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5,864 results for “species diversity”
Long-term mid-marsh grasshopper abundance and species diversity at eight GCE-LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area during July or August from 2000 to 2023. Visual surveys were conducted along 8-10 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. These surveys were conducted as part of the GCE invertebrate monitoring program, and are performed annually to assess long-term changes in relative species abundances across the GCE study area.
Species diversity and plant dominance influence grassland stability in response to extreme climatic events and anthropogenic drivers across three LTER sites: Cedar Creek, Konza Prairie, and Kellogg Biological Station, 1982-2023.
The data in this package is associated with the analysis for a manuscript titled "Multiple community properties drive ecosystem resistance and resilience to extreme climate events across mesic grasslands". The files include compiled data on plant biomass production, species abundance, experimental treatments, extreme climate event values, and calculated diversity and stability measures from grassland plots in experiments at CDR, KBS, and KNZ LTER sites.
Fall 2022 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in July 2022. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2023 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2023. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2024 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2024. Visual surveys were conducted along eight 2m by 10m transects randomly located within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey is conducted annually to assess spatial patterns of grasshopper abundance and long-term changes in relative species abundances across the GCE study area. In 2024, only 3 sites were sampled due to time and weather constraints.
Fall 2020 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in July 2020. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2021 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2021. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
The effects of changing vegetative composition on the abundance, species diversity and activity of birds at the Jornada Basin LTER site, 1997
This data package contains bird abundance data collected in plots that have had various plant functional groups or species experimentally removed at the Jornada Basin LTER site in southern New Mexico, USA. This data was collected in an effort to distinguish the differential effects of plant community biomass, plant community functional groups, and biodiversity within functional groups on plant community function, including effects on animals. To make these distinctions, treatments were established by the selective removal of plant species or functional groups within experimental plots. There are eight treatments: control (C, no removals); four functional group removal treatments (PG, perennial grass removed; S, shrubs removed; SSh, subshrubs removed; Succ, succulents removed), and three species richness manipulation treatments. Richness manipulations included a simplified treatment (Simp), where only the single most abundant species of each growth form is preserved and all other species in the growth form are removed, a reduced‐Larrea treatment (rL), where the Larrea is assumed to be the dominant and is removed while minority components remain, and a reduced-Prosopsis treatment (rP), where Prosopis rather than Larrea is removed as the shrub dominant. Following treatments, bird abundance and habitat preference data was collected in 1997. This data set consists of plot number, treatment type, and time of bird presence by taxa and by habitat and behavior. This study is complete.
PRP02 Plant diversity, richness, and plant species cover in konza prairie restoration heterogeneity plots, since 1998
The experiment is a randomized complete block design with four whole plot hetereogeneity treatments replicated within each of four blocks (n=16 whole plots). The whole plot treatments were created using different combinations of soil depth and nutrient manipulations. The control plots contained no depth or nutrient manipulations. The maximum hetereogeneity plots contained three 2 m x 8 m vertical strips assigned to ambient, enriched and reduced N treatments and four 2 m x 6 m horizontal strips assigned to deep and shallow soil to result in six treatment combinations. The maximum heterogeneity plots are a split-block design. Every plot contained 12 subplots (2 m x 2 m) for sampling. Prior to sowing, all of the plots were excavatedto a depth of approximately 25 cm. Natural limestone slabs were laid in strips assigned to the shallow soil treatment. The soil from all plots was then replaced, leveled, and disked (2-3 cm deep). In February 1998, we incorporated sawdust (49% C; C:N ratio=122) into the strips assigned to the reduced-N treatment. The average C concentration and bulk density in the surface 15 cm following long-term cultivation was 1.5% and 1.2 g cm-3, respectively. Sawdust was tilled into the soil at a rate of 5.5 kg dry wt./m2 to achieve a C concentration representative of native prairie soil (approx. 3% C). Surface applications of granular sugar were initiated in 2004 at a rate of 200 g sucrose m-2 (84.22 g C/m2) 3-4 times each growing season. Strips assigned to the enriched-N treatment were fertilized with 5 g N m2/y (applied as ammonium-nitrate) in July of the first growing season and early June of each subsequent years.
