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1,079 results for “source data”
Data for Table S10 of the article "Source-to-sink aeolian fluxes from arid landscape dynamics in the Lut Desert"
<p>Exhaustive list of the 227 individual denudation rates in arid areas compiled to estimate median denudation rate and sediment discharge for the internal river system of the Lut watershed.</p>
OpenFOAM cases of the paper "Development and validation of an open-source CFD model for the efficiency assessment of data centers"
<p>This dataset contains the<em> underling data</em> for the paper "Development and validation of an open-source CFD model for the efficiency assessment of data centers”, submitted for the consideration and open review in Open Research Europe (ORE).</p> <p><strong>Validation1.tar.xz:</strong> OpenFOAM files and scripts for the simulation of flow and thermal structures in an enclosed environment (Wang and Chen, 2009).</p> <p><em>Wang, Miao; Chen, Qingyan (2009). Assessment of Various Turbulence Models for Transitional Flows in an Enclosed Environment (RP-1271). HVAC&R Research, 15(6), 1099–1119. doi:10.1080/10789669.2009.10390881</em></p> <p><strong>Validation2-kOmegaSSTModel.tar.xz:</strong> OpenFOAM files and scripts for the simulation of forced convection in a room (Zhang et al. 2007) using k-omega SST turbulence model. </p> <p><em>Zhao Zhang, Wei Zhang, Zhiqiang John Zhai & Qingyan Yan Chen (2007) Evaluation of Various Turbulence Models in Predicting Airflow and Turbulence in Enclosed Environments by CFD: Part 2—Comparison with Experimental Data from Literature, HVAC&R Research, 13:6, 871-886, DOI: 10.1080/10789669.2007.10391460</em></p> <p><strong>Validation2-RNGkEpsilonModel.tar.xz:</strong> OpenFOAM files and scripts for the simulation of forced convection in a room (Zhang et al. 2007) using RNG k-epsilon turbulence model. </p> <p><em>Zhao Zhang, Wei Zhang, Zhiqiang John Zhai & Qingyan Yan Chen (2007) Evaluation of Various Turbulence Models in Predicting Airflow and Turbulence in Enclosed Environments by CFD: Part 2—Comparison with Experimental Data from Literature, HVAC&R Research, 13:6, 871-886, DOI: 10.1080/10789669.2007.10391460</em></p> <p><strong>Validation3.tar.xz:</strong> OpenFOAM files and scripts for the simulation of strong natural convection in a model fire room (Murakami et al. 1995).</p> <p><em>Murakami, S., S. Kato, and R. Yoshie. 1995. Measurement of turbulence statistics in a model fire room by LDV. ASHRAE Transactions 101(2):287–301.</em></p> <p><strong>Validation4.tar.xz:</strong> OpenFOAM files and scripts for the simulation of thermal distribution in an open-aisle data center (Abdelmaksoud et al. 2013).</p> <p><em>W.A. Abdelmaksoud, T.Q. Dang, H. Ezzat Khalifa, R.R. Schmidt Improved computational fluid dynamics model for open-aisle air-cooled data center simulations J. Electron. Packag., 135 (2013), pp. 030901-30913</em></p> <p><strong>Results_Validation1.tar.xz:</strong> Simulation results of the Validation case 1.</p> <p><strong>Results_Validation2.tar.xz:</strong> Simulation results of the Validation case 2.</p> <p><strong>Results_Validation3.tar.xz:</strong> Simulation results of the Validation case 3.</p> <p><strong>Results_Validation4.tar.xz:</strong> Simulation results of the Validation case 4.</p> <p><strong>layout.csv:</strong> Input file for the Validation case 4.</p>
DisVis-based filtering of contacts from co-evolution data (or other sources)
<p>Dataset described in the manuscript: <em>Improving the Quality of Co-evolution Intermolecular Contact Prediction with DisVis</em>Siri Camee van Keulen, Alexandre M.J.J. Bonvin</p> <p>Details about the data set can be found at: https://github.com/haddocking/contact-filtering</p> <p>This archive contains in addition all the models generated with HADDOCK.</p>
Plant community data at water sources, Mpala Research Centre, Kenya (2015-2017)
Data package contains four datasets of plant measurements taken at Mpala Research Centre, Laikipia County, Kenya from November 2015-September 2017. Additional code for data analysis is also provided as part of the publication `The effects of herbivore aggregations at water sources on savanna plants differ across soil and climate gradients`.
