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117 results for “research article”
Dataset for "Reduction-responsive immobilised and protected enzymes" research article
<p>The dataset for the paper titled "Reduction-responsive immobilised and protected enzymes".<br>The dataset includes the following items:<br><br>1. Unprocessed tif files (4 items) of the scanning electron microscopy (SEM) micrographs;<br>These SEM micrographs are presented in Fig. 3a and Fig. 3b in the manuscript and also in Fig. S1a and Fig. S1b in the supporting information document.<br><br>2. "Reduction-responsive immobilised and protected enzymes" xls file (1 file) including 4 datasheets;<br>- The "<strong>Cell experiment" </strong>sheet includes the cell viability results in Fig. 5d and Fig. S5.<br>- The "<strong>Enzyme activity - B-Gal"</strong> sheet includes all the results regarding the B-Gal enzyme activity in Fig. 4, main text, and Fig. S3.<br>- The "<strong>Enzyme activity - ASNase"</strong> sheet includes all the results regarding the ASNase enzyme activity in Fig. 5b, Fig. 5c, and Fig. S4.<br>- The<strong> "B-Gal and ASNase layer growth"</strong> sheet includes all the results regarding the layer growth reactions and kinetics of B-Gal and ASNase enzymes in Fig. 3d, Fig. 5a, and Fig. S1d.<br><br>3. "SNP and layer growth analysis" xls file (1 file) including 13 datasheets;<br>These datasheets contain the raw data of the size measurements of the silica nanoparticles conducted on the SEM micrographs before and after layer growth for each sampling timepoint for both B-Gal and ASNase enzymes with glutaraldehyde (Glu) and DSP as linkers.<br>Note: These data were used to make the graphs in the "<strong>B-Gal and ASNase layer growth" </strong>sheet.</p>
Adsorption kinetics data sets, compiled from the literature. As used in the research article "A revised pseudo-second order kinetic model for adsorption, sensitive to changes in adsorbate and adsorbent concentrations"
<p>Data sets reporting experimental adsorption kinetics, compiled from the literature. These data sets were subjected to empirical analysis in the development of our revised pseudo-second order rate equation (the rPSO model) as discussed in the ChemRxiv pre-print "<a href="https://chemrxiv.org/articles/preprint/A_Revised_Pseudo-Second_Order_Kinetic_Model_for_Adsorption_Sensitive_to_Changes_in_Sorbate_and_Sorbent_Concentrations/12008799">A Revised Pseudo-Second Order Kinetic Model for Adsorption, Sensitive to Changes in Sorbate and Sorbent Concentrations</a>".</p>
Dataset supplementing the article Einhäuser, W., Methfessel, P., & Bendixen, A. (2017). Newly acquired audio-visual associations bias perception in binocular rivalry. Vision Research, 133, 121-129.
