multiplicative change to the current measurements before they are received by the Typhoon controller via IEEE C37.118 protocol</span><span>. Section 1.3.2 of the SUC2 supporting document provides more details about the scenario related to this dataset. </span><span>This dataset includes electrical measurements of the current flow, in magnitude and sinusoidal format, of the transmission line between buses 7 and 8 of the <span>digital twin of the IEEE 9-bus system.</span> The dataset is provided in the form of time-series measurements available as MATLAB (.mat) and CSV files which were recorded with a 30-second and 40-second time resolution, respectively. The measurements of magnitude values were recorded by the Typhoon controller, while the data from the sinusoidal waveform were recorder by OPAL-RT. </span></p> <p><span>Thie dataset of the SUC2/S3 examines the operation of a wide area protection scheme which receives data sent from PMUs when a combined MITM with DoS cyber-attack is conducted, as actual attack, in the isolated communication network of the sandboxing environment, disrupting the C37.118 UDP communication exchanged between OPAL-RT 5707, where the digital twin of IEEE 9-bus system was implemented, and Typhoon controller. More details about this scenario associated to this dataset can be found in Section </span><span>1.3.3<span></span></span><span> of the supporting document of SUC2.</span></p> <p><span>This dataset includes electrical measurements of current’s flow magnitude of the transmission line between buses 7 and 8 of the <span>digital twin of the IEEE 9-bus system.</span> The dataset was recorded by the Typhoon controller, and it is provided in the form of time-series measurements available as MATLAB (.mat) and CSV files which were recorded with a 30-second and 40-second time resolution, respectively. In addition, the dataset includes network traffic packets captured as .pcapng<span> </span>and .csv files. <span> </span></span></p>
Navigating protected areas networks for improving diffusion of conservation practices
<p>The Natura 2000 protected area network is the cornerstone of European Union's biodiversity conservation strategy. These protected areas range across multiple biogeographic regions, and they include a diversity of species assemblages along with a diversity of managing organizations, altogether making difficult to pool relevant sites to facilitate the flow of knowledge significant to their management. Here we introduce an approach to navigating protected area networks that has the potential to foster systematic identification of key sites for facilitating the exchange of knowledge and diffusion of information within the network. To demonstrate our approach, we abstractly represented Romanian Natura 2000 network as a co-occurrence network, with individual sites as nodes and shared species as edges, further combining into our analysis network topology, community detection, and network reduction methods. We identified most representative Natura 2000 sites that may increase the transfer of information within the national network of protected areas, detected clusters of sites and key sites for maintaining network cohesiveness, and highlighted the subsample of sites that retain the characteristics of the entire network. Our analysis provides implications for protected area prioritization by proposing a network perspective approach to collaboration rooted in ecological principles.</p>
Protected planet (protected areas), forests and intact forest landscapes at 100 m, 250 m to 1 km resolution
<p><a href="https://www.protectedplanet.net/en/thematic-areas/wdpa?tab=WDPA">Protected planet</a> (protected areas; version Oct 2024) and <a href="https://intactforests.org/data.ifl.html">intact forest landscapes</a> (2000, 2013, 2016 and 2020) rasterized to 100 m, 250 m and 1 km resolutions. The aggregated map contains all pixels that are either protected or intacts. To use these resources please refer to original data producers:</p> <ul> <li>Defourny, P., Lamarche, C., Bontemps, S., De Maet, T., Van Bogaert, E., Moreau, I., Brockmann, C., Boettcher, M., Kirches, G., Wevers, J., Santoro, M., Ramoino, F., & Arino, O. (2017). Land Cover Climate Change Initiative - Product User Guide v2. Issue 2.0. <a href="http://maps.elie.ucl.ac.be/CCI/viewer/download/ESACCI-LC-Ph2-PUGv2_2.0.pdf">http://maps.elie.ucl.ac.be/CCI/viewer/download/ESACCI-LC-Ph2-PUGv2_2.0.pdf</a></li> <li>Olsson, E., Albrecht, R., & Golden Kroner, R.E. (2021). PADDDtracker Data Release Version 2.1: Technical Notes. Conservation International, Arlington, VA. DOI: 10.5281/zenodo.4749615.