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342 results for “sorghum”
The first annotated genome assembly of Macrophomina tecta associated with charcoal rot of sorghum
<p>Raw reads of Macrophomina tecta were obtained from Nanopore, Illumina, and NextSeq (RNA). Files with information about the genome annotation, functional prediction, repeats, effectors and orthologous genes are included. </p>
Small-scale farming in drylands: New models for resilient practices of millet and sorghum cultivation - Dataset and code
<p>This repository contains the primary research data and R code used for data analysis for the article "<em>Small-scale farming in drylands: New models for resilient practices of millet and sorghum cultivation"</em> Published in the journal PLOS ONE (<a href="https://doi.org/10.1371/journal.pone.0268120">https://doi.org/10.1371/journal.pone.0268120</a>)</p> <p>N.B. To run the code unzip the folder 9-RData.zip and save it in the same working directory as the datasets</p> <p>V 2.0 changes:</p> <p>A. Datasets 1-2-3 - small formatting corrections</p> <p>B. Dataset 7 - fixing some errors in the calculations</p> <p>C. Code - minor fixes and seimplicifaction</p> <p> </p>
Proteomic analysis reveals different molecular mechanisms to face water deficit in mycorrhizal and nonmycorrhizal sorghum plants
<p>Differential accumulated proteins in response to water deficit in mycorrhizal and nonmycorrhizal sorghum plants were recovered from 2D gels and identified by HPLC-MSMS. MS analysis was performed by a Nano acquity nanoflow LC system (Waters, Milford, MA, USA) coupled to a linear ion trap (LTQ) velos mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) equipped with a nanoelectrospray ion source.</p>
Voxel Carving Based 3D Reconstruction of Sorghum
<p><strong>Dataset generated in the following paper:</strong></p> <p>Gaillard, M., Miao, C., Schnable, J. C., & Benes, B. (2020). Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency. Plant Direct, 4(10), e00255. https://doi.org/10.1002/pld3.255</p>
A survey of the sorghum transcriptome using single-molecule long reads
<p>Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in eukaryotes. Second-generation sequencing technologies have been extensively used to analyze transcriptomes. However, a major limitation of short-read data is that it is difficult to accurately predict full-length splice isoforms. Here we sequenced the sorghum transcriptome using Pacific Biosciences single molecule real time long-read isoform sequencing and developed a pipeline called TAPIS (Transcriptome Analysis Pipeline for Isoform Sequencing) to identify full-length splice isoforms and APA sites. Our analysis reveals transcriptome-wide full-length isoforms at an unprecedented scale with over 11,000 novel splice isoforms. Additionally, we uncover APA of ~11,000 expressed genes and more than 2,100 novel genes. These results greatly enhance sorghum gene annotations and aid in studying gene regulation in this important bioenergy crop. The TAPIS pipeline will serve as a useful tool to analyze Iso-Seq data from any organism.</p>
Integrating differential expression and weighted correlation network analysis for identifying genes controlling shoot development in Sorghum bicolor
<p>Supplementery materials of journal article "Integrating differential expression and weighted correlation network analysis for identifying genes controlling shoot development in <em>Sorghum bicolor</em>"</p>
Sorghum halepense (Poaceae) - stem - showing leaf bases
Image of Sorghum halepense (Poaceae) - stem - showing leaf bases
Sorghum halepense (Poaceae) - inflorescence - lateral view of flower
Image of Sorghum halepense (Poaceae) - inflorescence - lateral view of flower
Sorghum halepense (Poaceae) - inflorescence - whole - unspecified
Image of Sorghum halepense (Poaceae) - inflorescence - whole - unspecified
Sorghum halepense (Poaceae) - whole plant - in flower - general view
Image of Sorghum halepense (Poaceae) - whole plant - in flower - general view
Sorghum halepense (Poaceae) - leaf - basal or on lower stem
Image of Sorghum halepense (Poaceae) - leaf - basal or on lower stem
Figure 1 in Resistance of sorghum hybrids to sorghum aphid
Figure 1. Survival rate (lx) and mean number of nymphs/female (mx) of the Melanaphis sorghi on 15 hybrids of grain sorghum.
