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102 results for “reproductive timing”
More social species live longer, have longer generation times, and longer reproductive windows
<p>Data and scripts required to reproduce the results of the manuscript "More social species live longer, have longer generation times, and longer reproductive windows"</p>
Reproduction package for the paper "Correlating spectral and timing properties in the evolving jet of themicro blazar MAXI J1836-194"
<p>Basic reproduction package for the paper in the title; it contains all the necessary information and scripts required to replicate the results and plots, minus the proprietary code used (which can be found on github on request).</p>
Time spent in distinct life-history stages has sex-specific effects on reproductive fitness in wild Atlantic salmon
<p><span>In species with complex life cycles, life history theory predicts that fitness is affected by conditions encountered in previous life history stages. Here, we use a four-year pedigree to investigate if time spent in two distinct life history stages has sex-specific reproductive fitness consequences in anadromous Atlantic salmon (<i>Salmo salar</i>). We determined the amount of years spent in fresh water as juveniles (freshwater age, FW, measured in years), and years spent in the marine environment as adults (sea age, SW, measured in sea winters) on 264 sexually mature adults collected on a river spawning ground. We then estimated reproductive fitness as the number of offspring (reproductive success) and the number of mates (mating success) using genetic parentage analysis (>5000 offspring). Sea age is significantly and positively correlated with reproductive and mating success of both sexes whereby older and larger individuals gained the highest reproductive fitness benefits (females: 62.2% increase in offspring/SW and 34.8% increase in mate number/SW; males: 201.9% offspring/SW and 60.3% mates/SW). Younger freshwater age was significantly related to older sea age and thus increased reproductive fitness, but only among females (females: -33.9% offspring/FW and -32.4% mates/FW). This result implies that females can obtain higher reproductive fitness by transitioning to the marine environment earlier. In contrast, male mating and reproductive success was unaffected by freshwater age and more males returned at a younger age than females despite the reproductive fitness advantage of later sea age maturation. Our results show that the timing of transitions between juvenile and adult phases has a sex-specific consequence on female reproductive fitness, demonstrating a life-history trade-off between maturation and reproduction in wild Atlantic salmon.</span></p>
Relative breeding timing and reproductive success of a resident montane bird species
<p>The phenological match-mismatch hypothesis predicts that animals that better synchronize critical life history events with the peak availability of their primary food source should have higher fitness. If phenological match-mismatch determines breeding success, most individuals in a population may be expected to breed simultaneously within a given year because selection has favored mechanisms that allow for the tracking of optimal food abundance. Therefore, individuals that breed too early or too late relative to the bulk of the population ("peak" of breeding) should experience decreased fitness. Using 11 years of data, we investigated the effect of relative breeding timing on breeding success in resident mountain chickadees (Poecile gambeli) across two elevations in the Sierra Nevada mountains, USA. Chickadees that bred during the peak of nesting did not have the highest breeding success; instead, birds that bred earliest performed best at high elevation, while at low elevation early and peak nests performed similarly. Breeding success decreased linearly with relative timing at both high and low elevations, and the relationship between breeding success and timing differed among years. Our results suggest that phenological match-mismatch may not be the main driver of within-year variation in breeding success in animals residing in montane environments.</p>