Baltimore Ecosystem Study: Increased diversity of the regional species pool via seeding augments establishment of native species in experimental vacant lot restorations
The harsh geophysical template characterized by the urban environment combined with people’s choices has led ecologists to invoke environmental filtering as the main ecological phenomena explaining urban biodiversity patterns. Yet, dispersal is often overlooked as a driving factor, especially on expanding vacant land. Does overcoming dispersal limitation by seeding native species in urban environments and increasing the functional or phylogenetic diversity of the seeding pool increase native plant species diversity and abundance in urban vacant land? We took an experimental approach to learn how different dimensions of plant biodiversity within an augmented regional species pool, via seed additions, can explain variation in community structure over a 3-year period. Vacant lots were cleared and manipulated with seeding treatments of high or low phylogenetic and functional diversities from a pool of 28 native species. Establishment success, total native cover and native species richness were followed and compared to cleared, unseeded control lots as well as un-manipulated lots. Seeding increased native plant abundance and richness over uncleared plots, as well as cleared and unseeded control plots. Phylogenetically diverse seed mixtures had greater establishment success than mixtures composed of closely related species. Diversifying seed mixtures increased the likelihood of including species that are better able to establish on vacant land. However, there were no differences in varying levels of either functional or phylogenetic diversity. Augmenting the regional species pool via diverse seed mixtures can enhance native plant cover and richness under the harsh environmental conditions conferred by land abandonment.
Fall 2003 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2003. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2004 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2004. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2014 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2014. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2015 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in July 2015. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2016 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2016. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2017 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in July and August 2017. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2018 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in July 2018. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Fall 2019 grasshopper monitoring -- mid-marsh grasshopper abundance and species diversity at eight GCE LTER sampling sites
Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area in August 2019. Visual surveys were conducted along 8 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. This survey was conducted as part of the GCE invertebrate monitoring program, and will be performed annually to assess long-term changes in relative species abundances across the GCE study area.
Data and code from: Insect biomass decline scaled to species diversity: General patterns derived from a hoverfly community
<p>To study changes in flying insect communities, and hoverflies in particular, malaise trap samples from a German site were compared between two years (Hallmann et al. 2020). The data files deposited here contain data obtained from six malaise traps in the Wahnbachtal (North Rhine-Westphalia, Germany, 50.851944N, 7.320833E) that were deployed in 1989 and again in 2014, at the exact same locations. Traps were situated in wet meadows as well as tall perennial meadows, in close proximity to shrub corridors, to forest–grassland borders, and to the Wahnbach River and surrounded by agricultural land, essentially a rather heterogeneous habitat. The Wahnbach River and the greater part of the valley are protected for watershed purposes and are subject to nature conservation management by the Wahnbach Talperrenverband. Hence, several restrictions apply to safeguard against water contamination.</p> <p>Total insect biomass collected with these traps was already included in Hallmann et al. (2017), but here we focus on additional information: the abundance and richness of hoverflies (Syrphidae) in each of the collected samples (pots). Methodologies of collection are described in Sorg (1990), Schwan et al. (1993), Sorg et al. (2013), Hallmann et al. (2017), and Ssymank et al. (2018). In brief, malaise traps were deployed throughout the growing season and operated continuously (day and night). Malaise trap construction (e.g., size, material, colouring, and ground sealing) and placing (e.g., positioning, orientation, and slope of the locations) were standardised in all aspects. Insect samples were preserved in 80% ethanol solution. Catches of the six traps investigated in the present study were emptied regularly: On average exposure intervals were 7.0 d (SD = 0.5) in 1989 and 16.7 d (SD = 5.6) in 2014. Across the six traps in 2014 the total exposure time (in number of days) was 42% higher compared to 1989. All collected samples (n = 196) were used in the present analysis with in total 19,604 individual hoverflies counted, distributed over 162 species and 59 genera.</p> <p>To assess how environmental conditions have changed over the 25 year, several additional datasets were assembled. Climatic<br> data were obtained from 169 climatic stations and were used to interpolate daily weather variables to each trap location, using spatiotemporal kriging. These steps are described in detail in Hallmann et al. (2017).