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69 results for “species frequency”
CGP01 Gall-insect densities on selected plant species in watersheds with different fire frequencies
Long-term monitoring of gall-insect densities on Solidago canadensis, Vernonia baldwinii, and Ceanothus herbaceous. Gall abundances are censused in watersheds burned at one- to twenty- year intervals to asses the role of fire frequency and time since fire on gall-insect population dynamics. The data sets contain the following: Watershed fire frequency, number of growing seasons since last fire, plant species, number of galled stems, and number of censused stems. Censuses conducted for the 1989-1996 growing seasons except 1992 and 1994, next scheduled census is fall 1997.
Cover and frequency of biological soil crust community types, moss species, vascular plants, and abiotic land surface features, on gypsum & non-gypsum soils from the Chihuahuan and Mojave Deserts in 2023
This dataset contains raw and calculated percent cover and frequency data for biological soil crust (hereafter biocrust) functional groups, vascular plant functional groups, and abiotic land surface features on and off gypsum soils in the northern Chihuahuan and eastern Mojave Deserts. Abundance data were obtained from 20 study sites total, 10 located on soils derived from gypsum parent material and 10 located on soils derived from non-gypsum parent materials. Sites were grouped into 10 pairs, in which every gypsum site was partnered with a non-gypsum site located in the same region. Apart from soil type, partnered-site characteristics (topography, climate, elevation, slope, aspect, and presence of biocrusts) were held relatively constant. At each site, cover and frequency assessments were made using the line-point intercept method (LPI) and frequency quadrats (1.0 m^2), respectively. Biocrust functional groups included the following crusts: lichen, moss, incipient algal, light algal, dark algal, unknown photosynthetic crust, and vagrant cyanobacteria. Vascular plant categories included: perennial forbs, perennial graminoids, annual forbs, annual graminoids, subshrub, shrub, Yucca, and cacti. Abiotic land surface features included: woody litter, herbaceous litter, bare soil, rock, bedrock, and animal feces. Moss crusts identified within cover and frequency analyses were sampled, and classified to species level via microscopy. The resulting percent cover and frequency data was used to understand differences in biocrust and moss species abundance and diversity on and off gypsum soils; furthermore, how biocrust and moss species abundance was associated with the measured environmental variables. Soil physical and chemical data from this study can be accessed at knb-lter-jrn.210616002. This study and dataset are complete.
Marsh plant species frequency of occurrence along marsh transects for Rowley River tidal creeks associated with long term fertilization experiments, Rowley and Ipswich, MA.
Marsh plant species frequency of occurrence along marsh transects for Rowley River tidal creeks associated with long term fertilization experiments, Rowley and Ipswich, MA. The TIDE project aims to simulate eutrophication on a large scale by the addition of NO3- aiming to reach 70µM concentrations from May to September every year during the growing season. This fertilization of the marsh has been going on at Sweeney Creek since the 2004 growing season through 2011 and at Clubhead Creek in 2005 and from 2009 till 2011.
Figure 5 in Species Composition, Diversity and Length Frequency of By-Catch Sharks from the Syrian Coast
Figure 5. Geographic distribution of possible nursery areas for three species (H. griseus; +, C. plumbeus; ×, M. mustelus; *, black circles; main cities) in Syrian marine waters.