Genome-Wide DNA Methylation in Peripheral Blood and Long-Term Exposure to Source-Specific Transportation Noise and Air Pollution: The SAPALDIA Study (Supplementary Data)
<p>The zip file contains supplementary data for the publication - Genome-Wide DNA Methylation in Peripheral Blood and Long-Term Exposure to Source-Specific Transportation Noise and Air Pollution: The SAPALDIA Study, accepted for publication in Environmental Health Perspectives (DOI: 10.1289/EHP6174).</p> <p>The description of the files are noted below:</p> <p><strong>1. Readme File for SAPALDIA Noise and Air Pollution EWAS Single Exposure.zip </strong></p> <p>This zip file contains all the results of the association between source-specific transportation noise (aircraft, railway and road traffic), air pollution (NO<sub>2</sub> and PM<sub>2.5</sub>), and genome-wide DNA methylation, derived from multi-exposure models.</p> <p><strong>SAPALDIA_EWAS_SingleExposure_AircraftLden.txt</strong> contains the results for aircraft noise</p> <p><strong>SAPALDIA_EWAS_SingleExposure_RailwayLden.txt</strong> contains the results for railway noise</p> <p><strong>SAPALDIA_EWAS_SingleExposure_RoadtrafficLden.txt</strong> contains the results for road traffic noise</p> <p><strong>SAPALDIA_EWAS_SingleExposure_NO2.txt</strong> contains the results for nitrogen dioxide</p> <p><strong>SAPALDIA_EWAS_SingleExposure_PM25.txt</strong> contains the results for fine particulate matter</p> <p> </p> <p><strong>General footnote for all files:</strong>SAPALDIA: Swiss cohort study on air pollution and lung and heart diseases in adults. CpG: Cytosine-phosphate-Guanine. CHR: chromosome. SE: standard error. Lden: day-evening-night noise level. NO<sub>2</sub>: nitrogen dioxide. PM<sub>2.5</sub>: particulate matter with aerodynamic diameter <2.5 µm. Beta coefficients represent increase or decrease in DNA methylation per 10 dB increase in aircraft, railway or road traffic Lden or 10 µg/m<sup>3</sup> increase in NO<sub>2</sub> or PM<sub>2.5</sub>. All estimates were from single exposure epigenome-wide linear mixed models, with random intercept at the level of participant. Each model was adjusted for age, sex, educational level, area, and neighborhood socio-economic status, greenness index, smoking status and pack years, exposure to passive smoke, consumption of fruits, vegetables and alcohol, nested study, asthma status, survey, source-specific noise truncation indicator (for Lden models) and leukocyte composition. In a preliminary step, DNA methylation β-values were regressed on the Illumina control probe-derived first 30 principal components to correct for correlation structures and technical bias, and residuals of these regressions covering 430,477 CpGs were used as the technical bias-corrected methylation level at the CpG sites.</p> <p>Extreme values of the residuals (lying beyond three times the interquartile range below the first quartile and above the third quartile at each CpG site) were replaced with their corresponding detection threshold value (“modified winsorization”). The “winsorized” data were then used as the dependent variables in the epigenome-wide association study.</p> <p> </p> <p><strong>2. Readme File for SAPALDIA Noise and Air Pollution EWAS Multi Exposure.zip </strong></p> <p>This zip file contains all the results of the association between source-specific transportation noise (aircraft, railway and road traffic), air pollution (NO<sub>2</sub> and PM<sub>2.5</sub>), and genome-wide DNA methylation, derived from multi-exposure models.