</p> <p>Our analysis (see R code) consists of three components. First, we considered total abundance, species richness, and species diversity, at two temporal scales: pooled per year, i.e., across the sampling season, and seasonally (i.e., per day), and we compared these metrics between 1989 and 2014. Second, we examined how total flying biomass (i.e., the weight of all trapped insects, of which hoverflies are only a small proportion) related to total abundance as well as species richness of hoverflies. Third, we derived persistence probabilities and population growth rate trends per species, to examine interspecific variation in these parameters.</p> <p>Descriptions of the deposited files:</p> <p><strong>Groups.csv</strong><br> MF_NR = identifier of each of the six malaise trap locations<br> yrf = year of sampling<br> pot = sample identifier<br> dt = number of sampling days<br> from.dnr = day-of-the-year on which a pot was attached to a malaise trap<br> to.dnr = day-of-the-year on which a pot was collected from a malaise trap<br> mean.daynr = mean day-of-the-year of the sampling period<br> Nspec = number of different hoverfly species found in a pot<br> Nind = number of hoverfly individuals found in a pot</p> <p><strong>Counts.csv</strong><br> A matrix of counts of individual hoverflies per pot per species. The 196 rows represent the pots in the same order as in the file 'Groups.csv'. The columns represent the 162 different hoverfly species found. The scientific species names are indicated in the column headers.</p> <p><strong>PairedData.csv</strong><br> pot = sample identifier<br> JAHR = year of sampling<br> MF_NR = identifier of each of the six malaise trap locations<br> dt = number of sampling days<br> from.dnr = day-of-the-year on which a pot was attached to a malaise trap<br> to.dnr = day-of-the-year on which a pot was collected from a malaise trap<br> NI = number of hoverfly individuals found in a potbiomass.daily<br> NSP = number of different hoverfly species found in a pot<br> biomass.daily = daily fresh weight [gram] of flying insects: total fresh weight in a pot divided by the number of sampling days.</p> <p><strong>ModelFrame.csv</strong><br> MF_NR = identifier of each of the six malaise trap locations<br> yrf = year of sampling<br> pot = sample identifier<br> dt = number of sampling days<br> from.dnr = day-of-the-year on which a pot was attached to a malaise trap<br> to.dnr = day-of-the-year on which a pot was collected from a malaise trap<br> mean.daynr = mean day-of-the-year of the sampling period<br> plot = identifier of each of the six malaise trap locations<br> date = date for which the weather variables are interpolated<br> daynr = day-of-the-year for which the weather variables are interpolated<br> altitude = altitude [m] of the malaise trap locations<br> year = year of sampling<br> temperature = interpolated temperature [degrees Celsius]<br> precipitation = interpolated precipitation [mm per day]<br> wind.speed = interpolated wind speed [m/s]</p> <p><strong>Data_Rcode.pdf</strong><br> This pdf provides the R-code behind the analysis of the Hoverfly data. Three datasets are provided along with this R-code document, namely "Counts.csv", "Groups.csv", "PairedData.csv" and "ModelFrame.csv". Additionally, the BUGS-code ""syrphidModel.jag" is required for running the daily-activity model in JAGS.</p> <p><strong>syrphidModel.jag</strong><br> This BUGS-code is required for running the daily-activity model in JAGS.</p>
Patterns and drivers of species diversity in the Indo-Pacific red seaweed Portieria: phylogenetic data
<p>Alignments, trees and Biogeobears analyses related to the study: Leliaert F, Payo DA, Gurgel CFD, Schils T, Draisma SGA, Saunders GW, Kamiya M, Sherwood AR, Lin S-M, Huisman John M, Le Gall L, Anderson RJ, Bolton John J, Mattio L, Zubia M, Spokes T, Vieira C, Payri CE, Coppejans E, D'hondt S, Verbruggen H, De Clerck O. Patterns and drivers of species diversity in the Indo-Pacific red seaweed Portieria. Journal of Biogeography. 2018;45(10):2299-313. doi:10.1111/jbi.13410</p> <p>Abstract: Biogeographical processes underlying Indo-Pacific biodiversity patterns have been relatively well studied in marine shallow water invertebrates and fishes, but have been explored much less extensively in seaweeds, despite these organisms often displaying markedly different patterns. Using the marine red alga Portieria as a model, we aim to gain understanding of the evolutionary processes generating seaweed biogeographical patterns. Our results will be evaluated and compared with known patterns and processes in animals. Species diversity estimates were inferred using DNA-based species delimitation methods. Historical biogeographical patterns were inferred based on a six-gene time-calibrated phylogeny, distribution data of 802 specimens, and probabilistic modelling of geographic range evolution. The importance of geographic isolation for speciation was further evaluated by population genetic analyses at the intraspecific level. We delimited 92 candidate species, most with restricted distributions, suggesting low dispersal capacity. Highest species diversity was found in the Indo-Malay Archipelago (IMA). Our phylogeny indicates that Portieria originated during the late Cretaceous in the area that is now the Central Indo-Pacific. The biogeographical history of Portieria includes repeated dispersal events to peripheral regions, followed by long-term persistence and diversification of lineages within those regions, and limited dispersal back to the IMA. Our results suggest that the long geological history of the IMA played an important role in shaping Portieria diversity. High species richness in the IMA resulted from a combination of speciation at small spatial scales, possibly as a result of increased regional habitat diversity from the Eocene onwards, and species accumulation via dispersal and/or island integration through tectonic movement. Our results are consistent with the biodiversity feedback model, in which biodiversity hotspots act as both ‘centres of origin’ and ‘centres of accumulation’, and corroborate previous findings for invertebrates and fish that there is no single unifying model explaining the biological diversity within the IMA.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.