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265 results for “ribosomal RNA”
Fig. 1 in Phylogenetic position of the freshwater fish trypanosome, Trypanosoma ophiocephali (Kinetoplastida) inferred from the complete small subunit ribosomal RNA gene sequence
Fig. 1 The neighbor-joining tree of aquatic trypanosomes constructed from complete small subunit ribosomal RNA (SSrRNA) sequences indicating the systematic position of T. ophiocephali and phylogenetic relationships among the aquatic trypanosomes whose sequences are available. T. lewisi, T. theileri, and T. avium are taken as the outgroup. Bootstrap values are shown for the maximum parsimony/neighborjoining/Bayes analyses
Figure 6 in Genetic divergences of South and Southeast Asian frogs: a case study of several taxa based on 16S ribosomal RNA gene data with notes on the generic name Fejervarya
Figure 6. Maximum likelihood (ML) tree of bufonid frogs based on nucleotide sequences of the mitochondrial 16S rRNA gene with Leptophryne borbonica as an outgroup. The bootstrap support (>50%) is indicated at nodes in the order of ML (500) replicates. Asterisks represent Bayesian posterior probability (BPP; * ≥95%). Specimens examined in this study are indicated by boldface type.
Figure 2 in Genetic divergences of South and Southeast Asian frogs: a case study of several taxa based on 16S ribosomal RNA gene data with notes on the generic name Fejervarya
Figure 2. Maximum likelihood (ML) tree based on nucleotide sequences of the mitochondrial 16S rRNA gene from 88 haplotypes of frogs (Table 1), with Xenopus laevis as an outgroup. Bootstrap support (>50%) is indicated at nodes in the order of ML (1000) replicates. Asterisks represent Bayesian posterior probability (BPP; * ≥95%).
Linked collectors and determiners for: Fungal 18S Ribosomal RNA (SSU) RefSeq Targeted Loci Project.
Natural history specimen data linked to collectors and determiners held within, "Fungal 18S Ribosomal RNA (SSU) RefSeq Targeted Loci Project". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad">https://bionomia.net/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad">https://gbif.org/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project.
Natural history specimen data linked to collectors and determiners held within, "Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/0b0dc293-3b26-49db-b9f1-817b31ebf603">https://bionomia.net/dataset/0b0dc293-3b26-49db-b9f1-817b31ebf603</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/0b0dc293-3b26-49db-b9f1-817b31ebf603">https://gbif.org/dataset/0b0dc293-3b26-49db-b9f1-817b31ebf603</a>. Formatted as a Frictionless Data package.
Fig. 2 in Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
Fig. 2. Phylogenetic tree of the centipedes based on the combined analysis of Edgecombe et al. (1999). The arrow indicates where the insertion of ca. 300 bp at region V7 occurred during the evolution of centipedes.
Fig. 5 in Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
Fig. 5. Phylogenetic analysis of the data from fig. 4 using the ''fixed character states'' method of Wheeler (1999) implemented in the computer program POY (Gladstein and Wheeler, 1997). Commands: poy fixedstates noleading norandomizeoutgroup gap 1 maxtrees 20 multibuild 10 seed‾1 slop 2 checkslop 5. The two circles illustrate the insertions of the Geophilomorpha (ca. 300 bp), and the Scolopendridae (ca. 25 bp).
Fig. 1 in Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
Fig. 1. Schematic representation of the 18S rRNA locus. The gray squares represent the variable regions V2, V4, V7, and V9 with insertions (V2: Onychophora, Geophilomorpha, Cephalopoda, Archaeogastropoda; V4: Hexapoda, Crustacea, Pauropoda, Holothuroidea, Chaetognatha, Platyhelminthes, Cephalopoda; V7: Onychophora, Hexapoda, Crustacea, Pauropoda, Chilopoda, Platyhelminthes, Hirudinea, Cephalopoda, Gastropoda; V9: Onychophora, Crustacea, Cephalopoda). The black arrowheads represent particular insertions (10: Pauropoda; 11: Onychophora; E23–7: Onychophora and Pauropoda; E23–8: Pauropoda; 29: Pauropoda; 46: Protura). The black bar represents the 500 bp deletion of the Symphyla.
Fig. 3 in Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
Fig. 3. Phylogenetic tree based on 18S rRNA sequence data indicating the position of two symphylans (box) with respect to other myriapods (underlined taxa) in a phylogenetic analysis of arthropods (from Giribet, 1997). The two symphylans appear related to other myriapods.
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene
<p>mTAGs is a tool for the taxonomic profiling of metagenomes. It detects sequencing reads belonging to the small subunit of the ribosomal RNA (SSU-rRNA) gene and annotates them through the alignment to full-length degenerate consensus SSU-rRNA reference sequences. The tool is capable of processing single-end and pair-end metagenomic reads, takes advantage of the information contained in any region of the SSU-rRNA gene and provides relative abundance profiles at multiple taxonomic ranks (Domain, Phylum, Class, Order, Family, Genus and OTUs defined at a 97% sequence identity cutoff).</p>
Fig. 4 in Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
Fig. 4. Variable region (V7) of the 18S rRNA locus of 17 species of centipedes.
A Pleistocene legacy of gene pools, ecodemes and admixtures of Stuckenia pectinata (L.) Börner as evidenced from microsatellites, complete chloroplast genomes and ribosomal RNA cistron (Europe, Africa)
Open the record for dataset details and reuse information.
Data for publication: Recognition of non-CpG repeats in Alu and ribosomal RNAs by the Z-RNA binding domain of ADAR1 induces A-Z junctions
Open the record for dataset details and reuse information.
Supplemental Data for "Shape changes and cooperativity in the folding of central domain of the 16S ribosomal RNA"
<p>This is data set associated with an article "Shape changes and cooperativity in the folding of central domain of the 16S ribosomal RNA" by Naoto Hori, Natalia A. Denesyuk, and D. Thirumalai. See README.txt file for the format of the data set.</p>
FIGURE 6. Fast distance based analysis tree for 16s ribosomal RNA gene. Note total genetic uniformity among 28 in Billions and billions sold: Pet-feeder crickets (Orthoptera: Gryllidae), commercial cricket farms, an epizootic densovirus, and government regulations make for a potential disaster
FIGURE 6. Fast distance based analysis tree for 16s ribosomal RNA gene. Note total genetic uniformity among 28 individuals of G. locorojo from eight "localities" on three continents. See Appendix A for specimen source data.
FIGURE 6 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 6. Phylogeny of the Chinese Prionini based on combined sequences of 12S rRNA and 16S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.0496, APSD = 3.764, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 4527.5195, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length = 792, CI = 0.7109, RI = 0.3639, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 4 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 4. Phylogeny of the Chinese Prionini based on partial sequences of 16S rRNA (excluding Priotyrannus closteroides)
FIGURE 3 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 3. Phylogeny of the Chinese Prionini based on partial sequences of 16S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.1041, APSD = 5.454, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 1754.1334, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length = 280, CI = 0.7429, RI = 0.4586, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 2 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 2. Phylogeny of the Chinese Prionini based on partial sequences of 12S rRNA (excluding Priotyrannus closteroides). A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values, Wtd. S.S. = 0.0266, APSD = 3.139, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values, -Ln likelihood = 2474.8359, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values, tree length =431, CI = 0.7425, RI = 0.4158, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities, the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 1 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 1. Phylogeny of the Chinese Prionini based on partial sequences of 12S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values, Wtd. S.S. = 0.0787, APSD = 4.741, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values, -Ln likelihood = 2748.8839, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values, tree length = 499, CI = 0.7054, RI = 0.3849, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities, the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.