Reproduction package for the paper 'Evidence for a dynamic corona in the short-term time lags of black hole X-ray binary MAXI J1820+070'
<p>This is a basic reproduction package for the paper 'Evidence for a dynamic corona in the short-term time lags of black hole X-ray binary MAXI J1820+070', Bollemeijer et al., 2024, MNRAS, 528, 558-576.</p> <ul> <li>This reproduction package aims for open science, with the internal API designation of 'Gold'.</li> <li>Authors: Niek Bollemeijer, Phil Uttley, Arkadip Basak, Adam Ingram, Jakob van den Eijnden, Kevin Alabarta, Diego Altamirano, Zaven Arzoumanian, Douglas J.K. Buisson, Andrew C. Fabian, Elizabeth Ferrara, Keith Gendreau, Jeroen Homan, Erin Kara, Craig Markwardt, Ronald A. Remillard, Andrea Sanna, James F. Steiner, Francesco Tombesi, Jingyi Wang, Yanan Wang and Abderahmen Zoghbi</li> <li>Paper DOI: https://doi.org/10.1093/mnras/stad3912</li> <li>Arxiv DOI: https://doi.org/10.48550/arXiv.2312.09835</li> <li>Published in the Monthly Notices of the Royal Astronomical Society (date of acceptance: 2023/12/12)</li> </ul> <h2>Raw Data</h2> <ul> <li>Raw event files for the described NICER observations can be obtained from the HEASARC at https://heasarc.gsfc.nasa.gov/cgi-bin/W3Browse/w3browse.pl. Select NICER as the telescope and search for MAXI_J1820+070.</li> <li>We used HEASoft v6.28 with standard reprocessing settings to obtain event lists to make light curves. See paper for details.</li> </ul> <h2>Software</h2> <ul> <li>Linux Ubuntu 22.04.</li> <li>Jupyter Notebook (7.0.7)</li> <li>Programming languages used: Python (3.12.1)</li> <li>Python packages used: numpy (1.26.3), matplotlib (3.8.2), scipy (1.12.0), astropy (6.0.0)</li> </ul> <h2>Figures and Tables</h2> <ul> <li>Figures can be reproduced from the ./figures/ folder.</li> <li>All material and data used are available as intermediate data products.</li> <li>Jupyter notebooks (.ipynb files) can be used to make all figures. Running all cells at once does not work, but you can choose the figure you want to remake and executing the relevant cells will result in those figures.</li> </ul> <h2>Intermediate data products</h2> <ul> <li>The light curve arrays that are made in the first few cells of the main Jupyter Notebook can be found in 'datafiles.zip'. </li> <li>The parameters for the Lorentzian fits of the power spectra and the grouping of different observations can be found in 'qpofitsc.txt' and 'obsidsa.txt', respectively, in the same zipped folder.</li> </ul> <h2>End-to-End analysis scripts</h2> <ul> <li>The three Jupyter notebooks that have been added can be used to make the figures and reproduce the main results of the paper. Evidence_for_a_dynamic_corona_main.ipynb is about the main body of the paper, Evidence_for_a_dynamic_corona_energy_bands.ipynb is used for a part of the Discussion involving multiple narrow energy bands and Evidence_for_a_dynamic_corona_sim.ipynb is about the simulations described in Appendix A.</li> </ul>
Fig. 1c in Climatic Determinants Of The Reproductive Timing In The Asian House Gecko, Hemidactylus Frenatus Duméril And Bibron (Gekkonidae)
Fig. 1c. Monthly proportion of gravid Hemidactylus frenatus and climate variables for Bandung, Java, in 1960. (Data from Church, 1962).
Fig. 1b in Climatic Determinants Of The Reproductive Timing In The Asian House Gecko, Hemidactylus Frenatus Duméril And Bibron (Gekkonidae)
Fig. 1b. Monthly proportion of gravid Hemidactylus frenatus and climate variables for Darwin, Australia, in 2006/7 (13th month is January 2007).
Fig. 1a in Climatic Determinants Of The Reproductive Timing In The Asian House Gecko, Hemidactylus Frenatus Duméril And Bibron (Gekkonidae)
Fig. 1a. Monthly proportion of gravid Hemidactylus frenatus and climate variables for Darwin, Australia, in 2005.
Time spent in distinct life-history stages has sex-specific effects on reproductive fitness in wild Atlantic salmon
Open the record for dataset details and reuse information.
Relative breeding timing and reproductive success of a resident montane bird species
Open the record for dataset details and reuse information.