<p>This dataset supplements the publication<br> Einhäuser, W., Methfessel, P., & Bendixen, A. (2017). Newly acquired audio-visual associations bias perception in binocular rivalry. Vision Research, 133, 121-129. doi: 10.1016/j.visres.2017.02.001</p> <p>Use is free for scientific purposes, provided the aforementioned reference is appropriately cited.<br> Description of files<br> - conditionsByObserver.csv<br> contains for each of the 16 observers the color and grating direction that had been coupled to either the low-pitch or the high-pitch tone<br> column 1: observer number<br> column 2: color associated with low-pitch tone<br> column 3: color associated with high-pitch tone<br> column 4: drift direction associated with low-pitch tone<br> column 5: drift direction associated with high-pitch tone</p> <p>- conditionsByObserver.mat contains the same information as matlab variables (as four vectors/cell arrays with one entry per observer)</p> <p>- toneByBlockAndTrial.csv<br> contains the conditions for all 18 rivalry trials (6 rivalry blocks with 3 trials each) for each observer<br> column 1: observer number<br> column 2: block number<br> column 3: trial number<br> column 4: tone (low [pitch], high [pitch], none) played in this trial<br> Note that due to a technical error for observer #16, block 6 was presented first, followed by 1,2,3,4,5; for all other observers blocks were used in the order given (1,2,3,4,5,6).</p> <p>- toneByBlockAndTrial.mat contains the same information as a 16x6x3 matrix named toneByBlockAndTrial ; tones are coded numerically (1-low pitch,2-high pitch,3-none)</p> <p>- eyeTraces.mat contains three cell arrays of dimensions 16x6x3 (observer x rivalry block x rivalry trial) called xEye, oknGain, and timeSinceTrialStart;</p> <p>o each entry of xEye contains the horizontal eye position for<br> the respective trial in eye-tracker coordinates (which correspond to screen pixels, except that (1/1) is the upper right rather than the upper left and values increase from right to left due to the setup configuration)</p> <p>o oknGain contains the gain computed from these eye positions.</p> <p>o timeSinceTrialStart contains the time in seconds since onset of the trial</p> <p><br> For all variables, the sampling rate is 500 Hz, in eye-tracker coordinates the speed of the grating is 240 units/ms. Blinks were removed from both eye-data variables, fast-phases were removed from the gain data. Removed data were set to NaN in eye-data variables.</p> <p>- Matlab functions figure1d.m, figure 2.m, figure3.m and figure4.m compute raw versions of the aforementioned paper's figures from the datafiles to exemplify their usage.</p> <p>[Note: In the originally published version of the article, the first two means and their standard errors of section 3.3 were stated incorrectly. All figures and statistical analyses are based on the correct data].</p>
Research data from the survey on Smart Cities professional profiles for the Article "Modelling and analyzing the availability of technical professional profiles for the success of Smart Cities projects in Europe"
<p>The file includes the complete version of data collected through the surrvey on recommended profile for two professional roles in the context of Smart Cities (SC) projects: SC engineer and SC technician. It complements the previous version focused on IoT implementation stired at <a href="../doi/10.5281/zenodo.7492254">https://zenodo.org/doi/10.5281/zenodo.7492254</a></p>
Coral growth data for the research article "Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hotspot" in Journal of Animal Ecology
