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19 results for “saprobes”
FIGURE 4. Spegazzinia tessarthra recovered from the Ananas comosus. a-b in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
FIGURE 4. Spegazzinia tessarthra recovered from the Ananas comosus. a-b Hypomycetes stage on a dead leave c Conidiophores with α-β conidia. d Germinating conidia. e Conidiophore with β conidia. f Culture. Scale bars: c-h=10µm.
FIGURE 2 in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
FIGURE 2. Phylogram generated from maximum likelihood analysis based on combined ITS and LSU sequence data of Spegazzinia. Maximum likelihood bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.95 are shown in the nodes. The tree was rooted with Neomicrosphaeropsis alhagi-pseudalhagi (TASM 6134). The newly generated sequences of isolate Spegazzinia tessarthra 12 (herbarium number: MFLU23-0447) are indicated in bold.
FIGURE 3 in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
FIGURE 3. The morphological stage of Anthracocystis ananatum (MFLU23-0446). a Hyphomycetes. b Conidia. c-f Conidia with conidiophore. d Mycelium. e Conidia, conidiogenous cells and conidiophores. g Germinating conidia. h budding of conidia. f Light orange-colored colonies. Scale bar: b-h =10 μm.
FIGURE 1 in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
FIGURE 1. Phylogram generated from maximum likelihood analysis based on combined ITS and LSU sequence data of the Anthracocystis. Maximum likelihood bootstrap support values ≥ 70% and Bayesian posterior probabilities ≥ 0.95 are shown in the nodes. The tree was rooted with Triodiomyces triodiae (H.U.V. 17662). The newly generated sequences of isolate Anthracocystis anantum 6H (herbarium number: MFLU23-0446) are indicated in bold.
FIGURE 1 in Saprobic Dothideomycetes in Thailand: Neoaquastroma gen. nov. (Parabambusicolaceae) introduced based on morphological and molecular data
FIGURE 1. RAxML tree based on analysis of a combined dataset of LSU, SSU, TEF and ITS partial sequences. Bootstrap support values for maximum likelihood and maximum parsimony higher than 70 % and Bayesian posterior probabilities greater than 0.95 are defined above the internal branches respectively. The ex-type strains are in bold; the new isolates are in blue. The tree is rooted to Hysterobrevium mori and Hysterium pulicare in the Hysteriales.
FIGURE 2 in Saprobic Dothideomycetes in Thailand: Neoaquastroma gen. nov. (Parabambusicolaceae) introduced based on morphological and molecular data
FIGURE 2. Neoaquastroma guttulatum (holotype). a. Appearance of ascomata on host substrate. b. Section of ascoma. c. Peridium. d. Pseudoparaphyses. e-h. Asci. i-n. Ascospores (note the ascospore stained in Indian ink to show the mucilaginous sheath in n). o. Germinated spore. Scale bars: a = 200 μm, b = 100 μm, c, e–o = 20 μm, d = 10 μm.
FIGURE 3 in Saprobic Lophiostomataceae (Dothideomycetes): Pseudolophiostoma mangiferae sp. nov. and Neovaginatispora fuckelii, a new record from Mangifera indica
FIGURE 3. Neovaginatispora fuckelii (new record, MFLU 18-0069) a–b Appearance of ascomata on host. c Close-up of ascomata. d Section of ascoma. e Section through ostiole. f Section of peridium. g Pseudoparaphyses. h–j Asci. k–o Ascospores. p Germinated ascospore. q Colony from above. r Colony from below. Scale bars: d = 120 μm, e–j = 20 μm, k–p = 5 μm.
FIGURE 2 in Saprobic Lophiostomataceae (Dothideomycetes): Pseudolophiostoma mangiferae sp. nov. and Neovaginatispora fuckelii, a new record from Mangifera indica
FIGURE 2. Pseudolophiostoma mangiferae (holotype, MFLU 18-0068) a Appearance of ascomata on host. b Close-up of ascomata. c–d Vertical sections through ascomata. e Peridium. f Pseudoparaphyses. g–h Asci. i–k Ascospores. l Germinated ascospore. m Colony from above. n Colony from below. Scale bars: c–d = 100 μm, e = 20 μm, f = 30 μm, g–h = 20 μm, i–l = 10 μm.
