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50 results for “regeneration dynamics”
Supplementary information for 'Distinct gene expression dynamics in developing and regenerating crustacean limbs', by Sinigaglia et al.
<p>Supplementary data and code for the manuscript <em>'Distinct gene expression dynamics in developing and regenerating crustacean limbs'</em>, by Sinigaglia et al.</p>
Data from: Genet dynamics of a regenerating dwarf bamboo population across heterogeneous light environments in a temperate forest understorey
Despite the advantage of plant clonality in patchy environments, studies focusing on genet demography in relation to spatially heterogeneous environments remain scarce. Regeneration of bamboos in forest understoreys after synchronous die-off provides an opportunity for assessing how they come to proliferate across heterogeneous light environments. In a Japanese forest, we examined genet demography of a population of Sasa kurilensis over a 7-year period starting 10 years after die-off, shortly after which some genets began spreading horizontally by rhizomes. The aboveground biomass was estimated and genets were discriminated in 9-m2 plots placed under both canopy gaps and closed canopies. Overall, the results suggest that the survival and spread of more productive genets and the spatial expansion of genets into closed canopies underlie the proliferation of S. kurilensis. Compared to canopy gaps, the recovery rate of biomass was much slower under closed canopies for the first 10 years after the die-off, but became accelerated during the next seven years. Genet survival was greater for more productive genets (with greater initial number of culms), and the spaces occupied by genets that died were often colonized afterward by clonal growth of surviving genets. The number of genets decreased under canopy gaps due to greater mortality, but increased under closed canopies where greater number of genets colonized clonally from outside the plots than genets died. The colonizing genets were more productive (having larger culms) than those originally germinated within the plots, and the contribution of colonizing genets to the biomass was greater under closed canopies. Our study emphasizes the importance of investigating genet dynamics over relevant spatio-temporal scales to reveal processes underlying the success of clonal plants in heterogeneous habitats.
Data from: Genet dynamics of a regenerating dwarf bamboo population across heterogeneous light environments in a temperate forest understorey
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Data from: Forest composition modifies litter dynamics and decomposition in regenerating tropical dry forest
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Supplementary material 1 from: Solé R, Gripenberg S, Lewis OT, Markesteijn L, Barrios H, Ratz T, Ctvrtecka R, Butterill PT, Segar ST, Metz MA, Dahl C, Rivera M, Viquez K, Ferguson W, Guevara M, Basset Y (2019) The role of herbivorous insects and pathogens in the regeneration dynamics of Guazuma ulmifolia in Panama. Nature Conservation 32: 81-101. https://doi.org/10.3897/natureconservation.32.30108
Supplementary tables S1-S4, Appendix S1, Plate S1
Single cell RNA-Seq reveals Fgf signaling dynamics during sensory hair cell regeneration
GEO Series GSE123241. Danio rerio. 3 samples. Type: Expression profiling by high throughput sequencing.
TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration
GEO Series GSE216889. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Mitochondrial Dynamics Govern Whole-body Regeneration Through Stem Cell Pluripotency and Mitonuclear Balance
GEO Series GSE244070. Schmidtea mediterranea. 71 samples. Type: Expression profiling by high throughput sequencing.
Dynamic interplay between IL1 and WNT pathways in regulating dermal adipocyte lineage cells during skin development and wound regeneration
GEO Series GSE189241. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Dynamic miRNA Expression Patterns During Retina Regeneration in Zebrafish: Loss of Dicer Inhibits Regeneration
GEO Series GSE58702. Danio rerio. 3 samples. Type: Expression profiling by high throughput sequencing.
Distinct gene expression dynamics in developing and regenerating crustacean limbs
GEO Series GSE196485. Parhyale hawaiensis. 212 samples. Type: Expression profiling by high throughput sequencing.
NA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus.
GEO Series GSE44995. Apostichopus japonicus. 5 samples. Type: Expression profiling by high throughput sequencing.
Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity
GEO Series GSE215824. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dynamic remodeling of mRNA splicing and translation programs drives hepatocyte proliferation during liver regeneration
GEO Series GSE105944. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver
GEO Series GSE151309. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Mitochondrial Dynamics Govern Whole-body Regeneration Through Stem Cell Pluripotency and Mitonuclear Balance [bulk RNA-seq]
GEO Series GSE244068. Schmidtea mediterranea. 60 samples. Type: Expression profiling by high throughput sequencing.
Mitochondrial Dynamics Govern Whole-body Regeneration Through Stem Cell Pluripotency and Mitonuclear Balance [RNAi scRNA-seq]
GEO Series GSE266661. Schmidtea mediterranea. 9 samples. Type: Expression profiling by high throughput sequencing.
Elucidating the Cellular and Molecular Dynamics of Sebaceous Gland Self-Renewal and Regeneration
GEO Series GSE225252. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (WGBS)
GEO Series GSE126702. Danio rerio. 16 samples. Type: Methylation profiling by high throughput sequencing.
Single-cell RNA-seq reveals novel cell differentiation dynamics during human airway epithelium regeneration
GEO Series GSE121600. Homo sapiens; Sus scrofa; Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.