</p> <p><strong>SAPALDIA_EWAS_MultiExposure_AircraftLden.txt</strong> contains the results for aircraft noise</p> <p><strong>SAPALDIA_EWAS_MultiExposure_RailwayLden.txt</strong> contains the results for railway noise</p> <p><strong>SAPALDIA_EWAS_MultiExposure_RoadtrafficLden.txt</strong> contains the results for road traffic noise</p> <p><strong>SAPALDIA_EWAS_MultiExposure_NO2.txt</strong> contains the results for nitrogen dioxide</p> <p><strong>SAPALDIA_EWAS_MultiExposure_PM25.txt</strong> contains the results for fine particulate matter</p> <p><strong>General table footnotes: </strong>SAPALDIA: Swiss cohort study on air pollution and lung and heart diseases in adults. CpG: Cytosine-phosphate-Guanine. CHR: chromosome. SE: standard error. Lden: day-evening-night noise level. NO<sub>2</sub>: nitrogen dioxide. PM<sub>2.5</sub>: particulate matter with aerodynamic diameter <2.5 µm. Beta coefficients represent increase or decrease in DNA methylation per 10 dB increase in aircraft, railway or road traffic Lden or 10 µg/m<sup>3</sup> increase in NO<sub>2</sub> or PM<sub>2.5</sub>. All estimates were from multi-exposure epigenome-wide linear mixed models, with random intercept at the level of participant, and were adjusted for age, sex, educational level, area, and neighborhood socio-economic status, greenness index, smoking status and pack years, exposure to passive smoke, consumption of fruits, vegetables and alcohol, nested study, asthma status, survey, source-specific noise truncation indicator and leukocyte composition. Multi-exposure models included all five exposures (Aircraft, railway, road traffic Lden and respective truncation indicators, NO<sub>2</sub> and PM<sub>2.5</sub>) at the same time. In a preliminary step, DNA methylation β-values were regressed on the Illumina control probe-derived first 30 principal components to correct for correlation structures and technical bias, and residuals of these regressions covering 430,477 CpGs were used as the technical bias-corrected methylation level at the CpG sites. Extreme values of the residuals (lying beyond three times the interquartile range below the first quartile and above the third quartile at each CpG site) were replaced with their corresponding detection threshold value (“modified winsorization”). The “winsorized” data were then used as the dependent variables in the epigenome-wide association study.</p>
Variant, Metabolite and Source Data for: Population genomics uncover loci for trait improvement in the indigenous African cereal tef (Eragrostis tef)
<p>These files contain the variant and metabolome for a collection of 220 tef (<em>Eragrsotis tef)</em> accessions from an ethiopian diversity panel. The accessions were assembled and managed by the Ethiopian Institute of Agricultural Research (EIAR, Ethiopia). The variant data was produced at the John Innes Centre (UK). The metabolome data was produced at Aberystwyth University (UK). These dataset are described in Jones et al. (2024), <em>bioRxiv</em>, https://doi.org/10.1101/2024.09.30.615331. The source data for main figures in the publication are also included.</p> <p>The submission contains</p> <ol> <li>EIAR_filtered.vcf.gz: This is the variant data obtained from alignment of Illumina reads from all 220 teff accessions to the reference assembly of tef (Dabbi). Low quality variants were filtered out. This variant data was used for constructing the phylogenetic relationship between the accessions. The samples names corresponds to the DNA code in Supplementary Table S10 (Jones et al, 2024).</li> <li>pooled_EIAR_filtered.vcf.gz: After the phylogentic analysis described above, reads from accessions that were found to be genetically redundant were pooled before variant calling. This file was used for the SNP GWAS analysis. The samples names corresponds to the DNA code in Supplementary Table S10 (Jones et al, 2024).</li> <li> Metabolite_Profile.xlxs (source data for Figure 5): This file contains m/z feature intensities from untargeted metabolite fingerprinting using Flow Infusion Electrospray High-resolution Mass Spectrometry (FIE-HRMS). The sample names contains a combination of Location code and Plot number in Supplementary Table S10 e.g AT plot 1, CD plot 1, DZ plot 1, where AT, CD and DZ represent Alem Tena, Chefe Donsa and Debre Zeit, respectively. The data was used for the partial least squares discriminant analysis and differentially accumulated metabolites analysis presented in Figure 5.</li> <li>Source data: Numerical source data for graphs and charts in Figures 3 - 7.</li> <li>Tsedey TT2 Sequence from Improved Assembly: The 4A and 4B sequences around the TT2 orthologue in tef from the improved PacBio-based chromosome-scale assembly of tef. These sequences were used for plotting the LTR Copia alignments presented in Supplementary Figure 9. We thank Corteva for pre-publication access to this improved Tsedey genome assembly.</li> </ol>