FIGURE 1 in Saprobic Lophiostomataceae (Dothideomycetes): Pseudolophiostoma mangiferae sp. nov. and Neovaginatispora fuckelii, a new record from Mangifera indica
FIGURE 1. RAxML tree based on analysis of combined LSU, SSU, tef1-α and ITS dataset. Bootstrap support values for maximum likelihood (ML), maximum parsimony (MP) higher than 65 % and Bayesian posterior probabilities (BYPP) greater than 0.95 are given above each branch respectively. The new isolates are in red. Ex-type strains are in bold. The tree is rooted to Angustimassarina populi (Amorosiaceae).
FIGURE 2 in Bipolaris omanensis, a novel saprobic species of Bipolaris from Oman based on morphology and sequence data
FIGURE 2. Bipolaris omanensis (SQUCC 13828) a–e Conidiophores. f–i Conidia. j–l Conidiophore with conidia under scanning electron microscope. Scale bars a, b, d, f, j, i = 25 μm, Scale bar of b applies to b–c. Scale bar of d applies to d–e, Scale bar of f applies to f–i, Scale bar of j applies to j–k.
FIGURE 1 in Bipolaris omanensis, a novel saprobic species of Bipolaris from Oman based on morphology and sequence data
FIGURE 1. Phylogram generated from maximum likelihood analysis (ML) of combined ITS and GAPD sequence data of species of Bipolaris. ML bootstrap support values ≥50 % and ML bootstrap support values ≥50 % are given at the nodes (ML/MP). The new isolates are in red and the tree is rooted with Curvularia lunata (CBS 157.34) and Curvularia subpapendorfii (CBS 656.74). The scale bar represents the expected number of changes per site.
FIGURE 2 in Saprobic Dothideomycetes in Thailand: Phaeoseptum hydei sp. nov., a new terrestrial ascomycete in Phaeoseptaceae
FIGURE 2. Phaeoseptum hydei (MFLU 17-0660, holotype). a, b. Appearance of ascomata on host substrate. c. Section of ascoma. d. Peridium. e. Pseudoparaphyses. f–j. Asci. k–n. Ascospores. o. Colony on PDA. Scale bars: b = 500 µm, c = 100 µm, d, e, k–n = 10 µm, f–j = 20 µm.
FIGURE 1 in Saprobic Dothideomycetes in Thailand: Phaeoseptum hydei sp. nov., a new terrestrial ascomycete in Phaeoseptaceae
FIGURE 1. RAxML tree based on analysis of a combined dataset of LSU, SSU, ITS and TEF partial sequences. Bootstrap support values for ML and MP higher than 60 % and Bayesian posterior probabilities (BYPP) for BI greater than 0.95 are defined above the internal branches respectively. The ex-type strains are in bold; the new isolate is in blue. The tree is rooted to Hysterobrevium angustatum (MFLUCC 16-0623) and Gloniopsis praelonga (CBS 112415) in the Hysteriales.
TABLE 2 in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
<p><b>TABLE 2</b>. <i>Spegazzinia</i> GenBank accession numbers used in the phylogenetic analyses. The newly generated sequences are bold, and type strains are marked with T. “-” denotes unavailable.</p><table><tbody><tr><th><b>Species name</b></th><th><b>Culture Collection/Voucher number</b></th><th><b>GenBank accesion number ITS LSU</b></th></tr></tbody><tbody><tr><th><i>Spegazzinia radermacherae</i></th><td>KUMCC 21-0005</td><td>OP002065</td><td>OP002066</td></tr><tr><th><i>Spegazzinia tessarthra</i></th><td>MFLUCC 17-2249</td><td>MH071193</td><td>MH071197</td></tr><tr><th><i>Spegazzinia radermacherae</i></th><td>MFLU 20-0469T</td><td>MW084622</td><td>MW084354</td></tr><tr><th><i>Spegazzinia