</li> <li>Potapov, P., Hansen, M. C., Laestadius L., Turubanova S., Yaroshenko A., Thies C., Smith W., Zhuravleva I., Komarova A., Minnemeyer S., Esipova E. The last frontiers of wilderness: Tracking loss of intact forest landscapes from 2000 to 2013. <a href="http://advances.sciencemag.org/content/3/1/e1600821">Science Advances, 2017; 3:e1600821</a></li> <li>UNEP-WCMC and IUCN (2024), Protected Planet: The World Database on Protected Areas (WDPA) [Online], October 2024, Cambridge, UK: UNEP-WCMC and IUCN. Available at: <a title="Visit Protected Planet" href="http://protectedplanet.net/" target="_blank" rel="noopener">www.protectedplanet.net</a>.</li> </ul> <p>The time-series of forest areas (<strong>forest.areas_esa.cci_p</strong>) are based on the <a href="https://climate.esa.int/en/odp/#/project/land-cover">ESA CCI Land Cover time-series</a> (2000–2022) 300-m resolution data; also available at 1-km resolution based on "average" resampling. Two maps (<strong>forest.cover.sum_esa.cci_p_250m</strong> and <strong>forest.cover.diff_esa.cci_p_250m</strong>) show long term cumulative forest cover and difference in forest cover for 2022 vs 2000.</p> <p>The protected planet areas and intact forest landscapes were rasterized using:</p> <pre><code>## https://www.protectedplanet.net/en/thematic-areas/wdpa?tab=WDPA for(j in 0:2){ system(paste0('gdal_rasterize -ot Byte -a_nodata 0 -burn 100 -where "IUCN_CAT LIKE \'I%\'" /data/CCI_LandCover/WDPA_Oct2024_Public_shp_', j, '/WDPA_Oct2024_Public_shp-polygons.shp WDPA_Oct2024_Public_shp_', j, '_1km.tif -tr 0.008333333 0.008333333 -te -180 -65.00208 180 87.37 -co COMPRESS=DEFLATE -a_srs EPSG:4326')) } s = sds(rast("WDPA_Oct2024_Public_shp_ALL_0_1km.tif"), rast("WDPA_Oct2024_Public_shp_ALL_1_1km.tif"), rast("WDPA_Oct2024_Public_shp_ALL_2_1km.tif")) dg.x = app(s, fun=max, na.rm=TRUE, cores = 32) dg.x0 = terra::ifel(is.na(dg.x), 0, dg.x, filename="protected.areas_wdpa.all_p_1km_s_2023_2024_go_epsg4326_v20241025.tif", wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT2S'), overwrite=TRUE) ## https://intactforests.org/data.ifl.html for(j in c(2000,2013,2016,2020)){ system(paste0('gdal_rasterize -ot Byte -a_nodata 0 -burn 100 -l \"ifl_', j, '\" /mnt/lacus/raw/protectedplanet/ifl_', j, '.shp intact.forest_gfw_p_1km_s_', j, '0101_', j, '1231_go_epsg4326_v20241025.tif -tr 0.008333333 0.008333333 -te -180 -65.00208 180 87.37 -co COMPRESS=DEFLATE -a_srs EPSG:4326')) } ## Combination IFL & WPDA b = sds(rast("protected.areas_wdpa.all_p_1km_s_2023_2024_go_epsg4326_v20241025.tif"), rast("intact.forest_gfw_p_1km_s_20200101_20201231_go_epsg4326_v20241025.tif")) bg.x = app(b, fun=max, na.rm=TRUE, cores = 32) bg.x0 = terra::ifel(is.na(bg.x), 0, bg.x, filename="protected.intact.areas_wdpa.ifl_p_1km_s_2020_2024_go_epsg4326_v20241025.tif", wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT2S'), overwrite=TRUE)</code></pre>
Data from: Will Current Protected Areas Harbour Refugia for Threatened Arctic Vegetation Types until 2050? A First Assessment
<p>We present predictions of Arctic vegetation for 2050 based on a combination of climate models (namely, EC-Earth3-Veg, IPSL-CM6A-LR, and MRI-ESM2-0), emission scenarios (names, SSP126 and SSP585) and tree dispersal rate scenarios (unrestricted, 20km and 5km) based on the methods of Pearson et al. (2013) and the new raster version of the Circumpolar Arctic Vegetation Map (CAVM) (Raynolds et al. 2019). We additionally present a dataset summarising total areas for each vegetation type in the CAVM and the forecasted models based on the computation of zonal histograms in ArcGIS (zonal_histogram_results.csv), for the total Arctic as well as only within protected areas, defined by the Map of Arctic Protected Areas (CAFF and PAME 2017). We also present a potential map of refugia for what we deem the realistic model (IPSL, SSP585, 20 km tree dispersal) as a raster file. Refugia were identified as regions where the vegetation remained the same between the CAVM and the predictions. Additionally, we present a map of model agreement, showing the degree to which other models agree with the vegetation classification for our refugia.</p> <p>All predictions named according to the tree dispersal rate, climate model, and emissions scenario, preceded by the term "pred". For example: "pred_unres_mri_585" represents the unrestricted tree dispersal, MRI-ESM-0 climate model, and SSP585 scenario-based prediction. The MRI-ESM-0 x SSP585 combination had gaps in data which results in a lack of predictions in some areas; this affects 3 models.</p> <p>Further details and all code associated with these datasets are found <a href="https://github.com/PlekhanovaElena/Arctic_vegetation_prediction">here</a>.</p>