<p>This repository contains the coral growth data files used to generate the results for the following article:</p> <p> </p> <p>MJ. Vergotti, JP. D’Olivo, T. Brachert, P. Capdevila, J. Garrabou, C. Linares, P. Spreter, DK. Kersting (2024) Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hot-spot. <em>Journal of Animal Ecology</em>. https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2656.14225</p> <p> </p> <p><strong>Abstract: </strong>The impact of warming on zooxanthellate corals is widespread, from tropical to temperate seas, with their associated mortalities causing global concern. The temperate coral <em>Cladocora caespitosa</em> is the only zooxanthellate coral with reef-building capacity in the Mediterranean Sea, a climate change hotspot with warming rates triple the global average. Over the past two decades, <em>C. caespitosa</em> populations have suffered severe mortality events associated with marine heatwaves (MHWs). However, with monitoring efforts beginning, at best, in the 2000s, the occurrence of MHWs before to that period, as well as the sub-lethal effects of these events remain poorly understood. Here we use sclerochronology to reconstruct the histories of past stress events and long-term sub-lethal effects on <em>C. caespitosa</em> in three locations within the NW Mediterranean Sea, each with different environmental conditions. Skeletal extension, density and calcification rates were compared to the <em>in situ</em> seawater temperature of each site to assess their relationship. Additionally, we assessed the occurrence of skeletal growth anomalies to reconstruct stress events between 1991 and 2021, a period that encompasses the onset and evolution of warming-related mass mortality events in the NW Mediterranean Sea. Our results reveal a positive association between calcification and temperature, following a latitudinal temperature gradient. However, the evolution of the likelihood distribution of growth rates in the warmest site (Columbretes Islands) since the 1990s indicates a decrease in linear extension and calcification rates during the most recent years. With the increase in the frequency of MHWs and growth anomalies during the last decade, this decline suggests a recurrence in physiological stress events. These results unravel information on the long-term impacts of warming on coral growth and highlight the potential of applying sclerochronology to reconstruct sub-lethal effects of warming using <em>C. caespitosa</em>. </p> <p> </p> <p> </p> <p><strong>Funding</strong>: This research is supported by the Horizon 2020 program of research and innovation of the European Union under the MaCoBioS grant agreement, by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, project no. 401447620) and by the Spanish Ministry of Science, Innovation and Universities under the project UndResCoral (project no. PID2022-137539OA-C22). D.K.K. was supported by a Ramon y Cajal postdoctoral grant funded by the Ministry of Science and Innovation (PEICTI 2021–2023; grant no. RYC2021-033576-I). C.L. acknowledges the support by ICREA Academia. J.G. acknowledges the grant “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S) funded by AEI 10.13039/501100011033.</p>
Data set accompanying the research article "Complete representation of action space and value in all striatal pathways"
<p>GCaMP6s calcium imaging data set recorded from freely behaving mice performing open field and 2-choice decision-making tasks using miniscopes. Mice were implanted in the right dorsomedial striatum and three types of output neurons were genetically targeted using transgenic Cre-lines. The data set comprises single-cell spatial filters and calcium activity traces extracted using CaImAn (https://github.com/flatironinstitute/CaImAn) as well as behavioral event logs and tracking coordinates. For more details please refer to the article "Complete representation of action space and value in all striatal pathways" published by the data sets' authors. Analysis code can be found at https://doi.org/10.5281/zenodo.5034618.</p>
DOI's with SDG labels on Target level | 1.4M research articles (2009-2020) related to Sustainable Development Goals