Figure1 in Species Composition, Diversity and Length Frequency of By-Catch Sharks from the Syrian Coast
Figure1. Changes of diversity indices seasonally for by-catch sharks: (a); diversity index H, (b); qualitative richness factor D, (c); evenness factor
Figure 3 in Species Composition, Diversity and Length Frequency of By-Catch Sharks from the Syrian Coast
Figure 3. Size (TL) variations of abundant and common of by-catch sharks per season off Syria coast. Males (gray), females (white): (a); H. griseus,(b); H. perlo, (c); C. plumbeus, (d); M. mustelus (e); G. melastomus, (f); S. blainvillei, (g); C. granulosus, (h); C. uyato
Figure 4 in Species Composition, Diversity and Length Frequency of By-Catch Sharks from the Syrian Coast
Figure 4. Total length (TL) frequency distributions (percent of species catch) of the abundant and common bycatch sharks off Syrian coast. Males (black), females (white). Vertical lines indicate maturity size of males (sporadic) and females (continuous) following literature: (a); H. griseus,(b); H. perlo, (c); C. plumbeus, (d); M. mustelus (e); G. melastomus, (f); S. blainvillei, (g); C. granulosus, (h); C. uyato
Figure 2 in Species Composition, Diversity and Length Frequency of By-Catch Sharks from the Syrian Coast
Figure 2. Changes of caught specimens number per season; (a) H. griseus,(b); H. perlo, (c); C. plumbeus, (d); M. mustelus (e); G. melastomus, (f); S. blainvillei, (g); C. moluccensis, (h); C. granulosus
Data from: eDNA metabarcoding of log hollow sediments and soils highlights the importance of substrate type, frequency of sampling and animal size, for vertebrate species detection
<p>Fauna monitoring often relies on visual monitoring techniques such as camera trappings, which have biases leading to underestimates of vertebrate species diversity. Environmental DNA (eDNA) has emerged as a new source of biodiversity data that may improve biomonitoring; however, eDNA based assessments of species richness remain relatively untested in terrestrial environments. We investigated the suitability of fallen log hollow sediment as a source of vertebrate eDNA, across two sites in south-western Australia - one with a Mediterranean climate and the other semi-arid. We compared two different approaches (camera trapping and eDNA metabarcoding) for monitoring of vertebrate species, and investigated the effect of other factors (frequency of species, timing of visits, frequency of sampling, body size) on vertebrate species detectability. Metabarcoding of hollow sediments resulted in the detection of higher species richness in comparison Hollow sediment detected higher species richness (29 taxa: six birds, three reptiles and 20 mammals) to metabarcoding of soil at the entrance of the hollow (13 taxa: three birds, two reptiles and eight mammals). We detected 31 taxa in total with eDNA metabarcoding and 47 with camera traps, with 14 taxa detected by both (12 mammals and two birds). By comparing camera trap data with eDNA read abundance, we were able to detect vertebrates through eDNA metabarcoding that had visited the area up to two months prior to sample collection. Larger animals were more likely to be detected, and so were vertebrates that were identified multiple times in the camera traps. These findings demonstrate the importance of substrate selection, frequency of sampling, and animal size, on eDNA based monitoring. Future eDNA experimental design should consider all these factors as they affect detection of target taxa. </p>
Data for: Assortative mating in an ecological context: Effects of mate choice errors and relative species abundance on the frequency and asymmetry of hybridization
<p><span>The frequency and asymmetry of mixed-species mating set the initial stage for the ecological and evolutionary implications of hybridization. How such patterns of mixed-species mating, in turn, are influenced by the combination of mate choice errors and relative species abundance remain largely unknown. We develop a mathematical model that generates predictions for how relative species abundances and mate choice errors affect hybridization patterns. When mate choice errors are small (<5%) the highest frequency of hybridization occurs when one of the hybridizing species is at low abundance, but when mate choice errors are high (>5%) the highest hybridization frequency occurs when species occur in equal proportions. Furthermore, females of the less abundant species are overrepresented in mixed-species matings. We compare our theoretical predictions with empirical data on naturally hybridizing Ficedula flycatchers and find that hybridization is highest when the two species occur in equal abundance, implying rather high mate choice errors. We discuss ecological and evolutionary implications of our findings and encourage future work on hybrid zone dynamics that take demographic aspects, such as relative species abundance, into account.</span></p>