R code for Snyder, Ellner, and Hooker, "Time and chance: using age partitioning to understand how luck drives variation in reproductive success"
<p>Over the course of individual lifetimes, luck usually explains a large fraction of the between- individual variation in lifespan or lifetime reproductive output (LRO) within a population, while variation in individual traits or "quality" explains much less. To understand how, where in the life cycle, and through which demographic processes luck trumps trait variation, we show how to partition by age the contributions of luck and trait variation to LRO variance, and how to quantify three distinct components of luck. We apply these tools to several empirical case studies.</p> <p>We find that luck swamps effects of trait variation at all ages, primarily due to randomness in individual state dynamics ("state trajectory luck"). Luck early in life is most important. Very early state trajectory luck generally determines whether or not an individual ever breeds, likely by ensuring that they are not dead or doomed quickly. Less early luck drives variation in success among those breeding at least once. Consequently, the importance of luck often has a sharp peak early in life, or two peaks. We suggest that ages/stages where the importance luck peaks are potential targets for interventions to benefit a population of concern, different from those identified by eigenvalue elasticity analysis.</p>
Local adaptation from afar: migratory bird populations diverge in the initiation of reproductive timing while wintering in sympatry
<p><span>The initiation of reproduction in many seasonally breeding animals is controlled by photoperiod and tends to be clinal: populations at higher latitudes breed later than those at lower latitudes, often reflecting a higher photoperiodic threshold. Migratory animals presumably time reproduction to match conditions at their breeding grounds at least in part by cues perceived</span> on their wintering grounds<span>. </span>We asked how closely related dark-eyed junco (<i>Junco hyemalis</i>) populations that overwinter in sympatry but breed in allopatry respond to their shared winter environment by comparing early spring indices of readiness to migrate and breed (baseline and elevated testosterone). We measured stable hydrogen isotopes from feathers grown the preceding year and claws grown during winter to estimate breeding and wintering latitudes, respectively. We predicted that if reproductive initiation is adapted to the emergence of resources at their respective breeding destinations, then birds migrating to higher latitudes (slate-colored junco; <i>J. h. hyemalis</i>) should delay breeding as compared to those migrating to lower latitudes (pink-sided junco; <i>J. h. mearnsi</i>) despite a common overwinter environment. We found higher testosterone in pink-sided juncos consistent with earlier reproductive initiation, suggesting local adaptation in reproductive phenology achieved through differential responses to predictive environmental cues.</p>
Data from: The effects of food supply on reproductive hormones and timing of reproduction in an income-breeding seabird
<p class="CxSpFirst">Current food supply is a major driver of timing of breeding in income-breeding animals, likely because increased net energy balance directly increases reproductive hormones and advances breeding. In capital breeders, increased net energy balance increases energy reserves, which eventually leads to improved reproductive readiness and earlier breeding. To test the hypothesis that phenology of income-breeding birds is independent of energy reserves, we conducted an experiment on food-supplemented ("fed") and control female black-legged kittiwakes (<em>Rissa tridactyla</em>). We temporarily increased energy costs (via weight handicap) in a 2 × 2 design (fed/unfed; handicapped/unhandicapped) during the pre-laying period and observed movement via GPS-accelerometry. We measured body mass, baseline hormones (corticosterone; luteinising hormone) before and after handicap manipulation, and conducted a gonadotropin-releasing hormone challenge. Females from all treatment groups foraged in similar areas, implying that individuals could adjust time spent foraging, but had low flexibility to adjust foraging distance. Consistent with the idea that income breeders do not accumulate reserves in response to increased food supply, fed birds remained within an energy ceiling by reducing time foraging instead of increasing energy reserves. Moreover, body mass remained constant until the onset of follicle development 20 days prior to laying regardless of feeding or handicap, implying that females were using a 'lean and fit' approach to body mass rather than accumulating lipid reserves for breeding. Increased food supply advanced endocrine and laying phenology and altered interactions between the hypothalamic-pituitary-adrenal axis and the hypothalamic-pituitary-gonadal axis, but higher energy costs (handicap) had little effect. Consistent with our hypothesis, increased food supply (but not net energy balance) advanced endocrine and laying phenology in income-breeding birds without any impact on energy reserves.</p>
