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6 results for “replicated time series”
Replication Package for the Paper: Transfer Learning with Time Series Data: A Systematic Mapping Study
<p>This is a replication package for the paper "Transfer Learning with Time Series Data: A Systematic Mapping Study".</p> <p>It provides</p> <ul> <li>a documentation of the conducted electronic literature search,</li> <li>exports of the search results from each literature database,</li> <li>and an excel file on the included literature and extracted data.</li> </ul>
Data from: Uncovering the genetic signature of quantitative trait evolution with replicated time series data
The genetic architecture of adaptation in natural populations has not yet been resolved: it is not clear to what extent the spread of beneficial mutations (selective sweeps) or the response of many quantitative trait loci drive adaptation to environmental changes. Although much attention has been given to the genomic footprint of selective sweeps, the importance of selection on quantitative traits is still not well studied, as the associated genomic signature is extremely difficult to detect. We propose 'Evolve and Resequence' as a promising tool, to study polygenic adaptation of quantitative traits in evolving populations. Simulating replicated time series data we show that adaptation to a new intermediate trait optimum has three characteristic phases that are reflected on the genomic level: (1) directional frequency changes towards the new trait optimum, (2) plateauing of allele frequencies when the new trait optimum has been reached and (3) subsequent divergence between replicated trajectories ultimately leading to the loss or fixation of alleles while the trait value does not change. We explore these 3 phase characteristics for relevant population genetic parameters to provide expectations for various experimental evolution designs. Remarkably, over a broad range of parameters the trajectories of selected alleles display a pattern across replicates, which differs both from neutrality and directional selection. We conclude that replicated time series data from experimental evolution studies provide a promising framework to study polygenic adaptation from whole-genome population genetics data.
Data from: Uncovering the genetic signature of quantitative trait evolution with replicated time series data
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Drosophila melanogaster embryonic development RAMPAGE time series (Biological replicate #2)
GEO Series GSE89299. Drosophila melanogaster. 23 samples. Type: Expression profiling by high throughput sequencing.
Implications of time-series gene expression profiles of replicative senescence
GEO Series GSE41714. Homo sapiens. 12 samples. Type: Expression profiling by array.
Circadian time-series RNA-sequencing of SKNAS neuroblastoma cells with inducible N-MYC-ER, Replicate #2
GEO Series GSE237608. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.