Supplementary Material for "Using Unstructured Crowd-sourced Data to Evaluate Urban Tolerance of Terrestrial Native Animal Species within a California Mega-City"
<p>This data repository is for the publication "Using Unstructured Crowd-sourced Data to Evaluate Urban Tolerance of Terrestrial Native Animal Species within a California Mega-City" and contains all R scripts and data files to reproduce results as well as all supplementary tables and figures.</p>
Source data for "Cyclic jetting enables microbubble-mediated drug delivery"
<p>This repository provides the source data associated with the paper <em>"</em><strong>Cyclic jetting enables microbubble-mediated drug delivery</strong><em>"</em> by Marco Cattaneo <em>et al.</em>, published in <em>Nature Physics</em>.</p> <ul> <li>The "<strong>Cattaneo_Fig_X.xlsx</strong>" files contain the data necessary for reproducing Fig. X.</li> <li>The "<strong>Cattaneo_VideoSourceData.zip</strong>" file includes the video source data not included within the article used to generate Fig. 4a-c. For further details, please refer to the "Cattaneo_Fig_4.xlsx" file.</li> </ul>
Modified WRF/Chem source code, output data, and post-processing scripts for the GMD manuscript "Evaluation of WRF/Chem model (v3.9.1.1) real-time air quality forecasts over the Eastern Mediterranean"
<p>Here you will find the modified WRF/Chem code used in the simulations, the scripts used for post-processing and the model output data used in the manuscript. </p> <p>Two modifications have been made in module_aerosols_soa_vbs.F:</p> <ol> <li>ch_dust is set to1.0D-9*0.36</li> <li>The model is set not to initialize during restarts</li> </ol> <p>The model data directory includes:</p> <ol> <li>Two csv files (Winter and Summer) with the hourly concentrations of atmospheric pollutants at the locations of the ground stations. These data were used to produce Figures 4-8 in the manuscript as well as all the metrics.</li> <li>Two netcdf files (Winter and Summer) with the average ground concentrations of atmospheric pollutants over Cyprus. These data were use to produce Figure 3 in the manuscript. </li> </ol>
Data and Workflow to: Three-dimensional buoyant hydraulic fracture growth: constant release from a point source (Möri and Lecampion, (2022))
<p>This upload contains the relevant scripts, notebooks, and datasets to reproduce the numerically obtained results of the Journal article "Three-dimensional buoyant hydraulic fracture growth: constant release from a point source" by Möri and Lecampion, (2022).</p>
Data: DEAE-Dextran enhances the lentiviral transduction of primary human mesenchymal stromal cells from all major tissue sources without affecting their proliferation and phenotype
<p>This data set includes all the raw data collected for the following article: "DEAE-Dextran enhances the lentiviral transduction of primary human mesenchymal stromal cells from all major tissue sources without affecting their proliferation and phenotype"</p>
GRTSmh_base4frac: the raster data source GRTSmaster_habitats converted to base 4 fractions
<p>The data source file is a monolayered GeoTIFF in the <code>FLT8S</code> datatype. In <code>GRTSmh_base4frac</code>, the decimal (i.e. base 10) integer values from the raster data source <code>GRTSmaster_habitats</code> (<a href="https://doi.org/10.5281/zenodo.2682323">link</a>) have been converted into base 4 fractions, using a precision of 13 digits behind the decimal mark (as needed to cope with the range of values). For example, the integer <code>16</code> (<code>= 4^2</code>) has been converted into <code>0.0000000000100</code> and <code>4^12</code> has been converted into <code>0.1000000000000</code>.</p> <p>Long base 4 fractions seem to be handled and stored easier than long (base 4) integers. This approach follows the one of Stevens & Olsen (2004) to represent the reverse hierarchical order in a GRTS sample as base-4-fraction addresses.