<p>Table content: This data set contains 1.4 million publication DOI's related to the <a href="http://metadata.un.org/sdg/">Targets of the Sustainable Development Goals</a> in the period 2009 - 2020.</p> <p>Table dimensions: rows: 1.4 million, columns: 4 / rows: 1.4 million, columns: 180</p> <p>Table columns: <a href="https://en.wikipedia.org/wiki/Digital_object_identifier">doi</a> | date | <a href="http://metadata.un.org/sdg/ontology#Target">sdg_target</a> | <a href="http://metadata.un.org/sdg/ontology#Goal">sdg_goal</a> / <a href="https://en.wikipedia.org/wiki/Digital_object_identifier">doi</a> | date | <a href="http://metadata.un.org/sdg/ontology#Target">169 sdg_targets</a> | <a href="http://metadata.un.org/sdg/ontology#Goal">17 sdg_goalsl</a></p> <p>Table formats: <a href="https://en.wikipedia.org/wiki/Comma-separated_values">.csv</a> | <a href="https://en.wikipedia.org/wiki/Microsoft_Excel">.xlsx</a> | <a href="https://en.wikipedia.org/wiki/Apache_Parquet">.parquet</a></p> <p><em>How we made this data:</em></p> <p>We have made a search on <a href="https://scopus.com">Scopus </a>using the <a href="https://aurora-network-global.github.io/sdg-queries/">Aurora SDG queries version 5</a> for each of the targets, with a limited year range from 2009 till 2020.</p> <p>Good to know: don't be alarmed if you can find a doi that is labeled with more than one target (~16%). This is not a bug, this is a feature... We used 169 queries, one for each target, a publication can appear in more han one result set.</p> <p>Read this <a href="https://zenodo.org/record/4964606/files/Evaluation_on_accuracy_of_mapping_science_to_the_United_Nations__Sustainable_Development_Goals__SDGs__of_the_Aurora_SDG_queries.pdf?download=1">report to learn more about the accuracy</a> of the queries and the data result sets.</p> <p><em>How can you use this data:</em></p> <p>You can use this data to 1. quickly match your existing publication lists to this list to see how that your publications are related to the targets of the SDG's. 2. use these as a basis / seed set / gold set to train more advanced text / graph classifiers (after you have extracted title, abstract or even full-text using crossref.org, unpaywall.org, etc)</p> <p><em>How can you help:</em></p> <p><a href="https://sites.google.com/vu.nl/aurora-sdg-research-dashboard/sdg-knowledge-base#h.d2pd3c39k276">Let us know</a> how you use this data. We'll put your project on the list in our <a href="https://sites.google.com/vu.nl/aurora-sdg-research-dashboard/sdg-knowledge-base">SDG matching knowledge base.</a></p>
Research generated data supporting the article manuscript "Setting Grounds for Data Literacy in the Sector of Agriculture: Learning About and with Open Data"
<p>In the research 345 MS courses and 216 MS courses data from the ECTS catalogue (2019) of University of Zagreb Faculty of Agriculture were mapped onto the data literacy competence areas (theme) and DL competence areas sub-themes adapted ODI Data Skills Framework (2020) expanding the term “skill” to “competence” to include knowledge and attitudes. Teaching staff was interviewed in semi-structured interviews on the data literacy competences covered in their courses and open data use and teaching in their courses as well as their perceived importance for the sector of the course.</p> <p>The upload consists of the following .csv files:</p> <table> <tbody> <tr> <td>readme_DL_OD_Salamonetal.csv</td> </tr> <tr> <td>01DL_OD_Salamonetal.csv</td> </tr> <tr> <td>02DL_OD_Salamonetal.csv</td> </tr> <tr> <td>03DL_OD_Salamonetal.csv</td> </tr> <tr> <td>04DL_OD_Salamonetal.csv</td> </tr> <tr> <td>05DL_OD_Salamonetal.csv</td> </tr> <tr> <td>06DL_OD_Salamonetal.csv</td> </tr> <tr> <td>07DL_OD_Salamonetal.csv</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p>
Raw Data related to Research Article: Scaling of metal-clad InP nanodisk lasers: optical performance and thermal effects, Optics Express, volume 29, issue 3, 2021
<p>These are the plotted and raw data used to obtain figures shown in:</p> <p>P. Tiwari, P. Wen, D. Caimi, S. Mauthe, N. Vico Triviño, M. Sousa, and K. E. Moselund, Scaling of metal-clad InP nanodisk lasers: optical performance and thermal effects., Optics Express, volume 29, issue 3, 2021</p> <p>Please comply with copyright rules of the Optical Society of America under the terms of the OSA Open Access Publishing Agreement.:</p> <p>https://www.osapublishing.org/library/license_v1.cfm#VOR-OA</p> <p> </p>
Data supplementing the article Schomaker, J., Walper, D., Wittmann, B.C., & Einhäuser, W. (2017). Attention in natural scenes: Affective-motivational factors guide gaze independently of visual salience. Vision Research, 133, 161-175.