Data for: Assortative mating in an ecological context: Effects of mate choice errors and relative species abundance on the frequency and asymmetry of hybridization
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Data from: eDNA metabarcoding of log hollow sediments and soils highlights the importance of substrate type, frequency of sampling and animal size, for vertebrate species detection
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Data from: Complexity of frequency receptive fields predicts tonotopic variability across species
<p><span>Primary cortical areas contain maps of sensory features, including sound frequency in primary auditory cortex (A1). Two-photon calcium imaging in mice has confirmed the presence of these global tonotopic maps, while uncovering an unexpected local variability in the stimulus preferences of individual neurons in A1 and other primary regions. Here we show that local heterogeneity of frequency preferences is not unique to rodents. Using two-photon calcium imaging in layers 2/3, we found that local variance in frequency preferences is equivalent in ferrets and mice. Neurons with multipeaked frequency tuning are less spatially organized than those tuned to a single frequency in both species. Furthermore, we show that microelectrode recordings may describe a smoother tonotopic arrangement due to a sampling bias towards neurons with simple frequency tuning. These results help explain previous inconsistencies in cortical topography across species and recording techniques. </span></p>
Data from: Sperm metabolic rate predicts female mating frequency across Drosophila species
<p>Female mating rates vary widely, even among closely related species, but the reasons for this variation are not fully understood. Across <i>Drosophila </i>species, female mating frequencies are positively associated with sperm length. This association may be due in part to sperm limitation, with longer-spermed species transferring fewer sperm, or to cryptic female choice. However, a previously overlooked factor is sperm metabolic rate, which may correlate with sperm length. If faster-metabolizing sperm accumulate age-related cellular damage more quickly, then females should remate sooner to obtain fresh sperm. Alternatively, frequent female mating may select for increased sperm competitiveness via increased metabolism. Here, we measure sperm metabolism across 13 <i>Drosophila </i>species and compare these measures to published data on female mating rate and on sperm length. Using fluorescent lifetime imaging microscopy, we quantify NAD(P)H metabolism ex vivo, in intact organs. Phylogenetically controlled regression reveals that sperm metabolic rate is positively associated with sperm length and with female mating frequency. Path analysis shows sperm length driving sperm metabolism and sperm metabolism either driving or being driven by female mating rate. While the causal directionality of these relationships remains to be fully resolved, and the effect of sperm metabolism on sperm aging and/or sperm competitiveness remains to be established, our results demonstrate the importance of sperm metabolism in sexual selection.</p>
Body and wing morphology, flight metabolic rates, and wingbeat frequencies for 13 stingless bee species
<p><span>Understanding the effect of body size on flight costs is critical for development of models of aerodynamics and animal energetics. Prior scaling studies that have shown that flight costs scale hypometrically have focused primarily on larger (> 100 mg) insects and birds, but most flying species are smaller. We studied the flight physiology of thirteen stingless bee species over a large range of body sizes (1-115 mg). Metabolic rate during hovering scaled hypermetrically (scaling slope = 2.11). Larger bees had warm thoraxes while small bees were nearly ecothermic; however, even controlling for body temperature variation, flight metabolic rate scaled hypermetrically across this clade. Despite having a lower mass-specific metabolic rate during flight, smaller bees could carry the same proportional load. Wingbeat frequency did not vary with body size, in contrast to most studies that find wingbeat frequency increases as body size decreases. Smaller stingless bees have greater relative wing surface area which may help them reduce the energy requirements needed to fly. Further, we hypothesize that the relatively larger heads of smaller species may change their body pitch in flight. Synthesizing across all flying insects, we demonstrate that the scaling of flight metabolic rate changes from hypermetric to hypometric at approximately 58 mg body mass with hypermetic scaling below (slope=1.2) and hypometric scaling (slope=0.67) above 58 mg in body mass. The reduced cost of flight likely provides selective advantages for the evolution of small body size in insects. The biphasic scaling of flight metabolic rates and wingbeat frequencies in insects supports the hypothesis that the scaling of metabolic rate is closely related to the power requirements of locomotion and cycle frequencies.</span></p>