Data from: Latitudinal clines in the timing and temperature-sensitivity of photoperiodic reproductive diapause in Drosophila montana
<p>Reproductive diapause is a primary mechanism used by arthropods to synchronize their life cycle with seasonal changes in temperate regions. Our study species, Drosophila montana, represents the northern insect species where flies enter reproductive diapause under short day conditions and where the precise timing of diapause is crucial for both survival and offspring production. We have studied clinal variation in the critical day length for female diapause induction (CDL) and their overall susceptibility to enter diapause (diapause incidence), as well as the temperature sensitivity of these traits. The study was performed using multiple strains from four latitudinal clines of the species – short clines in Finland and Alaska and long clines in the Rocky Mountains and the western coast of North America - and from one population in Kamchatka, Russia. CDL showed strong latitudinal clines on both continents, decreasing by one hour per five degrees decline in latitude, on average. CDL also decreased in all populations along with an increase in fly rearing temperature postponing the diapause to later calendar time, the effects of temperature being stronger in southern than in northern population. Female diapause incidence was close to 100 % under short day / low temperature conditions in all populations, but decreased below 50 % even under short days in 19°C in the southern North American western coast populations and in 22°C in most populations. Comparing a diversity of climatic data for the studied populations showed that while CDL is under a tight photoperiodic regulation linked with latitude, its length depends also on climatic factors determining the growing season length. Overall, the study deepens our understanding of how spatial and environmental parameters affect the seasonal timing of an important biological event, reproductive diapause, and helps to estimate the evolutionary potential of insect populations to survive in changing climatic conditions.</p>
Data for: Reproductive tactics, birth timing and the risk-resource trade-off in an income breeder
<p><span>In variable environments, habitats that are rich in resources often carry a higher risk of predation. As a result, natural selection should favour individuals that balance allocation of time to foraging versus avoiding predation through an optimal decision-making process that maximises fitness. The behavioural trade-off between resource acquisition and risk avoidance is expected to be particularly acute during gestation and lactation when the energetic demands of reproduction peak</span><span>.</span><span> Here, we investigated how reproductive female roe deer adjust their foraging activity and habitat use during the birth period to manage this trade-off compared to non-reproductive juveniles, and how parturition date constrains individual tactics of risk-resource management. Activity of reproductive females more than doubled immediately following parturition, when energy demand is highest. Furthermore, compared to non-reproductive juveniles, they increased their exposure to risk by using open habitat more during daytime and ranging closer to roads. However, these post-partum modifications in behaviour were particularly pronounced in late-parturient females who adopted a more risk-prone tactic, presumably to compensate for the growth handicap of their late-born offspring. In income breeders, individuals that give birth late may be constrained to trade risk avoidance for foraging during peak allocation to reproduction, with probable consequences for individual fitness.</span></p>
Timing of a plant–herbivore interaction alters plant growth and reproduction