</p> <p>See R-code in the GitHub repository <a href="https://github.com/inbo/n2khab-preprocessing/tree/ecadaf54d4a5aa662d0d18fbfe59788732bb7182/src/generate_GRTS_10_GRTSmh_base4frac">'n2khab-preprocessing' at commit ecadaf5</a> for the creation from the <code>GRTSmaster_habitats</code> data source.</p> <p>A reading function to return the data source in a standardized way into the R environment is provided by the R-package <a href="https://inbo.github.io/n2khab/">n2khab</a>.</p> <p>Beware that not all GRTS ranking numbers are present in the data source, as the original GRTS raster has been clipped with the Flemish outer borders (i.e., not excluding the Brussels Capital Region).</p>
Modelling of ready biodegradability based on combined public and industrial data sources
<p>The European REACH (Registration, Evaluation, Authorization and restriction of Chemicals) Regulation, requires marketed chemicals to be evaluated for Ready Biodegradability (RB). In-silico prediction is a valid alternative to expensive and time-consuming experimental testing. However, currently available models may not be relevant to predict compounds of industrial interest, due to accuracy and applicability domain restriction issues.</p> <p>In this work we present a new and extended RB dataset (2830 compounds), issued by the merging of several public data sources. It was used to train classification models, which were externally validated and benchmarked against already-existing tools on a set of 316 compounds coming from the industrial context. New models showed good performances in terms of predictive power (BA = 0.74 – 0.79) and data coverage (83 – 91 %).</p> <p>The Generative Topographic Mapping approach was employed to compare the chemical space of the various data sources: several chemotypes and structural motifs unique to the industrial dataset were identified, highlighting for which chemical classes currently available models may have less reliable predictions.</p> <p>Finally, public and industrial data were merged into Global dataset containing 3146 compounds and including a significant subset of compounds coming from the industrial context. This is the biggest dataset reported in the literature so far which covers some chemotypes absent in the public data. Thus, predictive model developed on the Global dataset has much larger applicability domain than related models built on publicly available data. The developed model is available for the user on the Laboratory of Chemoinformatics website.</p> <p>This dataset is only the "All-Public" set, since the industrial compounds cannot be disclosed.</p> <p>This update contains additional entries from [J. Chem. Inf. Model. 52 (2012), pp. 655–669] and [J. Chem. Inf. Model. 53 (2013), pp. 867–878]</p>
Github commit data for the article "Beyond Zipf's law: Exploring the discrete generalized beta distribution in open-source repositories"
<p><span>This dataframe corresponds to the data used in the Nowak's et al. 2024 article "Beyond Zipf’s law: Exploring the discrete generalized beta distribution in open-source repositories" (see reference below).</span></p> <p><span>It consists of the distirbutions of number of commits per user across a number of GitHub repositories. <br><br>There are three columns:</span></p> <ul> <li><span>repository: the repository name</span></li> <li><span># of commits: the number of commits of a given individual</span></li> <li><span>rank: the user rank in the repository (by decreasing number of commits)<br><br></span></li> </ul> <p><strong><span>Reference:</span></strong></p> <p><span>Nowak, P., Santolini, M., Singh, C., Siudem, G., & Tupikina, L. (2024). Beyond Zipf’s law: Exploring the discrete generalized beta distribution in open-source repositories. <em>Physica A: Statistical Mechanics and Its Applications</em>, <em>649</em>, 129927. <a href="https://doi.org/10.1016/j.physa.2024.129927">https://doi.org/10.1016/j.physa.2024.129927</a></span></p>
Data sources for the groundwater depletion manuscript in Water Resources Research