The spatial extent and the dispersal strategy of species shape the occupancy frequency distribution of stream insect assemblages
<p>This is the datasets and R script for our manuscript titled "The spatial extent and the dispersal strategy of species shape the occupancy frequency distribution of stream insect assemblages."</p> <p><strong><em>Study area and sampling of Mecsek_species_Szivaketal.xlsx data</em></strong></p> <p>The study area is situated in the Mecsek Mountains in Hungary. Stream insects were collected using the kick and sweep sampling technique. A hand net with a frame width of 25 cm and a mesh size of 1000 µm was employed. The collection involved disturbing an area of 0.25 × 0.25 m. We employed a stratified random multihabitat sampling procedure. We collected 20 sample units from the major microhabitats in proportion to their occurrence within the reaches. Each sample unit was individually processed and sorted in the laboratory to ensure thorough and accurate analysis.</p> <p><strong>Disperse_trait_Szivaketal.xlsx </strong>data is based on DISPERSE database (Sarremejane et al., 2020)</p> <p>Methods for <strong>microhabitat_coverage_reach_transect.xlsx:</strong> Prior to sampling, we divided each 100 m long reach into 20 transects of comparable length and created microhabitat coverage maps. Using these maps, we assessed the proportionate coverage of different microhabitat types within each reach</p> <p>References:</p> <p>Sarremejane, R., Cid, N., Stubbington, R., Datry, T., Alp, M., Cañedo-Argüelles, M., Cordero-Rivera, A., Csabai, Z., Gutiérrez-Cánovas, C., Heino, J., Forcellini, M., Millán, A., Paillex, A., Pařil, P., Polášek, M., Tierno de Figueroa, J. M., Usseglio-Polatera, P., Zamora-Muñoz, C., & Bonada, N. (2020). DISPERSE, a trait database to assess the dispersal potential of European aquatic macroinvertebrates. <em>Scientific Data</em>,<em> 7(1), </em>386. https://doi.org/10.1038/s41597-020-00732-7</p>
Data from: Odonate species occupancy frequency distribution and abundance – occupancy relationship patterns in temporal and permanent water bodies in a subtropical area
<p>This paper investigates species richness and species occupancy frequency distributions (SOFD) as well as patterns of abundance-occupancy relationship (SAOR) in Odonata (dragonflies and damselflies) in a subtropical area. A total of 82 species and 1983 individuals were noted from 73 permanent and temporal water bodies (lakes and ponds) in the Pampa biome in southern Brazil. Odonate species occupancy ranged from 1 to 54. There were few widely distributed generalist species and several specialist species with a restricted distribution. About 70% of the species occurred in less than 10% of the water bodies, yielding a surprisingly high number of rare species, often making up the majority of the communities. No difference in species richness was found between temporal and permanent water bodies. Both temporal and permanent water bodies had odonate assemblages that fitted best with the unimodal satellite SOFD pattern. It seems that unimodal satellite SOFD pattern frequently occurred in the aquatic habitats. The SAOR pattern was positive and did not differ between permanent and temporal water bodies. Our results are consistent with a niche-based model rather than a metapopulation dynamics model.</p>
Text-fig. 10. Frequencies of anterior premolar patterns in mandibles (data after Tab. 4). in Anterior Premolar Variability In Pleistocene Cave And Brown Bears And Its Significance In Species Determination
Text-fig. 10. Frequencies of anterior premolar patterns in mandibles (data after Tab. 4).
Text-fig. 9. Frequencies of anterior premolar patterns in maxillae (data after Tab. 2). in Anterior Premolar Variability In Pleistocene Cave And Brown Bears And Its Significance In Species Determination
Text-fig. 9. Frequencies of anterior premolar patterns in maxillae (data after Tab. 2).
Data from: Complexity of frequency receptive fields predicts tonotopic variability across species
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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