<p>Phenological shifts in timing of species interactions have the potential to change size-structured species interactions, but relatively few studies have used experimental manipulations to examine the season-long effects of phenological mismatches in multiple development contexts. While previous experimental studies have examined how phenological mismatches in plant-herbivore interactions can affect both plants and their herbivores, less is known about their effects on subsequent plant-pollinator interactions. Here, we conducted an experiment to determine how shifts in the phenological timing of monarch (<i>Danaus plexippus</i>) larval herbivory affected milkweed (<i>Asclepias fascicularis</i>) host plant performance, including effects on growth and subsequent effects on flower and seed pod phenology and production. We found that variation in the timing of herbivory affected both plant growth and reproduction, with measurable effects several weeks to months after herbivory ended. The timing of herbivory had qualitatively different effects on vegetative and reproductive biomass: early-season herbivory had the strongest effects on plant size, while late-season herbivory had the strongest effects on the production of viable seeds. These results show that phenological shifts in herbivory can have persistent and qualitatively different effects on different life stages across the season.</p>
A real-time feedback system stabilises the regulation of worker reproduction under various colony sizes
<p>Based on individual trait expression, an agent-based simulation was used to identify an explicit mechanism for understanding colony size dependent behaviour. This is the code for and data from the agent-based simulation</p>
Data: Sex-specific effects of capital resources on reproductive timing and success in red squirrels
<p><span>Reproduction is an energetically expensive activity for both sexes. However, if males and females differ in their annual timing of reproduction, such that peak investment for one sex occurs during a more resource-limited period, there is an opportunity for sex-specific selection to act on the acquisition of energetic resources. Both male and female North American red squirrels (<em>Tamiasciurus hudsonicus</em>) cache conifer cones, although males typically have larger caches than females. Peak energetic investment in reproduction occurs for males during the mating season in winter and early spring (when squirrels rely almost exclusively on cached resources) and for females during lactation (which can align with fresh food availability). We provide evidence that suggests sex differences in cache size are likely driven by a stronger positive connection between cached resources and components of fitness for males than for females. Specifically, males with larger caches have greater siring success than males with smaller caches, whereas for females, only early breeding females experience a positive effect of cache size on the number of recruits produced. We also show that males sire pups and females give birth earlier in the year if they have larger caches compared with squirrels of the same sex with smaller caches. Sexual selection can thus extend beyond traits directly connected to mating behavior, and can act on traits related to acquiring resources needed to fuel reproduction that are expressed months or years in advance of breeding efforts.</span></p>
Source population and time spent in captivity affect survival and reproduction of long-distance translocated northern bobwhites
<p>Northern bobwhites (<em>Colinus virginianus</em>) have become a species of great conservation priority because of widespread and ongoing population declines. Long-distance translocations are becoming increasingly used to access a source population with densities high enough to support translocation. Two key uncertainties exist regarding the efficacy of long-distance translocations: choosing a source population with adaptations that will be successful in a novel environment and mitigating the stress response common during the translocation process. We translocated bobwhites from the South Texas Plains and the Floridian Coastal Plain to a recipient site in the Floridian Coastal Plain in 2021 and 2022 to compare the survival and productivity of bobwhites translocated from two different source populations. We also evaluated how varying holding times during the translocation process influenced the success of the translocated individuals. Breeding season survival, nest propensity, and fecundity were greater for Florida resident and Florida translocated bobwhites relative to Texas translocated bobwhites. We observed high rates of mortality during the transport and holding processes, but holding time did not affect breeding season survival of Texas translocated bobwhites. Both nest success and fecundity of Texas translocated bobwhites were negatively affected by holding time. Bobwhites translocated long distances may have the adaptive capacity to be successful in novel environments, but the consequences of translocation stress can be detrimental. Future translocation planning should consider choosing source populations from similar ecoregions to simultaneously decrease translocation distances and potential stress from translocation.</p>