<p>These data supplement the article Schomaker, J., Walper, D., Wittmann, B.C., & Einhäuser, W. (2017). Attention in natural scenes: Affective-motivational factors guide gaze independently of visual salience. Vision Research, 133, 161-175.</p> <p>Use is free for academic purposes, provided the aforementioned article is appropriately cited.</p> <p>The directory contains the following files</p> <p>stimuli.tar.gz - stimuli used in this study; note that this is based on the MONS database, but some deviations from the final version of the database do exist.</p> <p>ratings.mat contains the variables<br> arousal - mean arousal rating<br> valence - mean valence rating<br> valence2 - squared mean valence rating (after subtracting midpoint)<br> motivationalValue - mean motivation rating<br> motivaionalValue2 - squared mean motivation rating (after subtracting midpoint)</p> <p>All variables are 104x3, where the first dimension is the stimulus number, and the second dimension the motivation ground truth (aversive, neutral, appetitive)</p> <p><br> Experiment 1</p> <p>fixationsExperiment1.mat contains the variables fixationX, fixationY, fixationDuration, fixaitonOnset, fixationInitial, which contain for each fixation horizontal and vertical coordinate, the duration, the time of the onset relative to the trial onset and whether it is the initial fixation. All variables have dimensions 16x104x3x50, where the first dimension is the observer, the second the scene, the third the condition and the forth a counter of fixations. Whenever there are less than 50 fixations the remainder are filled with NaN.</p> <p><br> boundingBoxesExperiment1.mat contains for each critical object the bounding box coordinates x,y of upper left corner and width and height as variables boundingBoxX, boundingBoxY, boundingBoxW, boundingBoxH respectively. Note that this is relative to the eyetracker coordinates of experiment 1 (full display 1024x768, presentation in the center) and will therefore not match the coordinates of the images in the archive or the bounding box coordinates of experiment 2. Dimensions are 104x3, the dimensions representing scene number and condition, respectively.</p> <p><br> figure2.m uses these data to computes figure 2 of the article from these data</p> <p><br> dataForExperiment1.Rdata contains the data frame data, which contains for each fixation the values of the predictors used in the model of table 1. This is computed from the matlab data listed above in addition to the peak values of the AWS salience in the object.</p> <p><br> table1.R computes and prints the models for table 1</p> <p> </p> <p>Experiment 2</p> <p>fixationsExperiment2.mat contains fixation data for experiment 2. Variable names as in experiment 1. Dimensions are 18x99x3x3x50, where the first dimension is the observer, the second the image number, the third the visual condition, the third the motivational condition and the fifth the fixation count. Since only one visual condition was shown to each observer per motivational condition, there is an additional variable 'hasData', which is 1 if the image was presented to the observer in this condition and 0 otherwise. Since fixations can be outside the image and will therefore be excluded, there is also an additional variable fixationNumber to keep a correct count of the fixation number in the trial.</p> <p>boundingBoxesExperiment2.mat contains bounding box data for experiment 2 in image (and fixation) coordinates. Notation as for experiment 1, but coordinates refer to image and eyetracking coordinates used for experiment 2 and therefore can differ occasionally.</p> <p><br> figure3and4.m generates figures 3 and 4 of the article from these data files.</p> <p>dataForExperiment2.Rdata contains the data frame data, which contains for each fixation the values of the predictors used in the model of tables 2 amd 3. This is computed from the matlab data listed above in addition to the peak values of the AWS salience in the object. The fields imgMot and imgVis contain the motivational ground truth and the salience manipulation, respectively.</p> <p>table2.R uses the Rdata file to compute the models for table 2 of the article and print summary results</p> <p>table3.R uses the Rdata file to compute the models for table 3 of the article and print summary results. Note that the computation can take substantial time; results might deviate slightly depending on the exact version of R and its libraries used.</p> <p> </p>
Data supplementing article "Transport of riverine material from multiple rivers in the Chesapeake Bay: important control of estuarine circulation on the material distribution" under review at the Journal of Geophysical Research - Biogeoscience