Fig. 1B. Fall armyworm weights for 7 in Use of benzimidazole agar plates to assess fall armyworm (Lepidoptera: Noctuidae) feeding on excised maize and sorghum leaves
Fig. 1B. Fall armyworm weights for 7 sorghum (off white) and maize (black) cultivars for Trial 2. Among the maize lines 'AB24E' was known to be susceptible and 'Mp708' and FAW1430' were known to be resistant to fall armyworm feeding. 'AN109', 'Collier', Entry 22, 'AN109', and 'Honey Drip' are sorghum lines. In Trial 2, fall armyworm neonate larvae were taken from the Mississippi State, Mississippi culture. Means with the same letter are not significantly different. Error bars represent one standard error of the mean.
Fig. 2A in Use of benzimidazole agar plates to assess fall armyworm (Lepidoptera: Noctuidae) feeding on excised maize and sorghum leaves
Fig. 2A. Seven day old fall armyworm larva (arrow) fed fall armyworm-resistant maize line 'Mp708' using the benzimidazole agar plate method.
Fig. 1A. Fall armyworm weights for 7 in Use of benzimidazole agar plates to assess fall armyworm (Lepidoptera: Noctuidae) feeding on excised maize and sorghum leaves
Fig. 1A. Fall armyworm weights for 7 sorghum (off white) and maize (black) cultivars for Trial 1. Among the maize lines 'AB24E' was known to be susceptible and 'Mp708' and FAW1430' were known to be resistant to fall armyworm feeding. 'AN109', 'Collier', Entry 22 and 'Honey Drip' are sorghum lines. In Trial 1, fall armyworm neonate larvae were taken from the Tifon, Georgia culture. Means with the same letter are not significantly different. Error bars represent one standard error of the mean.
Fig. 5 in The effects of light-emitting diode and conventional lighting on sorghum physiology and sugarcane aphid interaction
Fig. 5. Mean ± SE photosynthetic rates (μmol CO2 m−2 s−1) of resistant (TX-7000 and KS-585) and susceptible (TX-2783 and DKS-37-07) sorghum cultivars grown under either conventional or light-emitting diodes. All plants were measured at 15 d afer infestation with sugarcane aphids. Bars with different letters are significantly different (Kruskal-Wallis ANOVA, df = 3; H> 27.14; P <0.01).
Fig. 7 in The effects of light-emitting diode and conventional lighting on sorghum physiology and sugarcane aphid interaction
Fig. 7. Mean ± SE chlorophyll loss at 15 d afer infestation under lightemitting diode and conventional lights (control-infested)/control.Different letters represent significant differences (P <0.001) with a Kruskal-Wallis ANOVA followed by Dunn's multiple comparison test (H = 62.629; df = 7).
Fig. 3 in The effects of light-emitting diode and conventional lighting on sorghum physiology and sugarcane aphid interaction
Fig. 3. Susceptible sorghum variety KS-585 across 4 treatments: (A) control under light-emitting diodes; (B) infested under light-emitting diodes; (C) control under conventional lights; (D) infested under conventional lights. Plants were infested with sugarcane aphids and assessed 15 d post infestation.
Fig. 2 in The effects of light-emitting diode and conventional lighting on sorghum physiology and sugarcane aphid interaction
Fig. 2. Resistant sorghum variety TX-2783 across 4 treatments: (A) control under light-emitting diodes; (B) infested under light-emitting diodes; (C) control under conventional lights; (D) infested under conventional lights. Plants were infested with sugarcane aphids and assessed 15 d post infestation.
Fig. 1 in The effects of light-emitting diode and conventional lighting on sorghum physiology and sugarcane aphid interaction
Fig. 1. Light emission spectrum of the 9 band 60-watt light-emitting diode grow panels over the visible spectrum and into the near infrared.
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Allen Brain Atlas
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