Phenological metrics for Protected Area "BayerischerWald", MODIS aqua tile h18v04
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "Donana", MODIS terra tile h17v05
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "Samaria", MODIS terra tile h19v05
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "SierraNevadaEcosystem", MODIS aqua tile h17v05
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "NorthernLimestone", MODIS terra tile h18v04
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "DanubeDelta", MODIS terra tile h20v04
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "Hardangervidda-h18v03", MODIS aqua tile h18v03
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "WaddenSea", MODIS aqua tile h18v03
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "PenedaGeres", MODIS terra tile h17v04
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
Phenological metrics for Protected Area "MurgiaAltaPark", MODIS aqua tile h19v04
Phenological metrics derived from satellite data by use of R-package "phenex" (Lange (2017)). NDVI is filtered by modified BISE algorithm (see Viovy (1992)). NDVI curve is modelled with method DLogistic (see Doktor (2017), Lange (2017)). Phenological metrics include: (1) Start of season / green-up (GU); (2) End of season / senescence (SEN); (3) Length of vegetation period (VP); (4) GPP proxy (integral over vegetation period, GSIVI); (5) minimum NDVI (MinNDVI); (6) maximum NDVI (MaxNDVI); (7) day of minimum NDVI as julian date (MinDOY); (8) day of maximum NDVI as julian date (MaxDOY); (9) r-square of modelled NDVI curve; (1)-(4) are derived by using local threshold (LT) and global threshold (GT) method (see Doktor (2017), Lange (2017)). (1)-(6) include mean and standard deviation; References: [Viovy 1992]: Viovy N, Arino O, Belward A (1992) The Best Index Slope Extraction (BISE): A method for reducing noise in NDVI time-series. International Journal of Remote Sensing 13(8):1585–1590; [Doktor 2017]: Doktor D, Lange M (2017) Disparate applicability and broad spatio-temporal satellite resolution affects extracted trends of European spring phenology for 1989-2007. In preparation for Global Ecology and Biogeographie; [Lange 2017]: Lange M, Doktor D (2017) phenex: Auxiliary Functions for Phenological Data Analysis. R package version 1.4-5, https://CRAN.R-project.org/package=phenex, Last accessed on 2017-05-29;
FESOM-REcoM model data: Severe 21st-century ocean acidification in Antarctic Marine Protected Areas
<p>This repository contains all post-processed model output used in the paper "Severe 21st-century ocean acidification in Antarctic Marine Protected Areas". It contains the data underlying the figures in the paper, such as regional averages, as well as masks for the marine protected areas and the grid information file of the original model output.</p><p>The data were created using python scripts provided at <a href="https://doi.org/10.5281/zenodo.10295920">https://doi.org/10.5281/zenodo.10295920</a>. </p><p>Original model output, including full fields of computed pH and saturation states with respect to aragonite and calcite, is available at the World Data Center for Climate (WDCC) under the following DOIs:</p><ul><li>simA, historical: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_hist_vA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_hist_vA_vC</a></li><li>simA, ssp126: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s126_vA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s126_vA_vC</a></li><li>simA, ssp245: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s245_vA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s245_vA_vC</a></li><li>simA, ssp370: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s370_vA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s370_vA_vC</a></li><li>simA, ssp585: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s585_vA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_A_s585_vA_vC</a></li><li>simB: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_B_1921_cA_cC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_B_1921_cA_cC</a></li><li>simC, historical: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_hist_vA_cC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_hist_vA_cC</a></li><li>simC, ssp245: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_s245_vA_cC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_s245_vA_cC</a></li><li>simC, ssp585: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_s585_vA_cC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_C_s585_vA_cC</a></li><li>simC, historical: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_D_hist_cA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_D_hist_cA_vC</a></li><li>simC, ssp585: <a href="https://doi.org/10.26050/WDCC/FESOM14-REcoM2_D_s585_cA_vC">https://doi.org/10.26050/WDCC/FESOM14-REcoM2_D_s585_cA_vC</a></li></ul><p> </p>