<p>These data supplement the article: Du, J. and J. Shen, Transport of riverine material from multiple rivers in the Chesapeake Bay: important control of estuarine circulation on the material distribution, under review at the Journal Of Geophysical Research: Biogeoscience</p> <p>contact: Jiabi Du, jiabi@vims.edu</p> <p>Below are descriptions of the data files included here:</p> <p>1. Monthly mean tracer output [1985-2014]</p> <p>-netCDF format results for monthly mean tracer concentrations from different sources (Susquehanna, Potomac, Rappahannock, York, James Rivers, and Coastal Ocean)</p> <p>-grid information are also included</p> <p>2. Matlab Scripts For Plotting.zip:</p> <p>-Matlab scripts used to plot the horizontal map, the vertical profile for the along channel section, the vertical profile for cross-channel sections. The script enables users to define the period and section no to plot. </p> <p>3. tracer influx and outflux ratio at 9 cross-section.xls:</p> <p>-an excel file contains the bottom tracer influx ratio and surface tracer outflux ratio for different rivers at different sections. </p>
Roadmap for Developing a Dynamic and Reproducible Research Article with ARTE workflow
<p>The figures illustrates a roadmap for developing a dynamic and reproducible research article using <strong>ARTE (Article Reproducibility Template & Environment) </strong>workflow. The process is categorized into three levels of reproducibility: <strong>Minimal, Proper, and Full</strong>. Each level integrates specific tools and practices to enhance the reproducibility of the research.</p> <p>This proposal is published in the following <strong>OSF project</strong>: <a title="OSF" href="https://osf.io/njdq5/" target="_blank" rel="noopener">https://osf.io/njdq5/</a><br>Shared in the following <strong>GitHub repository</strong>: <a title="GitHub" href="https://github.com/phdpablo/article-template" target="_blank" rel="noopener">https://github.com/phdpablo/article-template</a><br>Exemplified in the following <strong>URL address</strong>: <a title="Article Example" href="https://phdpablo.github.io/article-template/" target="_blank" rel="noopener">https://phdpablo.github.io/article-template/</a></p> <h1>Minimal Reproducibility</h1> <p><strong>1. Use this template</strong>: Start by utilizing the provided template, which is pre-configured with the <strong>TIER Protocol 4.0</strong>. This protocol helps organize research projects in a systematic manner.</p> <p><strong>2. Edit READMEs</strong>: Customize the README files to reflect the details and conclusions of your research. These README files help document the project structure and contents.</p> <p><strong>3. Share on OSF</strong>: Share the project on the <strong>Open Science Framework (OSF)</strong> to ensure accessibility and transparency. This can be done at the beginning, during, or at the end of the research process.</p> <h1>Proper Reproducibility</h1> <p>In addition to the steps mentioned above, the following steps are added:</p> <p><strong>4. Quarto settings:</strong> Adjust the Quarto configuration to fit the needs of your project. This includes modifying the <em>_quarto.yml</em> file for different themes and output formats.</p> <p><strong>5. Develop your narrative</strong>: Write the research narrative using <em>Quarto’s .qmd files</em> within RStudio. This narrative forms the main body of your article and integrates text, code, and outputs seamlessly.</p> <p><strong>6. Environment control:</strong> Implement environment control using the <em>renv package</em>. This ensures that the R environment is consistent and reproducible. The <em>renv.lock</em> file captures the exact versions of R packages used in the project.</p> <p><strong>7. Share dynamic article:</strong> Render and share the dynamic document via GitHub Pages. The Quarto-generated HTML files (docs folders) are hosted on GitHub Pages, making the research accessible and interactive.</p> <h1>Full Reproducibility</h1> <p>Building on the proper reproducibility steps, full reproducibility adds:</p> <p><strong>8. Use Docker:</strong> Employ Docker for operating system-level environment control. A Docker container encapsulates the entire project environment, ensuring that the research can be replicated exactly, regardless of the local machine setup.</p> <h2>Tools Utilized</h2> <ul> <li><strong>TIER Protocol 4.0</strong>: Provides a framework for organizing and documenting research projects.</li> <li><strong>OSF:</strong> A platform for sharing research outputs and ensuring open science practices.</li> <li><strong>Quarto:</strong> A tool for creating dynamic documents that integrate text, code, and outputs.</li> <li><strong>RStudio:</strong> An integrated development environment (IDE) for R, facilitating data analysis and reproducible research.</li> <li><strong>Git/GitHub:</strong> Version control systems that track changes and manage project versions.</li> <li><strong>renv: </strong>An R package for managing and reproducing consistent R environments.</li> <li><strong>GitHub Pages:</strong> A service for hosting static websites directly from a GitHub repository.</li> <li><strong>Docker:</strong> A platform for containerizing applications to ensure consistent environments across different systems.</li> </ul> <h2>Summary</h2> <p>This template guides researchers through creating a reproducible and dynamic article using ARTE (Article Reproducibility Template & Environment) workflow. It starts with basic project setup and documentation, progresses through developing the research narrative with environment control, and culminates in full reproducibility with Docker. This structured approach ensures that research is well-documented, versioned, and easily shareable, promoting open science practices.</p>