<p>Here, you can access the source files for the figures (and tables) of the publication (see reference).</p> <p>Basically, you find the model output (WaterGAP 2.2a) for global scaled groundwater storage, total water storage, baseflow, groundwater recharge (diffuse and below surface water bodies) and a table where location of grid cell and belonging continental area (e.g. to convert values into km³) is given. In addition, an Excel-File for the diagram of HPA (Figure 2) is accessible.</p> <p>First part of the file name represents the model variant (IRR100, IRR100_S, IRR70_S, NOUSE_S, for details see the manuscript), then the variable name and unit is given (Total Water Storages [mm], groundwater storage [mm], Qb (baseflow) [mm], Rg (diffuse groundwater recharge) [mm], Rg_swb (groundwater recharge below surface water bodies) [mm]). File format is a zipped netCDF. The table "lat_lon_cont_area.txt" contains the ArcID (internal grid cell number), coordinates and the continental area which is used for WaterGAP calculations.</p> <p>Original data description: https://www.uni-frankfurt.de/49903932/6__GW_depletion</p>
Documentary sources of case studies on the issues a data protection officer faces on a daily basis
<p>The dataset contains the text of the documents that are sources of evidence used in [1] and [2] to distill our reference scenarios according to the methodology suggested by Yin in [3].</p> <p>The dataset is composed of 95 unique document texts spanning the period 2005-2022. This dataset makes available a corpus of documentary sources useful for outlining case studies related to scenarios in which the DPO finds himself operating in the performance of his daily activities.</p> <p>The language used in the corpus is mainly Italian, but some documents are in English and French. For the reader's benefit, we provide an English translation of the title of each document.</p> <p>The documentary sources are of many types (for example, court decisions, supervisory authorities' decisions, job advertisements, and newspaper articles), provided by different bodies (such as supervisor authorities, data controllers, European Union institutions, private companies, courts, public authorities, research organizations, newspapers, and public administrations), and redacted from distinct professional roles (for example, data protection officers, general managers, university rectors, collegiate bodies, judges, and journalists).</p> <p>The documentary sources were collected from 31 different bodies. Most of the documents in the corpus (a total of 83 documents) have been transformed into Rich Text Format (RTF), while the other documents (a total of 12) are in PDF format. All the documents have been manually read and verified.<br> The dataset is helpful as a starting point for a case studies analysis on the daily issues a data protection officer face. Details on the methodology can be found in the accompanying papers.</p> <p>The available files are as follows:</p> <ul> <li><strong>documents-texts.zip</strong> --> contain a directory of .rtf files (in some cases .pdf files) with the text of documents used as sources for the case studies. Each file has been renamed with its SHA1 hash so that it can be easily recognized.</li> <li><strong>documents-metadata.csv</strong> --> Contains a CSV file with the metadata for each document used as a source for the case studies.</li> </ul> <p>This dataset is the original one used in the publication [1] and the preprint containing the additional material [2].</p> <p>[1] F. Ciclosi and F. Massacci, "The Data Protection Officer: A Ubiquitous Role That No One Really Knows" in IEEE Security & Privacy, vol. 21, no. 01, pp. 66-77, 2023, doi: 10.1109/MSEC.2022.3222115, url: https://doi.ieeecomputersociety.org/10.1109/MSEC.2022.3222115.</p> <p>[2] F. Ciclosi and F. Massacci, "The Data Protection Officer, an ubiquitous role nobody really knows." arXiv preprint arXiv:2212.07712, 2022.</p> <p>[3] R. K. Yin, Case study research and applications. Sage, 2018.</p>
An annotated compilation of chronometric dates for the Middle-Upper Palaeolithic Transition (45-30 ka BP) in northern Iberia (Spain). Source Data.