Table 2 in Effects of different combinations of N, P and K at different time interval on vegetative, reproductive, yield and quality traits of mango (Mangifera Indica. L) cv. Dusehri
<p><b>Table 2.</b> Effect of different fertilizer combinations of N, P and K on reproductive physiology of mango cv. Dusehri.</p><table><tbody><tr><th><b>Treatments</b></th><th><b>Growth size (mm)</b></th><th><b>Total No. of Panicle/Tree</b></th><th><b>Total no. of flowers / Panicle</b></th><th><b>Sex Ratio (%)</b></th><th><b>Fruit Drop (%)</b></th><th><b>Fruit Retention (%)</b></th><th><b>Total no. of fruit/tree</b></th><th><b>Yield (Kg/Tree)</b></th><th><b>Fruit Length (cm)</b></th><th><b>Fruit Weight (g)</b></th><th><b>Pulp Weight (g)</b></th><th><b>Stone Weight (g)</b></th><th><b>Peel Weight (g)</b></th><th><b>TSS (%)</b></th><th><b>Total Acidity (%)</b></th><th><b>TSS/Acid Ratio</b></th><th><b>Vit. C (mg/100 mL)</b></th><th><b>Total Sugar (%)</b></th></tr></tbody><tbody><tr><th>T1 (Control)</th><td>149.34d ± 3.89</td><td>397.67h ± 3.51</td><td>543.21h ± 3.61</td><td>51.17c ± 2.10</td><td>94.85a ± 1.40</td><td>1.83e ± 0.15</td><td>186.72g ± 4.51</td><td>40.01e ± 4.51</td><td>15.4b ± 3.17</td><td>155.15e ± 6.34</td><td>76.30g ± 2.22</td><td>24.14f ± 2.02</td><td>28.61f ± 1.86</td><td>20.29d ± 1.05</td><td>0.52a ± 0.005</td><td>22.43</td><td>31.26f ± 0.92</td><td>14.52c ± 0.25</td></tr><tr><th>T2 (N)</th><td>166.67b ± 4.47</td><td>508.57f ± 4.51</td><td>612.47f ± 4.58</td><td>54.42bc ± 1.05</td><td>94.86a ± 2.41</td><td>5.57d ± 0.57</td><td>213.34f ± 3.06</td><td>52.70cd ± 4.50</td><td>16.4b ± 3.11</td><td>175.50bc ± 5.50</td><td>82.41f ±1.90</td><td>30.04de ± 2.21</td><td>33.70e ± 1.38</td><td>21.06cd ± 0.95</td><td>0.49b ± 0.004</td><td>25.16</td><td>42.22c ± 1.18</td><td>15.24bc ± 0.41</td></tr><tr><th>T3 (P)</th><td>156.26cd ± 4.85</td><td>467.33g ± 4.04</td><td>593.34g ± 3.61</td><td>53.57bc ± 1.01</td><td>91.72ab± 2.51</td><td>8.82bc ± 0.72</td><td>241.40e ± 4.04</td><td>50.14d ± 5.03</td><td>18.3ab ± 2.75</td><td>169.24cd ± 5.41</td><td>85.23f ± 1.96</td><td>28.50e ± 2.00</td><td>35.62de ±1.94</td><td>22.07bc ± 1.10</td><td>0.45c ± 0.005</td><td>29.13</td><td>39.37d ± 0.98</td><td>15.82bc ± 0.29</td></tr><tr><th>T4 (K)</th><td>164.80bc ± 4.95</td><td>634.57c ± 4.51</td><td>730.19c ± 4.56</td><td>57.39bc ± 2.38</td><td>94.26ab ± 1.79</td><td>5.83d ± 0.48</td><td>278.33d ± 3.51</td><td>55.23cd ± 4.50</td><td>19.3ab ± 2.99</td><td>182.01b ± 5.47</td><td>99.92e ± 1.89</td><td>31.26e ± 1.76</td><td>40.84c ± 1.35</td><td>21.41cd ± 1.25</td><td>0.37d ± 0.002</td><td>43.27</td><td>36.62e ± 1.21</td><td>16.89b ± 0.55</td></tr><tr><th>T5 (NP)</th><td>166.48b ± 4.98</td><td>584.47d ± 3.51</td><td>639e.46 ± 4.04</td><td>56.61bc ± 1.59</td><td>93.34ab ± 2.15</td><td>6.92cd ± 0.33</td><td>288.62c ± 4.51</td><td>57.31c ± 5.03</td><td>17.2b ± 3.29</td><td>160.46de ±4.86</td><td>107.34c ± 2.11</td><td>35.63bc ± 2.02</td><td>37.81d ± 1.88</td><td>23.43ab ± 0.93</td><td>0.35d ± 0.001</td><td>40.48</td><td>42.09b ± 0.47</td><td>16.65b ± 0.61</td></tr><tr><th>T6 (NK)</th><td>160.75bc ± 5.05</td><td>684.66b ± 4.50</td><td>810.62b ± 4.59</td><td>60.17b ± 2.53</td><td>90.28cd ± 2.71</td><td>9.74ab ± 0.66</td><td>320.32b ± 3.05</td><td>66.61b ± 4.49</td><td>18.5ab ± 2.73</td><td>180.32b ± 5.35</td><td>118.04b ± 1.94</td><td>37.21b ± 1.81</td><td>46.92b ± 1.65</td><td>23.30ab ± 0.08</td><td>0.32e ± 0.002</td><td>51.28</td><td>51.48b ±1.07</td><td>16.07b ± 0.71</td></tr><tr><th>T7 (PK)</th><td>159.42bc ± 4.98</td><td>559.71e ± 3.49</td><td>701.17d ± 3.61</td><td>55.31bc ± 1.02</td><td>92.96ab ± 2.56</td><td>7.49bcd ± 0.52</td><td>274.37d ± 2.52</td><td>54.85cd ± 4.51</td><td>18.1b ± 3.01</td><td>178.24bc ± 6.53</td><td>103.51d ± 1.79</td><td>33.07cd ± 1.95</td><td>42.14c ± 1.43</td><td>2.35bc ± 0.05</td><td>0.31e ± 0.002</td><td>52.41</td><td>51.55b ± 0.95</td><td>15.01b ± 0.37</td></tr><tr><th>T8 (NPK)</th><td>177.51a ± 4.92</td><td>845.64a ± 3.61</td><td>974.52a ± 4.58</td><td>69.18a ± 2.87</td><td>86.10e ± 2.85</td><td>13.85a ± 0.43</td><td>379.05a ± 3.00</td><td>82.35a ± 3.51</td><td>23.3a ± 3.10</td><td>197.05a ± 5.62</td><td>135.32a ± 2.09</td><td>43.53a ± 2.07</td><td>52.09a ± 1.77</td><td>24.53a ± 0.06</td><td>0.26f ± 0.001</td><td>73.53</td><td>57.63a ± 0.07</td><td>20.48a ± 0.53</td></tr></tbody></table><p>Values within each column followed by the same letter are not significantly different at P <0.5 level.</p><p>Values within each column followed by the same letter are not significantly different at <i>P</i> <0.05 level.</p><p>Values within each column followed by the same letters are not significantly different at <i>P</i> <0.05 level.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.