radermacherae</i></th><td>MFLUCC 17-2285T</td><td>NR_163331</td><td>NG_066308</td></tr><tr><th><i>Spegazzinia neosundara</i></th><td>MFLUCC 15-0456T</td><td>NR_171809</td><td>NG_068236</td></tr><tr><th><i>Spegazzinia lobulata</i></th><td>CBS 361.58T</td><td>MH857812</td><td>MH869344</td></tr><tr><th><i>Spegazzinia deightonii</i></th><td>MFLUCC 18-1625</td><td>ON117291</td><td>ON117309</td></tr><tr><th><i>Spegazzinia musae</i></th><td>MFLUCC 20-0001T</td><td>NR_171868</td><td>MN930514</td></tr><tr><th><i>Spegazzinia musae</i></th><td>MFLU 19-2823</td><td>MW063160</td><td>MW063221</td></tr><tr><th><i>Spegazzinia intermedia</i></th><td>CBS 249.89T</td><td>MH862171</td><td>MH873861</td></tr><tr><th><i>Spegazzinia camelliae</i></th><td>WNA03</td><td>MZ538526</td><td>MZ538560</td></tr><tr><th><i>Spegazzinia deightonii</i></th><td>MFLUCC 20-0002</td><td>MN956768</td><td>MN956772</td></tr><tr><th><i>Spegazzinia deightonii</i></th><td>E003</td><td>ON873998</td><td>ON873996</td></tr><tr><th><i>Spegazzinia camelliae</i></th><td>s5</td><td>OP714349</td><td>-</td></tr><tr><th><i>Spegazzinia camelliae</i></th><td>Z3</td><td>OP601351</td><td>-</td></tr><tr><th><i>Spegazzinia</i> sp. CGR-2022e</th><td>HKAS 122878</td><td>OP058974</td><td>-</td></tr><tr><th><i>Spegazzinia</i> sp. CGR-2022e</th><td>HKAS 122787</td><td>OP058973</td><td>-</td></tr><tr><th><i>Spegazzinia bromeliacearum</i></th><td>URM 8084T</td><td>MK804501</td><td>MK809513</td></tr><tr><th><i>Spegazzinia</i> sp.</th><td>MDCW-573</td><td>OR121523</td><td>-</td></tr><tr><th><i>Spegazzinia</i> sp.</th><td>ASV01831</td><td>ON866149</td><td>-</td></tr><tr><th><i>Spegazzinia neosundara</i></th><td>PEV18</td><td>ON495923</td><td>-</td></tr><tr><th><i>Spegazzinia</i> sp.</th><td>6-Nov</td><td>ON208531</td><td>-</td></tr><tr><th><i>Spegazzinia</i> sp.</th><td>MFLUCC 13-0211</td><td>MH040810</td><td>MH040812</td></tr><tr><th><i>Spegazzinia</i> sp.</th><td>CMU328</td><td>MH734522</td><td>MH734521</td></tr><tr><th><i>Spegazzinia tessarthra</i></th><td><b>MFLU23-0447</b></td><td>OR794324</td><td>OR807366</td></tr><tr><th><i>Neomicrosphaeropsis alhagi-pseudalhagi</i></th><td>TASM 6134T</td><td>MH069664</td><td>MH069670</td></tr></tbody></table>
TABLE 1 in One new species and a new record of saprobic fungi from Ananas comosus in northern Thailand
<p><b>TABLE 1.</b> <i>Anthracocystis</i> GenBank accession numbers used in the phylogenetic analyses. The newly generated seque bold, and type strains are marked with T. “-” denotes unavailable.</p><table><tbody><tr><th><b>Species name</b></th><th><b>Culture collection/Voucher no.</b></th><th><b>GenBank accesion numbers ITS</b></th><th><b>LSU</b></th></tr></tbody><tbody><tr><th><i>Anthracocystis grodzinskae</i></th><td>KRAM F-57394</td><td>NR_154694.1</td><td></td></tr><tr><th><i>Anthracocystis grodzinskae</i></th><td>KRAM:F-57394</td><td>KP297998.1</td><td></td></tr><tr><th><i>Anthracocystis grodzinskae</i></th><td>KRAM:F-57395</td><td>KP297999.1</td><td></td></tr><tr><th><i>Anthracocystis trispicatae</i></th><td>BRIP 47730</td><td>HQ013113.1</td><td></td></tr><tr><th><i>Anthracocystis hwangensis voucher</i></th><td>56607 (M)</td><td>AY740051.1</td><td>AY740104.1</td></tr><tr><th><i>Anthracocystis chrysopogonis</i></th><td>Ust.exs.407 (M</td><td>AY344973.1</td><td>AY740131.1</td></tr><tr><th><i>Anthracocystis heteropogonicola</i></th><td>BRIP 51822</td><td>HQ013101.1</td><td></td></tr><tr><th><i>Anthracocystis themedae-arguentis</i></th><td>voucher Ust.exs.855</td><td>AY344991.1</td><td>AY740140.1</td></tr><tr><th><i>Anthracocystis setariae</i></th><td>BRIP 49636</td><td>HQ013111.1</td><td></td></tr><tr><th><i>Anthracocystis whiteochloae</i></th><td>BRIP 51860</td><td>HQ013115.1</td><td></td></tr><tr><th><i>Anthracocystis xerofasciculata</i></th><td>BRIP 49682</td><td>HQ013117.1</td><td></td></tr><tr><th><i>Anthracocystis andrewmitchellii</i></th><td>BRIP 54879</td><td>NR_120127.1</td><td>JQ995370</td></tr><tr><th><i>Anthracocystis cenchri-elymoidis</i></th><td>BRIP 26491</td><td>HQ013094.1</td><td>HQ013122</td></tr><tr><th><i>Anthracocystis anthracoideispora</i></th><td>HUV18350</td><td>JN367290.1</td><td>JN367315</td></tr><tr><th><i>Sporisorium ovarium</i></th><td></td><td>AY740020.1</td><td>AJ236137</td></tr><tr><th><i>Sporisorium catharticum voucher</i></th><td>MP 2367</td><td>AY344971.1</td><td>AY740130</td></tr><tr><th><i>Anthracocystis destruens voucher</i></th><td>Ust.exs.472</td><td>AY344976.1</td><td>AY747077</td></tr><tr><th><i>Sporisorium destruens</i></th><td></td><td>AF045871.1</td><td></td></tr><tr><th><i>Anthracocystis formosana</i></th><td>Ust.exs.688 (H.U.P.)</td><td>AY344979.1</td><td>AY740134</td></tr><tr><th><i>Anthracocystis panici-leucophaei</i></th><td>58832a (DAR)</td><td>AY740035.1</td><td>AY740088</td></tr><tr><th><i>Anthracocystis panici-leucophaei</i></th><td>MP 2461</td><td>AY344986.1</td><td></td></tr><tr><th><i>Sporisorium panici-leucophaei</i></th><td></td><td>AY998102.1</td><td></td></tr><tr><th><i>Anthracocystis cenchri voucher</i></th><td>MP 1974</td><td>AY344972.1</td><td>AF453943</td></tr><tr><th><i>Sporisorium tumefaciens</i></th><td>BRIP 27689</td><td>AY333944.1</td><td></td></tr><tr><th><i>Sporisorium tumiforme</i></th><td>BRIP 26919</td><td>AY333945.1</td><td></td></tr><tr><th><i>Anthracocystis tumefaciens</i></th><td>Vanky, Ustilaginales Exsiccata 231 (M)</td><td>AY344969.1</td><td>AY740128.1</td></tr><tr><th><i>Sporisorium tumefaciens</i></th><td>BRIP 27688</td><td>AY333943.1</td><td></td></tr><tr><th><i>Anthracocystis fallax voucher</i></th><td>BRIP 27031</td><td>AY333942.1</td><td></td></tr><tr><th><i>Pseudozyma flocculosa isolate</i></th><td>AFTOL-ID 864</td><td>DQ411535.1</td><td>AY745712</td></tr><tr><th><i>Pseudozyma flocculosa</i></th><td>JCM10321</td><td>AB089364.1</td><td>AB089365</td></tr><tr><th><i>Anthracocystis themedae-arguentis</i></th><td>CBS:201.94</td><td>MH862459.1</td><td></td></tr><tr><th><i>Sporisorium mishrae</i></th><td>Ust. Exs. 967 (M)</td><td>AY344983.1</td><td>AY740136.1</td></tr><tr><th><i>Anthracocystis bothriochloae</i></th><td>BRIP 51819</td><td>HQ013092.1</td><td></td></tr><tr><th><i>Anthracocystis caledonica</i></th><td>BRIP 51854</td><td>HQ013093.1</td><td></td></tr><tr><th><i>Anthracocystis cymbopogonisbombycini</i></th><td>BRIP 52511</td><td>HQ013099.1</td><td></td></tr><tr><th><i>Anthracocystis abscondita</i></th><td>BRIP 49648</td><td>HQ013090.1</td><td></td></tr><tr><th><i>Anthracocystis anthracoideispora</i></th><td>HUV18350</td><td>JN367290.1</td><td></td></tr><tr><th><i>Anthracocystis