Shapefiles showing the locations of long-term climate change refugia and hotspots identified in the FairSeas report "A Climate Resilient Path for Ireland's Marine Protected Areas Network"
<p>Shapefiles created for the report "A Climate Resilient Path for Ireland’s Marine Protected Areas Network", an addendum chapter to "Revitalising Our Seas report: Identifying<br>Areas of Interest for Marine Protected Area Designation in Irish Waters"</p> <p>These shapefiles summarise long-term patterns that emerge from the spatial-meta analysis of physical-biogeochemical and species distribution modelling data, providing an overview of the distribution of climate change refugia and climate change hotspots across Ireland's National Marine Planning Framework between 2026 - 2069, and across the two emissions scenarios considered in the report (RCP4.5 and RCP8.5). </p> <p>Filenames refer to the specific analysis each set of shapefiles belong to: Benthic habitats, benthic megafauna, pelagic habitats, pelagic megafauna and forage fish. Details of the modelling datasets used in each of these analyses, the meta-analysis method and shapefile creation can be found in Annex A1 in the report "A Climate Resilient Path for Ireland’s Marine Protected Areas Network".</p>
Replication data for "The uncertain future of protected lands and waters" - protected area base layer for Amazonia
<p>We created a database of terrestrial and coastal protected areas (PAs) for all nine Amazonian countries following the IUCN definition for PAs and including only state-designated and state-managed PAs. We used the best available sources of archival data, including original legal documents, to confirm information about PAs. We included PAs that currently exist, as well as those that existed previously but have been degazetted. We note that this database differs from the World Database of Protected Areas (WDPA) for several reasons:</p> <p>• we focus on nationally-designated PAs and omit international or local designations</p> <p>• we include previously protected areas</p> <p>• we exclude other area-based conservation interventions other than state-designated and state-managed PAs (such as indigenous lands, privately protected areas, recreational sites, and community based natural resource management areas) which are included in the WDPA in certain countries</p> <p>• We use the establishment date as provided in each PA’s gazettement legal document, rather than the Status Year field in the WDPA, which lists the year that the PA’s current designation was established (46)</p> <p>• We use the spatial extent as provided in each PA’s gazettement legal document, rather than the spatial extent provided in the WDPA. The spatial extent in the WDPA (Rep_Area) is reported by nations and may represent the area as measured in GIS or paper maps, rather than the legally gazetted area.</p> <p>See Table S16 for detailed information by country describing the sources of PA data used for the nine Amazonian countries. </p> <p>Citation of original paper: Golden Kroner, R. E., Qin, S., Cook, C. N., Krithivasan, R., Pack, S. M., Bonilla, O. D., Cort-Kansinally, K. A., Coutinho, B., Feng, M., Martínez Garcia, M. I., He, Y., Kennedy, C. J., Lebreton, C., Ledezma, J. C., Lovejoy, T. E., Luther, D. A., Parmanand, Y., Ruíz-Agudelo, C. A., Yerena, E., … Mascia, M. B. (2019). The uncertain future of protected lands and waters. <em>Science</em>, <em>364</em>(6443), 881–886. <a href="https://doi.org/10.1126/science.aau5525">https://doi.org/10.1126/science.aau5525</a></p>
Identifying South African Marine Protected Areas at risk from marine heatwaves and cold spells
<p>This data reflects information on marine heatwaves (MHWs) and marine cold spells (MCSs) that occurred along the South African coast from January 1982 to April 2022, with special focus on Marine Protected Areas. Thermal metrics for MHW and MCS events were obtained using the HeatwaveR package (Schlegel and Smit, 2018) and the associated Marine Heatwave Tracker (Schlegel, 2020). </p> <p> </p> <p>THis data stems from Courtailac et al (in review) Indentifying South AFrican Marine Protected Areas at risk of marine heatwaves and cold-spells </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.