Rare Diseases hand-annotated news articles and research articles
<p>This dataset was produced in 2023 from the data collected throughout 2022 from MEDLINE (scientific articles) and from Event Registry (news) for the development of the Rare Diseases Mining project (https://idefine-europe.org/medline)</p><p>The data is distributed across 16 diseases supporting the research paper "Automatic text classification and interactive data visualization of published scientific and news articles on Rare Diseases"</p><p>The available data comes in 2 kinds and file formats:<br>CSV - the hand annotation of the news articles in TXT with 5 to 10 MeSH headings<br>JSON - the input file for the evaluation of the classifier, including the title, news article body and MeSH heading IDs (available from https://www.ncbi.nlm.nih.gov/mesh/)</p><p>The CSV files with name starting in "f1_", "pr_", "re_" are the results of the F1/Precision/Recall evaluation for each of the cases.</p><p>This work was prepared by Joao Pita Costa (researcher) and curated by Tanja Zdolšek Draksler (domain expert) </p>
Research data for Taltal segment tomography article
<p><strong>Initial and final data for the local earthquake tomography experiment performed in the Taltal segment, northern Chile.</strong></p> <p>Article is submitted to G-cubed in August 2023.</p> <p>Content:</p> <p>- Initial earthquake catalog (*eqks)</p> <p>- Initial P- and S-wave arrival times (*data)</p> <p>- Initial 1D seismic velocity model (mod.1d)</p> <p>- Final earthquake catalog (*eqks)</p> <p>- Final P- and S-wave arrival times (*data)</p> <p>- Final seismic velocity models (Vp, Vs, Vp/Vs) in xyzv format</p> <p>- Station list</p> <p> - REST user guide</p> <p>- Tomography notes</p>
Dataset for "Exploring the Potential of Various Cyclodextrin-based Derivatives in Enzyme Supramolecular Engineering" research article
<p>The dataset for the paper titled "Exploring the Potential of Various Cyclodextrin-based Derivatives in Enzyme Supramolecular Engineering".<br>The dataset includes the following items:<br><br>1. "alpha-CD-TES_Characterization" xls file (1 file) including 5 datasheets;<br>These data sheets provide raw characterization data regarding the synthesis of the alpha-CD-TES molecule including 1H NMR, 13C NMR, FTIR, ESI-MS, and MALDI.</p> <p>2. "beta-CD-TES_Characterization" xls file (1 file) including 5 datasheets;<br>These data sheets provide raw characterization data regarding the synthesis of the beta-CD-TES molecule including 1H NMR, 13C NMR, FTIR, ESI-MS, and MALDI.</p> <p>3. "gamma-CD-TES_Characterization" xls file (1 file) including 5 datasheets;<br>These data sheets provide raw characterization data regarding the synthesis of the gamma-CD-TES molecule including 1H NMR, 13C NMR, FTIR, ESI-MS, and MALDI.<br><br>4. "Activities" xls file (1 file) including 6 datasheets;<br>These datasheets contain the raw data of the enzymatic activities measured for both LipMRD9 and A50 enzymes for each set of stability experiments reported in the manuscript or the supporting information documents.</p> <p>5. "Layer growth - A50" zip file including 5 files:<br>The unprocessed SEM micrographs of A50 enzyme shielding with alpha/beta/gamma-CD-TES building blocks (after 75 min reaction) and the corresponding size measurements in an xls file.</p> <p>6. "Layer growth - LipMRD9" zip file including 15 files:<br>The unprocessed SEM micrographs of the shielded LipMRD9 enzyme with α-, β-, and γ-CD-TES building blocks (after 30, 60, 90, and 120 min reaction) and the corresponding size measurements (using ImageJ software) saved in separate xls files.</p>
Dataset for ´´A New Detailed Global Map of Lunar Light Plains´´ research article
<p>The shapefiles (.shp) provided in this repository are the datasets for the paper ´A new detailed global map of lunar light plains´ published in PSJ journal Special Issue. </p> <p>These shapefiles can be directly imported in ArcMap/ArcPRO. The third dataset is a .tif or image of the global map for a fast and easy overview.</p> <p>Two geomorphologic maps of lunar light plains are provided as described in the article: one with an FeO wt% cut off of about 12 wt% (Area_lightplains), and the other around 8 wt% (Area_LPFeOLow). </p> <p> </p>
Data for the research article: "Simulations of Energetic Neutral Atom sputtering from Ganymede in preparation for the JUICE mission"
<p>Data for the research article: "Simulations of Energetic Neutral Atom sputtering from Ganymede in preparation for the JUICE mission"</p>
Data and codes related to the article: Renard et al. A Hidden Climate Indices Modeling Framework for Multi-Variable Space-Time Data. Water Resources Research.