apludae-aristatae</i></th><td>56590 (M)</td><td>AY740045.1</td><td>AY740098.1</td></tr><tr><th><i>Sporisorium elionuri</i></th><td></td><td>AY740157.1</td><td>AY740157.1</td></tr><tr><th><i>Sporisorium enteromorphum</i></th><td></td><td>AY740158.1</td><td>AY740158.1</td></tr><tr><th><i>Sporisorium everhartii</i></th><td></td><td>AY740159.1</td><td>AY740159.1</td></tr><tr><th><i>Anthracocystis fallax</i></th><td>BRIP 27687</td><td>AY333940.1</td><td></td></tr></tbody></table><p>......continued on the next page</p>
Figure 4 from: Ren G-C, Wanasinghe DN, Monkai J, Mortimer PE, Hyde KD, Xu J-C, Pang A, Gui H (2021) Novel saprobic Hermatomyces species (Hermatomycetaceae, Pleosporales) from China (Yunnan Province) and Thailand. MycoKeys 82: 57-79. https://doi.org/10.3897/mycokeys.82.67973
Figure 4 Hermatomyces sphaericus (HKAS 112725) a, b colonies on the natural substrate c mycelia d–g young conidia h–k mature conidia (h–j surface view k thickness view) l germinated conidium m, n culture characters on PDA. Scale bars: 1000 μm (a); 200 μm (b); 20 μm (c–i, l); 30 μm (j, k); 3 cm (m, n).
Figure 2 from: Ren G-C, Wanasinghe DN, Monkai J, Mortimer PE, Hyde KD, Xu J-C, Pang A, Gui H (2021) Novel saprobic Hermatomyces species (Hermatomycetaceae, Pleosporales) from China (Yunnan Province) and Thailand. MycoKeys 82: 57-79. https://doi.org/10.3897/mycokeys.82.67973
Figure 2 Hermatomyces turbinatus (HKAS 112724, holotype) a, b sporodochia on natural substrate c vertical section of sporodochium d conidiophores and conidiogenous cells e–h turbinate conidia i turbinate and mature lenticular conidia j–m mature lenticular conidia n germinated conidium o, p culture characters on PDA. Scale bars: 30 μm (c); 20 μm (d–n); 30 mm (o, p).
Figure 1 from: Ren G-C, Wanasinghe DN, Monkai J, Mortimer PE, Hyde KD, Xu J-C, Pang A, Gui H (2021) Novel saprobic Hermatomyces species (Hermatomycetaceae, Pleosporales) from China (Yunnan Province) and Thailand. MycoKeys 82: 57-79. https://doi.org/10.3897/mycokeys.82.67973
Figure 1 Phylogenetic RAxML tree based on analysis of a combined LSU, ITS, tub2, tef1-α and rpb2 and dataset. Bootstrap support values for ML and MP equal to or higher than 75% and Bayesian PP equal to or greater than 0.95 are shown at nodes. Hyphens (--) represent support values less than 75% / 0.95 BYPP. The ex-type strains are in bold and the new isolate in this study is in blue bold. The tree is rooted with Anteaglonium globosum (ANM 925.2) and A. parvulum (MFLUCC 14-0821). The scale bar represents the expected number of nucleotide substitutions per site.
Figure 3 from: Ren G-C, Wanasinghe DN, Monkai J, Mortimer PE, Hyde KD, Xu J-C, Pang A, Gui H (2021) Novel saprobic Hermatomyces species (Hermatomycetaceae, Pleosporales) from China (Yunnan Province) and Thailand. MycoKeys 82: 57-79. https://doi.org/10.3897/mycokeys.82.67973
Figure 3 Hermatomyces jinghaensis (HKAS 112167, holotype) a, b sporodochia on natural substrate c vertical section of sporodochium d conidiophores e, f conidiogenous cells g–l cylindrical conidia m–s mature lenticular conidia. Scale bars: 50 μm (c); 30 μm (d); 20 μm (e–r); 30 μm (s).
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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OpenNeuro
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