<p>This repository contains the files of the chronometric dates framed between 45-30 ka BP in Northern Iberia.</p>
Source Data for "Transport properties and doping evolution of the Fermi surface in cuprates"
<p>Source data for the publication "Transport properties and doping evolution of the Fermi surface in cuprates", in Scientific Reports (https://doi.org/10.1038/s41598-023-39813-z) and on arxiv (https://doi.org/10.48550/arXiv.2303.05254).</p> <p>This dataset is organized in the following way:</p> <p>For every figure of the manuscript there is a separate folder, which includes the figure itself, as well as one or more additional folders for the individual panels. In those, there are one or more .csv files with the data. Some of the .csv files have two header lines, for example when the temperature and <span class="math-tex">\(n_{\mathrm{H}}\)</span> are recorded for multiple doping levels.</p> <p>Additional comments:</p> <ul> <li>Figure 1 <ul> <li>The generic phase boundaries are not included.</li> <li>The precision of values of <span class="math-tex">\(n_{\mathrm{loc}}\)</span>is increased for presentation purposes</li> </ul> </li> <li>experimental doping values are typically rounded to 2 decimal points, doping errors to 3 decimal points</li> <li>estimated <span class="math-tex">\(n_{\mathrm{eff}}\)</span> are rounded to 5 decimal points</li> <li>experimental <span class="math-tex">\(n_{\mathrm{H}}\)</span> from the literature are rounded to 3 decimal points</li> <li>otherwise, if it exists, experimental values are typically rounded to the error</li> <li>temperature is always given in Kelvin</li> <li><span class="math-tex">\(C_2\)</span>is given in <span class="math-tex">\([\mathrm{TK}^{-2}]\)</span> (i.e. Tesla Kelvin^-2)</li> <li>the unit for <span class="math-tex">\(n_{\mathrm{eff}}\)</span>, <span class="math-tex">\(n_{\mathrm{loc}}\)</span>, <span class="math-tex">\(n_{\mathrm{H}}\)</span> is [per CuO2 unit cell]</li> <li>the unit for the resistivity in figure 4 is described in the methods section of the article</li> </ul>
Data Source: Synergistic effects of precipitation and groundwater extraction on freshwater wetland inundation
Wetlands provide essential ecosystem services, including nutrient cycling, flood protection, and biodiversity support, that are sensitive to changes in wetland hydrology. Wetland hydrological inputs come from precipitation, groundwater discharge, and surface run-off. Changes to these inputs via climate variation, groundwater extraction, and land development may alter the timing and magnitude of wetland inundation. Data were compiled for 152 wetlands in west-central Florida over 14 years to investigate the response of wetland inundation to the interactive effects of precipitation, groundwater extraction, surrounding land development, basin geomorphology, and wetland vegetation class. Further methods are defined in the Methods section of the journal article associated with this dataset (Synergistic effects of precipitation and groundwater extraction on freshwater wetland inundation, published in the Journal of Environmental Management, 2023).
Models and source data for MuML dipole fitting
<p>Source data, models, and scripts necessary to reproduce the results of: "Predicting molecular dipole moments by combining atomic partial charges and atomic dipoles" (M. Veit, D. M. Wilkins, Y. Yang, R. A. DiStasio Jr., M. Ceriotti, arXiv: 2003.12437). The model is a combination of symmetry-adapted Gaussian process regression (SA-GPR) for atomic dipoles and scalar GPR for atomic partial charges, which are fit together to reproduce the molecule's total dipole moment. Source data, kernel matrices, weights, residuals, and scripts for fitting and plotting the results are included.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.