<p>This package contains data and codes related to the article:</p> <p>B. Renard, M. Thyer, D. McInerney, D. Kavetski, M. Leonard and S. Westra. A Hidden Climate Indices Modeling Framework for Multi-Variable Space-Time Data. <em>Water Resources Research</em>.</p> <p><strong>R scripts</strong></p> <p>The main computations of the paper have been performed using a computing code named <a href="https://github.com/STooDs-tools">STooDs</a>, which is called using the bash script launchpad.sh.</p> <p>The R scripts in this package only perform pre-processing (create configuration files) and post-processing (analyze results) steps.</p> <ul> <li>Funk.R: a set of functions called by other scripts.</li> <li>1_defineModel.R: define the model to be inferred and create STooDs configuration files in <em>dataset_XXX/runs.</em></li> <li>2_analyzeResults.R: analyze the outputs of STooDs runs.</li> <li>3_crossValidation.R: analyze the outputs of cross-validation experiments in <em>dataset_XV</em> and <em>dataset_XV_1971-1990</em>.</li> </ul> <p><strong>Data</strong></p> <p>Data for the 3 cases (full dataset and 2 cross-validation experiments) are located in folders <em>dataset_XXX/data</em>.</p> <ul> <li>dat.txt: raw dataset in text format.</li> <li>dataset.RData: dataset in RData format.</li> <li>DMI.txt, NINO.txt, SAM.txt: 3 standard climate indices.</li> <li>spaceP.txt, spaceQ.txt, spaceT.txt: properties of Precipitation (P), Streamflow (Q) and Temperature (T) stations.</li> <li>[only for cross-validation experiments] validation.RData: left-out data used for validation.</li> </ul> <p> </p> <p> </p>
Data for research article "CCS investment – fiddling while the planet burns"
<p>This data set contains electricity systems and technology data for the UK, Poland, Texas, Wyoming, South Korea, and Indonesia. This data was used for modeling and analysis for the research article titled 'CCS investment – fiddling while the planet burns', authored by Yoga Wienda Pratama and Niall Mac Dowell from Imperial College London.</p> <p>In this work, we modeled and optimised the systems using Electricity Systems Optimisation framework (DOI: 10.5281/zenodo.1048943) that was developed General Algebraic Modeling System (GAMS). Data for this study is therefore provided in .gdx format that is suitable for GAMS.</p> <p>Procedure to reproduce this study is discussed in the article. Further questions can be addressed to Yoga Wienda Pratama (y.pratama18@imperial.ac.uk) or Niall Mac Dowell (niall@imperial.ac.uk).</p>
Data generated by the model presented in the research article entitled "Simulation of mass and heat transfer in an evaporatively cooled PEM fuel cell"
<p>This repository provides all the data and scripts necessary to reproduce the line plots shown in the manuscript entitled "Simulation of mass and heat transfer in an evaporatively cooled PEM fuel cell".</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.